HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 M 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 M 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 M 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 M 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 M 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 M 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 M 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 M 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 M 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 M 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 M 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 M 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 M 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 M 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 M 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 M 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 M 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 M 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU M 222 115.517 -52.110 277.012 1.00 76.01 ATOM 2 CA PRO M 223 118.837 -53.884 277.717 1.00 64.32 ATOM 3 CA HIS M 224 120.511 -52.996 281.026 1.00 62.51 ATOM 4 CA GLU M 225 124.122 -52.847 282.162 1.00 76.06 ATOM 5 CA TYR M 226 124.882 -52.420 285.843 1.00 57.27 ATOM 6 CA LEU M 227 128.350 -51.755 287.182 1.00 61.40 ATOM 7 CA ILE M 228 128.297 -53.777 290.402 1.00 64.28 ATOM 8 CA GLU M 229 130.759 -54.889 293.042 1.00 71.33 ATOM 9 CA GLN M 230 131.729 -58.312 294.303 1.00 57.84 ATOM 10 CA LEU M 231 133.630 -59.800 297.195 1.00 78.07 ATOM 11 CA GLN M 232 136.602 -62.160 296.851 1.00 71.35 ATOM 12 CA PHE M 233 138.067 -64.334 299.617 1.00 72.55 ATOM 13 CA THR M 234 140.351 -67.278 300.614 1.00 62.25 ATOM 14 CA GLY M 235 141.432 -68.559 304.085 1.00 66.56 ATOM 15 CA SER M 236 145.198 -68.617 304.885 1.00 52.31 ATOM 16 CA GLU M 237 147.274 -69.734 307.889 1.00 46.84 ATOM 17 CA THR M 238 149.339 -67.199 309.830 1.00 48.55 ATOM 18 CA ALA M 239 152.614 -68.123 311.510 1.00 47.80 ATOM 19 CA THR M 240 153.589 -65.556 314.155 1.00 64.81 ATOM 20 CA PRO M 241 157.056 -65.880 315.873 1.00 53.84 ATOM 21 CA SER M 242 156.655 -67.078 319.421 1.00 51.60 ATOM 22 CA ALA M 243 159.737 -65.047 320.360 1.00 56.56 ATOM 23 CA THR M 244 163.425 -64.401 319.694 1.00 88.24 ATOM 24 CA THR M 245 162.289 -64.065 316.077 1.00 80.49 ATOM 25 CA GLN M 246 160.000 -62.095 313.770 1.00 61.33 ATOM 26 CA ALA M 247 158.379 -64.547 311.357 1.00 44.87 ATOM 27 CA SER M 248 157.456 -63.584 307.799 1.00 41.19 ATOM 28 CA GLN M 249 155.411 -64.842 304.855 1.00 48.58 ATOM 29 CA ASN M 250 154.404 -64.158 301.271 1.00 62.08 ATOM 30 CA ILE M 251 150.764 -64.928 300.630 1.00 68.53 ATOM 31 CA ARG M 252 150.302 -65.269 296.881 1.00 70.48 ATOM 32 CA LEU M 253 147.009 -63.440 296.282 1.00 89.54 ATOM 33 CA ASN M 254 144.596 -64.997 293.778 1.00 89.20 ATOM 34 CA PHE M 255 142.269 -62.162 292.810 1.00 85.09 ATOM 35 CA ASN M 256 140.877 -60.819 289.532 1.00 72.87 ATOM 36 CA HIS M 257 139.041 -57.916 287.882 1.00 61.04 ATOM 37 CA PRO M 258 139.374 -54.164 288.639 1.00 68.09 ATOM 38 CA THR M 259 139.842 -54.091 292.439 1.00 47.78 ATOM 39 CA LYS M 260 138.982 -51.097 294.682 1.00 57.98 ATOM 40 CA TYR M 261 140.825 -52.310 297.739 1.00 48.03 ATOM 41 CA LEU M 262 142.148 -55.175 299.842 1.00 50.67 ATOM 42 CA ALA M 263 141.093 -55.811 303.436 1.00 61.56 ATOM 43 CA TRP M 264 142.597 -58.406 305.724 1.00 61.96 ATOM 44 CA ASN M 265 142.768 -59.592 309.325 1.00 63.01 ATOM 45 CA PHE M 266 144.523 -62.230 311.433 1.00 54.34 ATOM 46 CA ASN M 267 141.939 -64.037 313.538 1.00 65.29 ATOM 47 CA ASN M 268 141.879 -66.673 316.284 1.00 71.45 ATOM 48 CA PRO M 269 139.474 -69.287 314.836 1.00 80.68 ATOM 49 CA THR M 270 138.319 -70.228 318.348 1.00 58.35 ATOM 50 CA ASN M 271 136.859 -66.763 318.968 1.00 76.79 ATOM 51 CA TYR M 272 134.604 -65.085 316.399 1.00 88.12 ATOM 52 CA GLY M 273 135.818 -61.531 315.827 1.00 85.11 ATOM 53 CA GLN M 274 139.089 -61.891 317.736 1.00 89.11 ATOM 54 CA TYR M 275 141.606 -60.081 315.566 1.00 75.00 ATOM 55 CA THR M 276 143.799 -59.093 318.510 1.00 66.39 ATOM 56 CA ALA M 277 145.879 -60.927 321.156 1.00 71.48 ATOM 57 CA LEU M 278 144.213 -61.577 324.516 1.00 60.29 ATOM 58 CA ALA M 279 145.886 -59.817 327.435 1.00 55.22 ATOM 59 CA ASN M 280 145.511 -59.131 331.133 1.00 68.26 ATOM 60 CA ILE M 281 144.248 -55.640 330.362 1.00 72.49 ATOM 61 CA PRO M 282 140.718 -54.341 331.061 1.00 63.07 ATOM 62 CA GLY M 283 138.541 -55.502 328.183 1.00 51.57 ATOM 63 CA ALA M 284 141.326 -57.617 326.703 1.00 46.93 ATOM 64 CA CYS M 285 140.425 -60.926 328.399 1.00 42.95 ATOM 65 CA SER M 286 137.925 -62.643 330.676 1.00 43.32 ATOM 66 CA GLY M 287 138.218 -61.274 334.209 1.00 55.38 ATOM 67 CA ALA M 288 141.000 -58.927 333.109 1.00 60.73 ATOM 68 CA GLY M 289 142.368 -56.680 335.834 1.00 87.55 ATOM 69 CA THR M 290 141.369 -59.064 338.588 1.00 90.61 ATOM 70 CA ALA M 291 142.224 -62.334 340.356 1.00 96.04 ATOM 71 CA ALA M 292 139.924 -64.189 337.958 1.00 70.31 ATOM 72 CA ALA M 293 141.857 -62.876 334.947 1.00 63.31 ATOM 73 CA THR M 294 142.392 -65.510 332.240 1.00 60.81 ATOM 74 CA VAL M 295 144.354 -64.786 329.056 1.00 66.27 ATOM 75 CA THR M 296 142.797 -67.992 327.710 1.00 77.88 ATOM 76 CA THR M 297 139.325 -66.495 327.273 1.00 46.83 ATOM 77 CA PRO M 298 138.318 -63.192 325.654 1.00 52.43 ATOM 78 CA ASP M 299 136.015 -60.600 327.230 1.00 55.88 ATOM 79 CA TYR M 300 133.364 -61.565 324.663 1.00 65.66 ATOM 80 CA GLY M 301 131.354 -58.379 324.968 1.00 63.55 ATOM 81 CA ASN M 302 134.544 -56.445 324.295 1.00 67.25 ATOM 82 CA THR M 303 136.419 -58.631 321.802 1.00 81.41 ATOM 83 CA GLY M 304 137.614 -55.612 319.824 1.00 87.58 ATOM 84 CA THR M 305 140.363 -53.089 320.677 1.00 84.10 ATOM 85 CA TYR M 306 142.027 -49.966 319.326 1.00 82.77 ATOM 86 CA ASN M 307 145.292 -50.864 321.049 1.00 59.65 ATOM 87 CA GLU M 308 147.874 -51.584 318.324 1.00 38.26 ATOM 88 CA GLN M 309 150.107 -53.110 321.009 1.00 61.29 ATOM 89 CA LEU M 310 147.851 -56.159 320.724 1.00 53.52 ATOM 90 CA ALA M 311 147.946 -56.564 316.912 1.00 54.18 ATOM 91 CA VAL M 312 150.520 -58.952 315.338 1.00 70.77 ATOM 92 CA LEU M 313 151.396 -57.484 311.961 1.00 77.11 ATOM 93 CA ASP M 314 154.673 -55.543 312.221 1.00 66.68 ATOM 94 CA SER M 315 155.066 -54.471 308.595 1.00 67.68 ATOM 95 CA ALA M 316 153.656 -55.288 305.178 1.00 87.79 ATOM 96 CA LYS M 317 153.838 -54.580 301.461 1.00 90.97 ATOM 97 CA ILE M 318 152.268 -55.846 298.255 1.00 96.62 ATOM 98 CA GLN M 319 154.218 -56.940 295.189 1.00 52.10 ATOM 99 CA LEU M 320 153.241 -57.038 291.528 1.00 39.94 ATOM 100 CA ASN M 321 155.212 -59.533 289.487 1.00 48.91 ATOM 101 CA GLY M 322 158.026 -59.470 292.043 1.00 52.42 ATOM 102 CA GLN M 323 158.042 -55.687 291.868 1.00 53.90 ATOM 103 CA ASP M 324 157.183 -53.670 294.990 1.00 64.78 ATOM 104 CA ARG M 325 153.805 -51.944 294.616 1.00 76.94 ATOM 105 CA PHE M 326 154.947 -49.720 297.452 1.00 89.83 ATOM 106 CA ALA M 327 157.582 -49.513 300.171 1.00 79.90 ATOM 107 CA THR M 328 157.061 -51.406 303.434 1.00 69.51 ATOM 108 CA ARG M 329 154.884 -49.757 306.062 1.00 63.64 ATOM 109 CA LYS M 330 154.131 -50.835 309.637 1.00 68.82 ATOM 110 CA GLY M 331 150.870 -52.590 310.433 1.00 75.98 ATOM 111 CA SER M 332 149.586 -49.438 312.145 1.00 43.87 ATOM 112 CA TYR M 333 149.709 -47.632 308.775 1.00 45.25 ATOM 113 CA PHE M 334 147.143 -49.922 307.136 1.00 67.10 ATOM 114 CA ASN M 335 145.011 -49.794 310.306 1.00 58.86 ATOM 115 CA LYS M 336 145.109 -46.053 311.027 1.00 46.20 ATOM 116 CA VAL M 337 146.392 -44.098 307.974 1.00 47.19 ATOM 117 CA GLN M 338 144.878 -45.922 304.989 1.00 46.97 ATOM 118 CA PRO M 339 141.419 -45.680 306.650 1.00 53.92 ATOM 119 CA TYR M 340 141.903 -42.071 307.822 1.00 65.09 ATOM 120 CA GLN M 341 142.841 -41.060 304.265 1.00 68.81 ATOM 121 CA SER M 342 140.072 -42.914 302.421 1.00 82.57 ATOM 122 CA ILE M 343 137.302 -43.718 304.916 1.00 72.89 ATOM 123 CA GLY M 344 137.303 -41.193 307.740 1.00 77.76 ATOM 124 CA GLY M 345 136.152 -43.359 310.623 1.00 62.46 ATOM 125 CA VAL M 346 138.124 -45.467 313.096 1.00 62.09 ATOM 126 CA THR M 347 139.105 -49.105 312.656 1.00 59.31 ATOM 127 CA PRO M 348 139.907 -51.402 315.601 1.00 84.77 ATOM 128 CA ALA M 349 143.410 -52.852 315.752 1.00 66.80 ATOM 129 CA GLY M 350 143.723 -56.088 313.789 1.00 72.92 ATOM 130 CA VAL M 351 141.956 -54.891 310.653 1.00 77.97 ATOM 131 CA TYR M 352 144.024 -53.646 307.727 1.00 78.62 ATOM 132 CA LEU M 353 143.170 -51.877 304.525 1.00 63.84 ATOM 133 CA TYR M 354 145.008 -50.863 301.393 1.00 78.32 ATOM 134 CA SER M 355 142.951 -48.903 298.913 1.00 75.37 ATOM 135 CA PHE M 356 143.466 -48.571 295.172 1.00 72.94 ATOM 136 CA ALA M 357 140.644 -46.004 295.204 1.00 92.22 ATOM 137 CA LEU M 358 140.274 -42.429 296.420 1.00 92.61 ATOM 138 CA LYS M 359 136.920 -43.268 298.060 1.00 84.86 ATOM 139 CA PRO M 360 136.649 -47.050 298.712 1.00 83.41 ATOM 140 CA ALA M 361 133.349 -46.635 300.524 1.00 69.83 ATOM 141 CA GLY M 362 131.844 -44.879 297.510 1.00 56.83 ATOM 142 CA ARG M 363 129.810 -46.742 294.896 1.00 70.32 ATOM 143 CA GLN M 364 131.098 -44.628 292.008 1.00 80.57 ATOM 144 CA PRO M 365 134.565 -45.830 290.853 1.00 97.98 ATOM 145 CA SER M 366 137.522 -43.671 291.875 1.00 85.01 ATOM 146 CA GLY M 367 140.631 -45.778 291.584 1.00 78.71 ATOM 147 CA THR M 368 141.037 -49.420 290.658 1.00 74.50 ATOM 148 CA CYS M 369 143.642 -52.110 289.990 1.00 78.95 ATOM 149 CA ASN M 370 143.081 -54.920 287.500 1.00 77.64 ATOM 150 CA PHE M 371 144.135 -58.237 289.021 1.00 66.00 ATOM 151 CA SER M 372 143.034 -60.025 285.859 1.00 63.33 ATOM 152 CA ARG M 373 146.232 -58.589 284.451 1.00 57.63 ATOM 153 CA ILE M 374 148.680 -59.223 287.293 1.00 44.59 ATOM 154 CA ASP M 375 150.223 -62.645 286.800 1.00 47.18 ATOM 155 CA ASN M 376 151.646 -62.546 290.309 1.00 46.54 ATOM 156 CA ALA M 377 150.154 -60.654 293.249 1.00 66.97 ATOM 157 CA THR M 378 151.733 -61.309 296.652 1.00 72.41 ATOM 158 CA LEU M 379 151.328 -59.957 300.178 1.00 90.79 ATOM 159 CA SER M 380 154.637 -59.883 302.045 1.00 61.87 ATOM 160 CA LEU M 381 154.027 -60.076 305.803 1.00 64.96 ATOM 161 CA THR M 382 156.402 -59.728 308.730 1.00 50.84 ATOM 162 CA TYR M 383 155.080 -60.312 312.222 1.00 58.14 ATOM 163 CA LYS M 384 156.129 -58.794 315.541 1.00 57.17 ATOM 164 CA THR M 385 157.986 -60.946 318.051 1.00 50.55 ATOM 165 CA CYS M 386 155.317 -62.131 320.484 1.00 38.21 ATOM 166 CA SER M 387 157.491 -61.908 323.588 1.00 51.04 ATOM 167 CA ILE M 388 155.362 -59.774 325.923 1.00 62.46 ATOM 168 CA ASP M 389 153.921 -61.599 328.924 1.00 67.58 ATOM 169 CA ALA M 390 150.177 -61.417 328.230 1.00 57.76 ATOM 170 CA THR M 391 149.233 -61.831 331.910 1.00 71.76 ATOM 171 CA SER M 392 151.195 -58.744 332.978 1.00 72.33 ATOM 172 CA PRO M 393 149.509 -55.294 332.757 1.00 66.93 ATOM 173 CA ALA M 394 152.803 -53.453 333.329 1.00 47.91 ATOM 174 CA ALA M 395 154.429 -55.287 330.423 1.00 63.70 ATOM 175 CA VAL M 396 151.581 -54.903 327.901 1.00 64.90 ATOM 176 CA LEU M 397 150.974 -51.201 328.681 1.00 55.08 ATOM 177 CA GLY M 398 154.653 -50.224 328.671 1.00 59.71 ATOM 178 CA ASN M 399 156.273 -51.836 325.644 1.00 84.46 ATOM 179 CA THR M 400 157.983 -51.450 322.254 1.00108.50 ATOM 180 CA GLU M 401 156.516 -51.114 318.737 1.00112.21 ATOM 181 CA THR M 402 157.889 -54.398 317.395 1.00 97.87 ATOM 182 CA VAL M 403 156.508 -56.835 319.977 1.00 77.75 ATOM 183 CA THR M 404 153.109 -58.155 321.110 1.00 64.50 ATOM 184 CA ALA M 405 151.898 -60.574 323.769 1.00 50.87 ATOM 185 CA ASN M 406 152.734 -64.290 323.327 1.00 39.79 ATOM 186 CA THR M 407 148.990 -64.737 323.141 1.00 69.34 ATOM 187 CA ALA M 408 149.411 -63.550 319.533 1.00 76.92 ATOM 188 CA THR M 409 150.343 -67.095 318.452 1.00 68.72 ATOM 189 CA LEU M 410 146.662 -68.050 318.312 1.00 77.33 ATOM 190 CA LEU M 411 145.899 -65.529 315.560 1.00 65.29 ATOM 191 CA THR M 412 146.509 -68.023 312.740 1.00 48.25 ATOM 192 CA ALA M 413 143.587 -67.454 310.390 1.00 55.75 ATOM 193 CA LEU M 414 144.638 -64.906 307.752 1.00 44.57 ATOM 194 CA ASN M 415 141.553 -63.598 305.967 1.00 54.42 ATOM 195 CA ILE M 416 142.203 -61.492 302.886 1.00 54.23 ATOM 196 CA TYR M 417 139.352 -59.771 301.071 1.00 72.87 ATOM 197 CA ALA M 418 139.214 -57.919 297.768 1.00 48.34 ATOM 198 CA LYS M 419 136.223 -55.922 296.564 1.00 61.49 ATOM 199 CA ASN M 420 135.958 -55.628 292.811 1.00 57.78 ATOM 200 CA TYR M 421 133.807 -54.201 290.053 1.00 76.15 ATOM 201 CA ASN M 422 132.015 -56.210 287.381 1.00 60.20 ATOM 202 CA VAL M 423 129.195 -55.645 284.923 1.00 61.19 ATOM 203 CA LEU M 424 125.747 -57.218 285.142 1.00 59.72 ATOM 204 CA ARG M 425 124.004 -57.117 281.741 1.00 68.43 ATOM 205 CA ILE M 426 120.247 -57.737 281.649 1.00 43.28 ATOM 206 CA MET M 427 118.226 -58.293 278.506 1.00 55.49 ATOM 207 CA SER M 428 115.538 -60.492 276.982 1.00 78.78 ATOM 208 CA GLY M 429 114.367 -61.654 280.387 1.00 56.95 ATOM 209 CA MET M 430 117.694 -62.784 281.778 1.00 54.85 ATOM 210 CA GLY M 431 120.971 -61.521 283.196 1.00 59.95 ATOM 211 CA GLY M 432 124.609 -62.477 283.507 1.00 71.93 ATOM 212 CA LEU M 433 127.979 -61.140 284.543 1.00 67.45 ATOM 213 CA ALA M 434 130.110 -59.645 281.781 1.00 63.96 ATOM 214 CA TYR M 435 133.325 -61.018 283.269 1.00 65.69 ATOM 215 CA ALA M 436 134.229 -64.304 284.919 1.00 86.57 ATOM 216 CA ASN M 437 137.203 -65.182 287.159 1.00 97.12 TER