HEADER RIBOSOME/Antibiotic 12-NOV-09 3KNK TITLE The structures of viomycin bound to the 70S ribosome. THIS FILE TITLE 2 CONTAINS THE 50S SUBUNIT FOR MOLECULE II. COMPND MOL_ID: 27; COMPND 2 MOLECULE: 50S ribosomal protein L31; COMPND 3 CHAIN: 4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS DBREF 3KNK 4 27 97 UNP Q5SJE1 RL31_THET8 1 71 SEQRES 1 4 31 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 4 31 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 4 31 CYS SER LYS CYS HIS ATOM 1 N VAL 4 36 -21.690-161.616 195.281 1.00116.96 ATOM 2 CA VAL 4 36 -21.796-161.666 196.772 1.00122.46 ATOM 3 C VAL 4 36 -22.657-160.536 197.363 1.00124.49 ATOM 4 O VAL 4 36 -22.386-159.352 197.155 1.00123.13 ATOM 5 CB VAL 4 36 -20.377-161.659 197.430 1.00120.44 ATOM 6 CG1 VAL 4 36 -19.336-161.113 196.441 1.00116.79 ATOM 7 CG2 VAL 4 36 -20.395-160.851 198.728 1.00116.41 ATOM 8 N PRO 4 37 -23.711-160.907 198.121 1.00123.81 ATOM 9 CA PRO 4 37 -24.687-160.032 198.792 1.00119.67 ATOM 10 C PRO 4 37 -24.120-159.151 199.905 1.00118.67 ATOM 11 O PRO 4 37 -23.387-159.623 200.769 1.00119.24 ATOM 12 CB PRO 4 37 -25.714-161.023 199.328 1.00117.96 ATOM 13 CG PRO 4 37 -24.859-162.219 199.656 1.00120.88 ATOM 14 CD PRO 4 37 -23.996-162.322 198.425 1.00122.79 ATOM 15 N ALA 4 38 -24.485-157.875 199.899 1.00116.84 ATOM 16 CA ALA 4 38 -23.981-156.966 200.915 1.00118.60 ATOM 17 C ALA 4 38 -25.037-156.068 201.550 1.00119.19 ATOM 18 O ALA 4 38 -25.842-155.446 200.860 1.00118.44 ATOM 19 CB ALA 4 38 -22.878-156.122 200.330 1.00119.61 ATOM 20 N ARG 4 39 -25.008-155.999 202.876 1.00119.26 ATOM 21 CA ARG 4 39 -25.942-155.182 203.640 1.00122.12 ATOM 22 C ARG 4 39 -25.227-154.010 204.317 1.00124.56 ATOM 23 O ARG 4 39 -24.271-154.214 205.068 1.00126.95 ATOM 24 CB ARG 4 39 -26.615-156.023 204.725 1.00127.07 ATOM 25 CG ARG 4 39 -27.709-156.972 204.266 1.00131.04 ATOM 26 CD ARG 4 39 -28.193-157.768 205.475 1.00141.31 ATOM 27 NE ARG 4 39 -28.434-156.886 206.616 1.00138.09 ATOM 28 CZ ARG 4 39 -29.556-156.202 206.808 1.00135.10 ATOM 29 NH1 ARG 4 39 -30.556-156.309 205.942 1.00129.91 ATOM 30 NH2 ARG 4 39 -29.667-155.388 207.849 1.00134.59 ATOM 31 N ILE 4 40 -25.697-152.789 204.065 1.00121.82 ATOM 32 CA ILE 4 40 -25.099-151.605 204.678 1.00117.18 ATOM 33 C ILE 4 40 -25.921-151.149 205.871 1.00116.93 ATOM 34 O ILE 4 40 -27.129-151.365 205.918 1.00117.41 ATOM 35 CB ILE 4 40 -25.014-150.419 203.708 1.00117.20 ATOM 36 CG1 ILE 4 40 -24.192-150.793 202.473 1.00117.82 ATOM 37 CG2 ILE 4 40 -24.370-149.236 204.409 1.00117.19 ATOM 38 CD1 ILE 4 40 -24.946-151.617 201.459 1.00117.88 ATOM 39 N ILE 4 41 -25.262-150.504 206.827 1.00116.52 ATOM 40 CA ILE 4 41 -25.946-150.033 208.030 1.00117.04 ATOM 41 C ILE 4 41 -25.518-148.652 208.501 1.00116.64 ATOM 42 O ILE 4 41 -24.492-148.462 209.157 1.00119.70 ATOM 43 CB ILE 4 41 -25.754-151.010 209.196 1.00115.78 ATOM 44 CG1 ILE 4 41 -26.474-152.329 208.901 1.00119.56 ATOM 45 CG2 ILE 4 41 -26.256-150.387 210.487 1.00114.60 ATOM 46 CD1 ILE 4 41 -27.975-152.196 208.637 1.00116.69 ATOM 47 N CYS 4 42 -26.367-147.695 208.183 1.00115.18 ATOM 48 CA CYS 4 42 -26.120-146.326 208.500 1.00117.92 ATOM 49 C CYS 4 42 -25.955-146.033 209.956 1.00115.99 ATOM 50 O CYS 4 42 -26.262-146.819 210.861 1.00118.00 ATOM 51 CB CYS 4 42 -27.225-145.455 207.869 1.00115.84 ATOM 52 SG CYS 4 42 -27.477-145.852 206.117 1.00132.99 ATOM 53 N GLY 4 43 -25.343-144.890 210.128 1.00114.09 ATOM 54 CA GLY 4 43 -25.171-144.374 211.436 1.00113.53 ATOM 55 C GLY 4 43 -26.355-143.443 211.451 1.00113.29 ATOM 56 O GLY 4 43 -26.714-142.953 212.498 1.00113.61 ATOM 57 N CYS 4 44 -26.951-143.159 210.298 1.00113.96 ATOM 58 CA CYS 4 44 -28.050-142.203 210.285 1.00114.61 ATOM 59 C CYS 4 44 -29.315-142.928 209.968 1.00120.34 ATOM 60 O CYS 4 44 -30.125-142.433 209.173 1.00122.32 ATOM 61 CB CYS 4 44 -27.861-141.192 209.186 1.00110.20 ATOM 62 SG CYS 4 44 -28.118-141.999 207.560 1.00109.06 ATOM 63 N GLY 4 45 -29.458-144.111 210.555 1.00115.15 ATOM 64 CA GLY 4 45 -30.636-144.934 210.333 1.00112.64 ATOM 65 C GLY 4 45 -30.801-145.837 209.100 1.00120.60 ATOM 66 O GLY 4 45 -30.986-147.059 209.216 1.00121.11 ATOM 67 N ASN 4 46 -30.760-145.229 207.918 1.00119.50 ATOM 68 CA ASN 4 46 -30.959-145.934 206.662 1.00118.95 ATOM 69 C ASN 4 46 -30.245-147.272 206.575 1.00117.93 ATOM 70 O ASN 4 46 -29.249-147.508 207.251 1.00118.34 ATOM 71 CB ASN 4 46 -30.532-145.039 205.508 1.00117.05 ATOM 72 CG ASN 4 46 -30.774-145.676 204.180 1.00117.45 ATOM 73 OD1 ASN 4 46 -30.098-145.371 203.204 1.00120.34 ATOM 74 ND2 ASN 4 46 -31.752-146.562 204.125 1.00113.55 ATOM 75 N VAL 4 47 -30.788-148.162 205.757 1.00115.73 ATOM 76 CA VAL 4 47 -30.201-149.471 205.567 1.00114.59 ATOM 77 C VAL 4 47 -30.164-149.778 204.082 1.00117.50 ATOM 78 O VAL 4 47 -31.106-150.348 203.538 1.00114.33 ATOM 79 CB VAL 4 47 -31.011-150.561 206.278 1.00112.94 ATOM 80 CG1 VAL 4 47 -30.316-151.904 206.106 1.00118.57 ATOM 81 CG2 VAL 4 47 -31.158-150.223 207.749 1.00113.02 ATOM 82 N ILE 4 48 -29.071-149.391 203.428 1.00122.38 ATOM 83 CA ILE 4 48 -28.905-149.630 201.993 1.00125.08 ATOM 84 C ILE 4 48 -28.498-151.090 201.768 1.00125.14 ATOM 85 O ILE 4 48 -27.542-151.568 202.378 1.00123.36 ATOM 86 CB ILE 4 48 -27.799-148.711 201.372 1.00123.12 ATOM 87 CG1 ILE 4 48 -28.033-147.246 201.743 1.00116.77 ATOM 88 CG2 ILE 4 48 -27.793-148.845 199.859 1.00122.07 ATOM 89 CD1 ILE 4 48 -27.559-146.895 203.127 1.00113.11 ATOM 90 N GLU 4 49 -29.225-151.801 200.908 1.00124.92 ATOM 91 CA GLU 4 49 -28.896-153.197 200.616 1.00128.21 ATOM 92 C GLU 4 49 -28.316-153.275 199.196 1.00128.83 ATOM 93 O GLU 4 49 -29.049-153.204 198.204 1.00126.72 ATOM 94 CB GLU 4 49 -30.144-154.089 200.744 1.00131.32 ATOM 95 CG GLU 4 49 -29.819-155.567 201.010 1.00141.12 ATOM 96 CD GLU 4 49 -31.056-156.443 201.209 1.00145.76 ATOM 97 OE1 GLU 4 49 -32.156-155.891 201.436 1.00142.83 ATOM 98 OE2 GLU 4 49 -30.919-157.689 201.150 1.00141.00 ATOM 99 N THR 4 50 -26.992-153.418 199.109 1.00126.83 ATOM 100 CA THR 4 50 -26.294-153.481 197.822 1.00123.34 ATOM 101 C THR 4 50 -25.469-154.755 197.654 1.00126.85 ATOM 102 O THR 4 50 -25.830-155.818 198.159 1.00127.88 ATOM 103 CB THR 4 50 -25.334-152.291 197.656 1.00118.78 ATOM 104 OG1 THR 4 50 -24.174-152.498 198.475 1.00114.90 ATOM 105 CG2 THR 4 50 -26.012-151.003 198.082 1.00120.33 ATOM 106 N TYR 4 51 -24.353-154.635 196.940 1.00125.79 ATOM 107 CA TYR 4 51 -23.475-155.772 196.702 1.00124.64 ATOM 108 C TYR 4 51 -22.014-155.430 196.948 1.00121.25 ATOM 109 O TYR 4 51 -21.622-154.268 196.889 1.00114.46 ATOM 110 CB TYR 4 51 -23.627-156.270 195.268 1.00125.47 ATOM 111 CG TYR 4 51 -25.020-156.716 194.909 1.00127.58 ATOM 112 CD1 TYR 4 51 -26.041-155.788 194.703 1.00124.65 ATOM 113 CD2 TYR 4 51 -25.316-158.068 194.762 1.00130.91 ATOM 114 CE1 TYR 4 51 -27.324-156.195 194.354 1.00132.02 ATOM 115 CE2 TYR 4 51 -26.596-158.489 194.414 1.00135.57 ATOM 116 CZ TYR 4 51 -27.596-157.549 194.208 1.00135.84 ATOM 117 OH TYR 4 51 -28.856-157.960 193.831 1.00125.55 ATOM 118 N SER 4 52 -21.217-156.462 197.217 1.00126.12 ATOM 119 CA SER 4 52 -19.785-156.310 197.471 1.00128.77 ATOM 120 C SER 4 52 -19.165-157.563 198.084 1.00125.79 ATOM 121 O SER 4 52 -19.192-158.641 197.490 1.00120.12 ATOM 122 CB SER 4 52 -19.530-155.128 198.408 1.00123.25 ATOM 123 OG SER 4 52 -20.406-155.166 199.516 1.00121.18 ATOM 124 N THR 4 53 -18.593-157.392 199.273 1.00126.38 ATOM 125 CA THR 4 53 -17.955-158.470 200.012 1.00127.32 ATOM 126 C THR 4 53 -18.060-158.159 201.501 1.00128.61 ATOM 127 O THR 4 53 -17.770-157.040 201.934 1.00122.99 ATOM 128 CB THR 4 53 -16.473-158.623 199.611 1.00126.30 ATOM 129 OG1 THR 4 53 -15.852-157.330 199.559 1.00123.95 ATOM 130 CG2 THR 4 53 -16.359-159.321 198.249 1.00120.13 ATOM 131 N LYS 4 54 -18.483-159.170 202.261 1.00134.02 ATOM 132 CA LYS 4 54 -18.698-159.097 203.709 1.00134.63 ATOM 133 C LYS 4 54 -19.812-158.096 204.020 1.00131.93 ATOM 134 O LYS 4 54 -19.599-156.879 204.029 1.00131.39 ATOM 135 CB LYS 4 54 -17.397-158.767 204.463 1.00132.10 ATOM 136 CG LYS 4 54 -16.826-157.373 204.320 1.00129.47 ATOM 137 CD LYS 4 54 -15.524-157.324 205.094 1.00127.41 ATOM 138 CE LYS 4 54 -14.982-155.926 205.237 1.00121.58 ATOM 139 NZ LYS 4 54 -13.772-155.968 206.100 1.00113.44 ATOM 140 N PRO 4 55 -21.031-158.618 204.264 1.00127.17 ATOM 141 CA PRO 4 55 -22.288-157.924 204.573 1.00125.94 ATOM 142 C PRO 4 55 -22.375-157.191 205.905 1.00122.70 ATOM 143 O PRO 4 55 -23.467-157.011 206.441 1.00121.76 ATOM 144 CB PRO 4 55 -23.342-159.031 204.484 1.00125.40 ATOM 145 CG PRO 4 55 -22.657-160.143 203.731 1.00125.49 ATOM 146 CD PRO 4 55 -21.258-160.072 204.253 1.00124.01 ATOM 147 N GLU 4 56 -21.240-156.765 206.436 1.00121.87 ATOM 148 CA GLU 4 56 -21.255-156.046 207.696 1.00121.57 ATOM 149 C GLU 4 56 -20.576-154.703 207.479 1.00121.70 ATOM 150 O GLU 4 56 -19.376-154.627 207.216 1.00121.03 ATOM 151 CB GLU 4 56 -20.540-156.859 208.776 1.00123.43 ATOM 152 CG GLU 4 56 -20.884-156.450 210.203 1.00127.88 ATOM 153 CD GLU 4 56 -19.763-155.693 210.877 1.00130.09 ATOM 154 OE1 GLU 4 56 -19.362-154.634 210.350 1.00125.34 ATOM 155 OE2 GLU 4 56 -19.283-156.159 211.933 1.00131.62 ATOM 156 N ILE 4 57 -21.366-153.643 207.577 1.00124.85 ATOM 157 CA ILE 4 57 -20.867-152.293 207.380 1.00127.03 ATOM 158 C ILE 4 57 -21.497-151.310 208.372 1.00125.19 ATOM 159 O ILE 4 57 -22.659-150.916 208.221 1.00125.49 ATOM 160 CB ILE 4 57 -21.139-151.834 205.917 1.00125.66 ATOM 161 CG1 ILE 4 57 -20.116-152.472 204.966 1.00121.95 ATOM 162 CG2 ILE 4 57 -21.115-150.317 205.818 1.00122.46 ATOM 163 CD1 ILE 4 57 -18.704-151.933 205.099 1.00114.60 ATOM 164 N TYR 4 58 -20.722-150.933 209.391 1.00124.03 ATOM 165 CA TYR 4 58 -21.163-149.984 210.413 1.00122.03 ATOM 166 C TYR 4 58 -20.840-148.578 209.926 1.00119.65 ATOM 167 O TYR 4 58 -19.692-148.137 209.982 1.00115.19 ATOM 168 CB TYR 4 58 -20.443-150.249 211.739 1.00124.92 ATOM 169 CG TYR 4 58 -20.987-151.418 212.544 1.00129.63 ATOM 170 CD1 TYR 4 58 -20.176-152.086 213.465 1.00129.76 ATOM 171 CD2 TYR 4 58 -22.308-151.849 212.397 1.00127.51 ATOM 172 CE1 TYR 4 58 -20.663-153.159 214.219 1.00128.50 ATOM 173 CE2 TYR 4 58 -22.808-152.924 213.150 1.00127.92 ATOM 174 CZ TYR 4 58 -21.977-153.575 214.055 1.00130.80 ATOM 175 OH TYR 4 58 -22.451-154.654 214.772 1.00131.58 ATOM 176 N VAL 4 59 -21.865-147.879 209.449 1.00118.64 ATOM 177 CA VAL 4 59 -21.707-146.528 208.923 1.00115.24 ATOM 178 C VAL 4 59 -21.810-145.406 209.943 1.00117.30 ATOM 179 O VAL 4 59 -22.635-145.449 210.851 1.00119.07 ATOM 180 CB VAL 4 59 -22.745-146.240 207.807 1.00112.12 ATOM 181 CG1 VAL 4 59 -23.043-144.747 207.733 1.00112.86 ATOM 182 CG2 VAL 4 59 -22.218-146.740 206.465 1.00110.16 ATOM 183 N GLU 4 60 -20.946-144.407 209.764 1.00117.68 ATOM 184 CA GLU 4 60 -20.888-143.192 210.580 1.00116.79 ATOM 185 C GLU 4 60 -21.313-142.083 209.619 1.00117.92 ATOM 186 O GLU 4 60 -20.496-141.532 208.882 1.00123.15 ATOM 187 CB GLU 4 60 -19.458-142.894 211.057 1.00115.80 ATOM 188 CG GLU 4 60 -19.013-143.547 212.356 1.00125.35 ATOM 189 CD GLU 4 60 -18.334-144.894 212.164 1.00131.49 ATOM 190 OE1 GLU 4 60 -17.675-145.090 211.118 1.00128.40 ATOM 191 OE2 GLU 4 60 -18.441-145.747 213.076 1.00128.83 ATOM 192 N VAL 4 61 -22.591-141.754 209.622 1.00113.65 ATOM 193 CA VAL 4 61 -23.100-140.736 208.725 1.00115.72 ATOM 194 C VAL 4 61 -23.205-141.213 207.293 1.00116.64 ATOM 195 O VAL 4 61 -22.240-141.593 206.624 1.00112.92 ATOM 196 CB VAL 4 61 -22.292-139.423 208.770 1.00116.74 ATOM 197 CG1 VAL 4 61 -22.669-138.541 207.568 1.00119.89 ATOM 198 CG2 VAL 4 61 -22.616-138.674 210.055 1.00121.38 ATOM 199 N CYS 4 62 -24.449-141.160 206.857 1.00119.84 ATOM 200 CA CYS 4 62 -24.934-141.587 205.547 1.00118.54 ATOM 201 C CYS 4 62 -25.114-140.483 204.525 1.00110.25 ATOM 202 O CYS 4 62 -24.678-139.359 204.699 1.00105.07 ATOM 203 CB CYS 4 62 -26.296-142.189 205.774 1.00121.11 ATOM 204 SG CYS 4 62 -27.023-141.054 207.028 1.00116.54 ATOM 205 N SER 4 63 -25.813-140.841 203.458 1.00107.91 ATOM 206 CA SER 4 63 -26.105-139.903 202.403 1.00110.36 ATOM 207 C SER 4 63 -27.438-139.388 202.876 1.00118.89 ATOM 208 O SER 4 63 -28.329-139.118 202.082 1.00125.55 ATOM 209 CB SER 4 63 -26.260-140.609 201.053 1.00105.34 ATOM 210 OG SER 4 63 -27.410-141.429 201.046 1.00 96.61 ATOM 211 N LYS 4 64 -27.575-139.336 204.202 1.00119.04 ATOM 212 CA LYS 4 64 -28.766-138.824 204.888 1.00115.49 ATOM 213 C LYS 4 64 -28.241-137.875 205.964 1.00109.15 ATOM 214 O LYS 4 64 -28.762-137.837 207.077 1.00101.40 ATOM 215 CB LYS 4 64 -29.579-139.940 205.574 1.00119.28 ATOM 216 CG LYS 4 64 -30.737-140.528 204.769 1.00118.79 ATOM 217 CD LYS 4 64 -31.775-141.205 205.687 1.00113.72 ATOM 218 CE LYS 4 64 -33.046-141.595 204.918 1.00 99.29 ATOM 219 NZ LYS 4 64 -34.184-142.069 205.773 1.00 89.77 ATOM 220 N CYS 4 65 -27.195-137.127 205.617 1.00114.80 ATOM 221 CA CYS 4 65 -26.548-136.174 206.522 1.00114.49 ATOM 222 C CYS 4 65 -25.850-135.046 205.730 1.00110.88 ATOM 223 O CYS 4 65 -25.093-134.247 206.282 1.00101.41 ATOM 224 CB CYS 4 65 -25.521-136.906 207.400 1.00111.66 ATOM 225 SG CYS 4 65 -26.185-138.169 208.536 1.00 96.41 ATOM 226 N HIS 4 66 -26.118-134.986 204.430 1.00113.15 ATOM 227 ZN ZN 4 6 -26.662-143.116 205.993 1.00147.42 TER