HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 L 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 L 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 L 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 L 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 L 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 L 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 L 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 L 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 L 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 L 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 L 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 L 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 L 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 L 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 L 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 L 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 L 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 L 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU L 222 110.291 -12.050 289.390 1.00 84.74 ATOM 2 CA PRO L 223 107.690 -14.485 290.798 1.00 79.93 ATOM 3 CA HIS L 224 109.044 -17.192 293.115 1.00 72.71 ATOM 4 CA GLU L 225 107.969 -20.739 293.887 1.00 70.83 ATOM 5 CA TYR L 226 109.567 -22.564 296.792 1.00 62.14 ATOM 6 CA LEU L 227 109.042 -26.240 297.476 1.00 73.98 ATOM 7 CA ILE L 228 108.949 -26.276 301.277 1.00 88.25 ATOM 8 CA GLU L 229 108.109 -28.727 304.028 1.00 81.68 ATOM 9 CA GLN L 230 105.597 -28.598 306.844 1.00 55.87 ATOM 10 CA LEU L 231 104.848 -30.476 310.017 1.00 69.24 ATOM 11 CA GLN L 232 101.499 -32.095 310.842 1.00 64.75 ATOM 12 CA PHE L 233 100.376 -33.286 314.281 1.00 68.13 ATOM 13 CA THR L 234 97.496 -34.433 316.581 1.00 59.69 ATOM 14 CA GLY L 235 97.544 -35.822 320.174 1.00 51.80 ATOM 15 CA SER L 236 96.087 -39.338 320.763 1.00 51.31 ATOM 16 CA GLU L 237 95.591 -41.543 323.838 1.00 54.64 ATOM 17 CA THR L 238 97.416 -44.867 324.120 1.00 69.76 ATOM 18 CA ALA L 239 95.916 -47.849 325.924 1.00 63.97 ATOM 19 CA THR L 240 98.592 -50.412 326.830 1.00 65.99 ATOM 20 CA PRO L 241 97.478 -53.807 328.349 1.00 57.26 ATOM 21 CA SER L 242 98.324 -53.940 332.018 1.00 58.83 ATOM 22 CA ALA L 243 98.846 -57.695 331.667 1.00 72.37 ATOM 23 CA THR L 244 97.313 -61.023 330.640 1.00 82.39 ATOM 24 CA THR L 245 96.499 -59.181 327.407 1.00 69.72 ATOM 25 CA GLN L 246 98.057 -57.302 324.496 1.00 70.42 ATOM 26 CA ALA L 247 95.879 -54.277 323.752 1.00 48.87 ATOM 27 CA SER L 248 95.472 -52.881 320.241 1.00 53.55 ATOM 28 CA GLN L 249 94.168 -49.803 318.440 1.00 53.74 ATOM 29 CA ASN L 250 93.575 -48.216 315.056 1.00 58.17 ATOM 30 CA ILE L 251 94.411 -44.534 315.028 1.00 70.65 ATOM 31 CA ARG L 252 92.708 -42.988 312.012 1.00 68.04 ATOM 32 CA LEU L 253 95.384 -40.629 310.666 1.00 93.38 ATOM 33 CA ASN L 254 94.218 -37.228 309.409 1.00 85.68 ATOM 34 CA PHE L 255 97.050 -36.012 307.194 1.00 86.75 ATOM 35 CA ASN L 256 97.278 -34.421 303.746 1.00 69.78 ATOM 36 CA HIS L 257 99.628 -33.482 300.895 1.00 65.86 ATOM 37 CA PRO L 258 102.673 -35.429 299.596 1.00 79.14 ATOM 38 CA THR L 259 104.191 -36.888 302.791 1.00 66.22 ATOM 39 CA LYS L 260 107.876 -37.886 303.194 1.00 85.82 ATOM 40 CA TYR L 261 107.438 -39.867 306.373 1.00 71.60 ATOM 41 CA LEU L 262 105.559 -40.489 309.605 1.00 67.05 ATOM 42 CA ALA L 263 107.158 -40.276 313.050 1.00 68.14 ATOM 43 CA TRP L 264 105.482 -41.215 316.293 1.00 70.75 ATOM 44 CA ASN L 265 106.091 -41.871 319.982 1.00 72.33 ATOM 45 CA PHE L 266 104.183 -42.966 323.090 1.00 52.27 ATOM 46 CA ASN L 267 104.947 -40.552 325.911 1.00 57.32 ATOM 47 CA ASN L 268 104.175 -40.215 329.623 1.00 68.27 ATOM 48 CA PRO L 269 102.667 -36.692 329.815 1.00 86.02 ATOM 49 CA THR L 270 104.043 -36.254 333.348 1.00 87.59 ATOM 50 CA ASN L 271 107.651 -36.471 332.136 1.00 93.74 ATOM 51 CA TYR L 272 108.853 -34.439 329.147 1.00 87.38 ATOM 52 CA GLY L 273 110.745 -36.734 326.785 1.00 88.83 ATOM 53 CA GLN L 274 109.779 -39.990 328.491 1.00 89.99 ATOM 54 CA TYR L 275 109.024 -42.332 325.615 1.00 76.91 ATOM 55 CA THR L 276 110.053 -45.438 327.550 1.00 65.78 ATOM 56 CA ALA L 277 108.846 -47.275 330.692 1.00 69.38 ATOM 57 CA LEU L 278 110.618 -46.455 333.960 1.00 59.04 ATOM 58 CA ALA L 279 112.468 -49.393 335.491 1.00 55.21 ATOM 59 CA ASN L 280 114.806 -50.316 338.313 1.00 65.69 ATOM 60 CA ILE L 281 117.728 -50.346 335.895 1.00 73.31 ATOM 61 CA PRO L 282 120.684 -47.921 335.938 1.00 72.17 ATOM 62 CA GLY L 283 119.545 -44.779 334.149 1.00 54.75 ATOM 63 CA ALA L 284 115.969 -46.021 333.880 1.00 46.15 ATOM 64 CA CYS L 285 114.612 -44.404 337.073 1.00 43.55 ATOM 65 CA SER L 286 115.481 -42.142 339.989 1.00 48.05 ATOM 66 CA GLY L 287 117.954 -43.879 342.298 1.00 62.18 ATOM 67 CA ALA L 288 117.954 -46.947 340.050 1.00 64.53 ATOM 68 CA GLY L 289 120.235 -49.752 341.177 1.00 84.94 ATOM 69 CA THR L 290 120.101 -48.689 344.799 1.00 94.38 ATOM 70 CA ALA L 291 117.985 -48.653 347.969 1.00100.51 ATOM 71 CA ALA L 292 116.586 -45.264 346.950 1.00 75.86 ATOM 72 CA ALA L 293 115.350 -46.670 343.634 1.00 63.87 ATOM 73 CA THR L 294 111.886 -45.397 342.658 1.00 58.76 ATOM 74 CA VAL L 295 110.110 -46.555 339.493 1.00 64.97 ATOM 75 CA THR L 296 107.795 -43.580 340.050 1.00 83.09 ATOM 76 CA THR L 297 110.374 -40.976 339.022 1.00 59.21 ATOM 77 CA PRO L 298 112.654 -40.935 335.964 1.00 58.52 ATOM 78 CA ASP L 299 116.413 -40.325 336.054 1.00 60.11 ATOM 79 CA TYR L 300 115.782 -36.925 334.443 1.00 69.39 ATOM 80 CA GLY L 301 119.295 -36.461 333.129 1.00 58.24 ATOM 81 CA ASN L 302 118.978 -39.843 331.444 1.00 63.15 ATOM 82 CA THR L 303 115.324 -39.986 330.376 1.00 78.24 ATOM 83 CA GLY L 304 116.198 -41.677 327.085 1.00 82.11 ATOM 84 CA THR L 305 117.214 -45.307 326.419 1.00 84.13 ATOM 85 CA TYR L 306 118.222 -47.620 323.593 1.00 78.86 ATOM 86 CA ASN L 307 116.763 -50.618 325.422 1.00 59.77 ATOM 87 CA GLU L 308 113.795 -51.888 323.374 1.00 47.08 ATOM 88 CA GLN L 309 112.770 -53.986 326.384 1.00 67.15 ATOM 89 CA LEU L 310 111.375 -50.741 327.793 1.00 57.62 ATOM 90 CA ALA L 311 109.329 -49.647 324.737 1.00 58.96 ATOM 91 CA VAL L 312 105.603 -50.572 324.536 1.00 61.74 ATOM 92 CA LEU L 313 104.819 -51.011 320.858 1.00 68.34 ATOM 93 CA ASP L 314 104.879 -54.720 319.966 1.00 70.83 ATOM 94 CA SER L 315 103.908 -54.509 316.298 1.00 77.43 ATOM 95 CA ALA L 316 102.436 -52.032 313.841 1.00 83.13 ATOM 96 CA LYS L 317 101.245 -51.468 310.293 1.00 86.07 ATOM 97 CA ILE L 318 99.596 -48.734 308.258 1.00 92.75 ATOM 98 CA GLN L 319 96.486 -49.211 306.130 1.00 61.68 ATOM 99 CA LEU L 320 95.249 -47.328 303.076 1.00 53.03 ATOM 100 CA ASN L 321 91.516 -47.554 302.555 1.00 51.91 ATOM 101 CA GLY L 322 91.373 -50.749 304.618 1.00 58.79 ATOM 102 CA GLN L 323 94.180 -52.177 302.513 1.00 66.92 ATOM 103 CA ASP L 324 97.504 -53.038 304.172 1.00 77.26 ATOM 104 CA ARG L 325 100.243 -50.623 303.074 1.00 86.39 ATOM 105 CA PHE L 326 102.665 -53.250 304.313 1.00 83.97 ATOM 106 CA ALA L 327 102.787 -56.387 306.444 1.00 74.65 ATOM 107 CA THR L 328 103.032 -56.067 310.230 1.00 76.58 ATOM 108 CA ARG L 329 106.472 -55.490 311.702 1.00 73.13 ATOM 109 CA LYS L 330 107.588 -55.368 315.342 1.00 71.21 ATOM 110 CA GLY L 331 108.130 -52.026 317.042 1.00 68.69 ATOM 111 CA SER L 332 111.901 -52.568 316.922 1.00 47.01 ATOM 112 CA TYR L 333 111.729 -52.472 313.101 1.00 49.14 ATOM 113 CA PHE L 334 110.456 -48.887 312.969 1.00 61.30 ATOM 114 CA ASN L 335 112.961 -47.900 315.689 1.00 49.47 ATOM 115 CA LYS L 336 116.092 -49.628 314.370 1.00 45.38 ATOM 116 CA VAL L 337 115.633 -50.696 310.703 1.00 60.85 ATOM 117 CA GLN L 338 113.626 -47.853 309.142 1.00 47.69 ATOM 118 CA PRO L 339 116.169 -45.341 310.555 1.00 51.55 ATOM 119 CA TYR L 340 119.219 -47.478 309.679 1.00 67.87 ATOM 120 CA GLN L 341 117.977 -47.742 306.082 1.00 70.26 ATOM 121 CA SER L 342 117.042 -44.087 305.555 1.00 68.46 ATOM 122 CA ILE L 343 118.833 -42.001 308.195 1.00 78.28 ATOM 123 CA GLY L 344 122.013 -43.737 309.309 1.00 84.51 ATOM 124 CA GLY L 345 122.172 -42.654 312.934 1.00 75.15 ATOM 125 CA VAL L 346 120.729 -44.243 316.073 1.00 63.57 ATOM 126 CA THR L 347 117.295 -43.586 317.542 1.00 46.86 ATOM 127 CA PRO L 348 116.468 -44.195 321.222 1.00 67.87 ATOM 128 CA ALA L 349 113.784 -46.765 321.980 1.00 62.76 ATOM 129 CA GLY L 350 110.294 -45.266 321.962 1.00 80.34 ATOM 130 CA VAL L 351 110.651 -43.329 318.720 1.00 80.95 ATOM 131 CA TYR L 352 109.334 -44.848 315.501 1.00 81.05 ATOM 132 CA LEU L 353 109.672 -43.923 311.875 1.00 69.33 ATOM 133 CA TYR L 354 108.200 -45.093 308.610 1.00 80.85 ATOM 134 CA SER L 355 109.564 -43.374 305.547 1.00 80.14 ATOM 135 CA PHE L 356 107.921 -42.951 302.159 1.00 83.57 ATOM 136 CA ALA L 357 111.220 -41.462 300.955 1.00 96.69 ATOM 137 CA LEU L 358 114.664 -42.842 300.160 1.00 82.38 ATOM 138 CA LYS L 359 116.320 -40.000 302.111 1.00 81.98 ATOM 139 CA PRO L 360 113.847 -38.472 304.631 1.00 94.38 ATOM 140 CA ALA L 361 116.514 -36.205 306.079 1.00 69.62 ATOM 141 CA GLY L 362 117.230 -34.750 302.645 1.00 58.73 ATOM 142 CA ARG L 363 115.601 -31.533 301.440 1.00 63.74 ATOM 143 CA GLN L 364 115.334 -32.712 297.832 1.00 71.45 ATOM 144 CA PRO L 365 112.279 -34.999 297.348 1.00 93.15 ATOM 145 CA SER L 366 112.991 -38.717 297.006 1.00 81.97 ATOM 146 CA GLY L 367 109.796 -40.569 297.740 1.00 88.46 ATOM 147 CA THR L 368 106.411 -39.269 298.814 1.00 85.14 ATOM 148 CA CYS L 369 102.840 -40.350 299.544 1.00 76.28 ATOM 149 CA ASN L 370 99.853 -38.100 298.884 1.00 79.86 ATOM 150 CA PHE L 371 97.496 -38.158 301.864 1.00 74.35 ATOM 151 CA SER L 372 95.246 -35.648 300.119 1.00 64.70 ATOM 152 CA ARG L 373 94.219 -38.646 298.064 1.00 69.64 ATOM 153 CA ILE L 374 93.845 -41.325 300.740 1.00 55.34 ATOM 154 CA ASP L 375 90.287 -41.233 302.032 1.00 58.49 ATOM 155 CA ASN L 376 91.250 -43.466 304.936 1.00 41.04 ATOM 156 CA ALA L 377 94.694 -43.672 306.524 1.00 59.20 ATOM 157 CA THR L 378 94.962 -45.722 309.721 1.00 72.87 ATOM 158 CA LEU L 379 97.748 -46.831 312.053 1.00 93.00 ATOM 159 CA SER L 380 97.077 -50.282 313.502 1.00 58.51 ATOM 160 CA LEU L 381 98.878 -50.676 316.838 1.00 60.31 ATOM 161 CA THR L 382 99.324 -53.691 319.083 1.00 61.18 ATOM 162 CA TYR L 383 101.044 -53.234 322.417 1.00 61.97 ATOM 163 CA LYS L 384 103.183 -55.638 324.437 1.00 61.14 ATOM 164 CA THR L 385 101.779 -57.118 327.633 1.00 69.21 ATOM 165 CA CYS L 386 103.202 -54.958 330.414 1.00 45.16 ATOM 166 CA SER L 387 103.724 -57.793 332.885 1.00 58.82 ATOM 167 CA ILE L 388 107.386 -57.365 333.852 1.00 72.97 ATOM 168 CA ASP L 389 107.997 -56.193 337.411 1.00 63.25 ATOM 169 CA ALA L 390 109.586 -52.775 336.849 1.00 59.24 ATOM 170 CA THR L 391 111.342 -52.767 340.246 1.00 65.64 ATOM 171 CA SER L 392 113.250 -55.978 339.500 1.00 67.58 ATOM 172 CA PRO L 393 116.585 -55.765 337.582 1.00 57.23 ATOM 173 CA ALA L 394 116.698 -59.536 337.012 1.00 46.44 ATOM 174 CA ALA L 395 113.248 -59.483 335.419 1.00 74.19 ATOM 175 CA VAL L 396 113.761 -56.444 333.158 1.00 66.37 ATOM 176 CA LEU L 397 117.218 -57.548 331.936 1.00 48.49 ATOM 177 CA GLY L 398 116.238 -61.167 331.298 1.00 58.33 ATOM 178 CA ASN L 399 112.903 -61.163 329.484 1.00 97.34 ATOM 179 CA THR L 400 110.893 -61.913 326.328 1.00121.74 ATOM 180 CA GLU L 401 110.283 -59.805 323.194 1.00118.57 ATOM 181 CA THR L 402 106.534 -59.386 323.696 1.00105.48 ATOM 182 CA VAL L 403 106.464 -57.919 327.208 1.00 85.22 ATOM 183 CA THR L 404 107.553 -54.712 328.973 1.00 67.21 ATOM 184 CA ALA L 405 107.447 -53.421 332.541 1.00 62.80 ATOM 185 CA ASN L 406 104.021 -52.603 334.052 1.00 43.61 ATOM 186 CA THR L 407 105.354 -49.078 334.251 1.00 69.35 ATOM 187 CA ALA L 408 104.466 -48.942 330.536 1.00 81.20 ATOM 188 CA THR L 409 100.842 -48.104 331.411 1.00 75.40 ATOM 189 CA LEU L 410 101.776 -44.449 331.911 1.00 78.32 ATOM 190 CA LEU L 411 102.843 -44.012 328.278 1.00 62.39 ATOM 191 CA THR L 412 99.402 -42.832 327.130 1.00 53.49 ATOM 192 CA ALA L 413 100.169 -39.839 324.925 1.00 51.63 ATOM 193 CA LEU L 414 100.455 -41.048 321.318 1.00 51.27 ATOM 194 CA ASN L 415 102.111 -38.350 319.222 1.00 53.32 ATOM 195 CA ILE L 416 102.052 -38.912 315.473 1.00 55.85 ATOM 196 CA TYR L 417 103.905 -36.578 313.127 1.00 65.63 ATOM 197 CA ALA L 418 103.920 -36.282 309.351 1.00 52.44 ATOM 198 CA LYS L 419 106.318 -34.095 307.391 1.00 62.15 ATOM 199 CA ASN L 420 105.006 -32.967 304.038 1.00 56.64 ATOM 200 CA TYR L 421 105.882 -30.881 301.011 1.00 88.98 ATOM 201 CA ASN L 422 104.006 -27.806 299.821 1.00 78.69 ATOM 202 CA VAL L 423 104.673 -24.876 297.525 1.00 71.53 ATOM 203 CA LEU L 424 105.184 -21.283 298.639 1.00 47.25 ATOM 204 CA ARG L 425 104.577 -18.872 295.736 1.00 62.42 ATOM 205 CA ILE L 426 105.823 -15.295 296.108 1.00 53.28 ATOM 206 CA MET L 427 104.955 -12.451 293.770 1.00 71.00 ATOM 207 CA SER L 428 103.863 -8.821 293.692 1.00 91.33 ATOM 208 CA GLY L 429 105.033 -8.251 297.246 1.00 67.20 ATOM 209 CA MET L 430 103.222 -11.124 298.908 1.00 57.33 ATOM 210 CA GLY L 431 103.277 -14.887 299.358 1.00 48.74 ATOM 211 CA GLY L 432 100.976 -17.810 299.994 1.00 60.65 ATOM 212 CA LEU L 433 100.878 -21.580 300.075 1.00 60.50 ATOM 213 CA ALA L 434 99.796 -23.296 296.870 1.00 76.48 ATOM 214 CA TYR L 435 97.896 -25.999 298.742 1.00 82.24 ATOM 215 CA ALA L 436 95.691 -25.971 301.819 1.00 84.31 ATOM 216 CA ASN L 437 94.620 -28.856 304.090 1.00 94.36 TER