HEADER PROTEIN BINDING 31-DEC-69 3PHD TITLE Crystal structure of human HDAC6 in complex with ubiquitin COMPND MOL_ID: 2; COMPND 2 MOLECULE: Polyubiquitin; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU G 15 REMARK 465 GLU G 16 REMARK 465 SER G 20 REMARK 465 ASP G 21 REMARK 465 GLN G 31 REMARK 465 ASP G 32 REMARK 465 LYS G 33 REMARK 465 GLU G 34 REMARK 465 GLY G 35 REMARK 465 ILE G 36 REMARK 465 PRO G 37 REMARK 465 PRO G 38 REMARK 465 ASP G 39 REMARK 465 ARG G 42 REMARK 465 ALA G 46 REMARK 465 GLY G 47 REMARK 465 LYS G 48 REMARK 465 GLN G 49 REMARK 465 LEU G 50 REMARK 465 GLU G 51 REMARK 465 ASP G 52 REMARK 465 GLY G 53 REMARK 465 ARG G 54 REMARK 465 THR G 55 REMARK 465 LEU G 56 REMARK 465 SER G 57 REMARK 465 ASP G 58 REMARK 465 TYR G 59 REMARK 465 ASN G 60 REMARK 465 ILE G 61 REMARK 465 GLN G 62 REMARK 465 LYS G 63 DBREF 3PHD G 1 76 UNP P62988 UBB_HUMAN 1 76 SEQRES 1 G 72 VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL SEQRES 2 G 72 GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE SEQRES 3 G 72 GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU SEQRES 4 G 72 ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SEQRES 5 G 72 SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU SEQRES 6 G 72 VAL LEU ARG LEU ARG GLY GLY ATOM 1 N VAL G 5 -24.648 32.224 -9.340 1.00118.35 ATOM 2 CA VAL G 5 -23.513 32.597 -10.187 1.00118.38 ATOM 3 C VAL G 5 -23.622 34.039 -10.690 1.00122.69 ATOM 4 O VAL G 5 -24.600 34.377 -11.361 1.00122.56 ATOM 5 CB VAL G 5 -23.281 31.596 -11.343 1.00122.08 ATOM 6 N LYS G 6 -22.624 34.891 -10.358 1.00119.31 ATOM 7 CA LYS G 6 -22.604 36.299 -10.777 1.00118.94 ATOM 8 C LYS G 6 -21.553 36.611 -11.865 1.00121.94 ATOM 9 O LYS G 6 -20.378 36.257 -11.723 1.00121.12 ATOM 10 CB LYS G 6 -22.482 37.247 -9.570 1.00121.04 ATOM 11 N THR G 7 -22.002 37.265 -12.957 1.00117.99 ATOM 12 CA THR G 7 -21.173 37.674 -14.094 1.00117.54 ATOM 13 C THR G 7 -20.213 38.801 -13.693 1.00121.87 ATOM 14 O THR G 7 -20.526 39.577 -12.786 1.00121.05 ATOM 15 CB THR G 7 -22.064 38.109 -15.265 1.00120.30 ATOM 16 N LEU G 8 -19.058 38.908 -14.387 1.00118.99 ATOM 17 CA LEU G 8 -18.050 39.950 -14.150 1.00118.89 ATOM 18 C LEU G 8 -18.648 41.366 -14.295 1.00124.02 ATOM 19 O LEU G 8 -18.171 42.294 -13.632 1.00123.57 ATOM 20 CB LEU G 8 -16.845 39.763 -15.087 1.00118.72 ATOM 21 N THR G 9 -19.729 41.500 -15.123 1.00121.21 ATOM 22 CA THR G 9 -20.489 42.731 -15.407 1.00120.88 ATOM 23 C THR G 9 -21.478 43.137 -14.289 1.00124.84 ATOM 24 O THR G 9 -22.009 44.251 -14.326 1.00124.01 ATOM 25 CB THR G 9 -21.197 42.614 -16.758 1.00125.40 ATOM 26 N GLY G 10 -21.707 42.238 -13.325 1.00121.62 ATOM 27 CA GLY G 10 -22.601 42.461 -12.191 1.00121.51 ATOM 28 C GLY G 10 -23.899 41.677 -12.227 1.00125.97 ATOM 29 O GLY G 10 -24.568 41.547 -11.196 1.00125.12 ATOM 30 N LYS G 11 -24.267 41.154 -13.421 1.00123.50 ATOM 31 CA LYS G 11 -25.490 40.380 -13.666 1.00123.39 ATOM 32 C LYS G 11 -25.538 39.056 -12.885 1.00127.17 ATOM 33 O LYS G 11 -24.491 38.476 -12.573 1.00126.22 ATOM 34 CB LYS G 11 -25.690 40.144 -15.173 1.00125.85 ATOM 35 N THR G 12 -26.763 38.591 -12.561 1.00123.88 ATOM 36 CA THR G 12 -26.970 37.355 -11.808 1.00123.68 ATOM 37 C THR G 12 -27.684 36.278 -12.639 1.00127.02 ATOM 38 O THR G 12 -28.755 36.524 -13.206 1.00126.78 ATOM 39 CB THR G 12 -27.591 37.644 -10.421 1.00132.13 ATOM 40 OG1 THR G 12 -26.899 38.736 -9.804 1.00131.77 ATOM 41 CG2 THR G 12 -27.555 36.432 -9.493 1.00130.21 ATOM 42 N ILE G 13 -27.053 35.087 -12.712 1.00122.66 ATOM 43 CA ILE G 13 -27.548 33.905 -13.421 1.00122.09 ATOM 44 C ILE G 13 -28.288 32.974 -12.442 1.00126.04 ATOM 45 O ILE G 13 -27.960 32.950 -11.247 1.00125.46 ATOM 46 CB ILE G 13 -26.393 33.183 -14.155 1.00124.89 ATOM 47 N THR G 14 -29.288 32.215 -12.947 1.00122.18 ATOM 48 CA THR G 14 -30.093 31.310 -12.121 1.00131.78 ATOM 49 C THR G 14 -29.907 29.835 -12.527 1.00147.92 ATOM 50 O THR G 14 -29.524 28.999 -11.703 1.00103.62 ATOM 51 CB THR G 14 -31.563 31.777 -12.088 1.00135.05 ATOM 52 OG1 THR G 14 -31.627 33.207 -12.163 1.00130.30 ATOM 53 CG2 THR G 14 -32.304 31.292 -10.847 1.00133.06 ATOM 54 N VAL G 17 -30.304 23.498 -10.830 1.00115.22 ATOM 55 CA VAL G 17 -29.599 22.963 -11.996 1.00115.06 ATOM 56 C VAL G 17 -28.323 22.150 -11.644 1.00120.28 ATOM 57 O VAL G 17 -27.662 21.630 -12.551 1.00120.03 ATOM 58 CB VAL G 17 -29.279 24.084 -12.975 1.00115.52 ATOM 59 N GLU G 18 -28.000 22.019 -10.330 1.00117.32 ATOM 60 CA GLU G 18 -26.843 21.269 -9.805 1.00117.39 ATOM 61 C GLU G 18 -27.106 20.693 -8.384 1.00122.15 ATOM 62 O GLU G 18 -27.958 21.224 -7.655 1.00122.41 ATOM 63 CB GLU G 18 -25.602 22.154 -9.795 1.00118.02 ATOM 64 N PRO G 19 -26.679 19.433 -8.136 1.00117.78 ATOM 65 CA PRO G 19 -25.717 19.171 -7.047 1.00128.46 ATOM 66 C PRO G 19 -24.804 17.988 -7.374 1.00147.31 ATOM 67 O PRO G 19 -23.978 17.572 -6.558 1.00105.82 ATOM 68 CB PRO G 19 -26.615 18.879 -5.833 1.00129.94 ATOM 69 N THR G 22 -17.381 18.921 -8.744 1.00153.09 ATOM 70 CA THR G 22 -16.037 19.284 -9.195 1.00152.77 ATOM 71 C THR G 22 -15.891 19.133 -10.728 1.00156.69 ATOM 72 O THR G 22 -14.974 18.453 -11.208 1.00155.89 ATOM 73 CB THR G 22 -14.984 18.525 -8.371 1.00158.87 ATOM 74 N ILE G 23 -16.802 19.786 -11.493 1.00153.54 ATOM 75 CA ILE G 23 -16.818 19.702 -12.956 1.00153.37 ATOM 76 C ILE G 23 -17.134 20.981 -13.763 1.00156.78 ATOM 77 O ILE G 23 -17.576 22.009 -13.230 1.00155.74 ATOM 78 CB ILE G 23 -17.664 18.493 -13.432 1.00156.56 ATOM 79 N GLU G 24 -16.902 20.870 -15.086 1.00153.53 ATOM 80 CA GLU G 24 -17.124 21.896 -16.100 1.00153.42 ATOM 81 C GLU G 24 -18.598 21.960 -16.524 1.00157.55 ATOM 82 O GLU G 24 -18.977 22.861 -17.281 1.00156.87 ATOM 83 CB GLU G 24 -16.225 21.627 -17.314 1.00154.81 ATOM 84 N ASN G 25 -19.426 21.007 -16.023 1.00154.65 ATOM 85 CA ASN G 25 -20.870 20.906 -16.273 1.00154.53 ATOM 86 C ASN G 25 -21.597 22.161 -15.772 1.00157.55 ATOM 87 O ASN G 25 -22.571 22.594 -16.395 1.00157.01 ATOM 88 CB ASN G 25 -21.446 19.650 -15.616 1.00156.12 ATOM 89 N VAL G 26 -21.094 22.752 -14.661 1.00153.40 ATOM 90 CA VAL G 26 -21.607 23.987 -14.067 1.00152.82 ATOM 91 C VAL G 26 -21.324 25.171 -15.011 1.00156.07 ATOM 92 O VAL G 26 -22.215 25.992 -15.254 1.00155.46 ATOM 93 CB VAL G 26 -21.011 24.217 -12.661 1.00156.50 ATOM 94 N LYS G 27 -20.092 25.222 -15.574 1.00152.03 ATOM 95 CA LYS G 27 -19.652 26.257 -16.516 1.00151.42 ATOM 96 C LYS G 27 -20.336 26.124 -17.888 1.00154.28 ATOM 97 O LYS G 27 -20.486 27.125 -18.591 1.00153.98 ATOM 98 CB LYS G 27 -18.123 26.232 -16.665 1.00153.71 ATOM 99 N ALA G 28 -20.748 24.891 -18.259 1.00149.53 ATOM 100 CA ALA G 28 -21.421 24.579 -19.523 1.00148.59 ATOM 101 C ALA G 28 -22.793 25.255 -19.650 1.00150.79 ATOM 102 O ALA G 28 -23.153 25.701 -20.744 1.00150.17 ATOM 103 CB ALA G 28 -21.561 23.075 -19.677 1.00149.32 ATOM 104 N LYS G 29 -23.548 25.334 -18.533 1.00146.26 ATOM 105 CA LYS G 29 -24.876 25.953 -18.475 1.00145.59 ATOM 106 C LYS G 29 -24.818 27.473 -18.693 1.00148.52 ATOM 107 O LYS G 29 -25.704 28.033 -19.346 1.00148.05 ATOM 108 CB LYS G 29 -25.564 25.621 -17.143 1.00147.97 ATOM 109 N ILE G 30 -23.758 28.125 -18.161 1.00144.18 ATOM 110 CA ILE G 30 -23.515 29.566 -18.261 1.00157.71 ATOM 111 C ILE G 30 -23.282 30.024 -19.701 1.00171.84 ATOM 112 O ILE G 30 -22.910 29.227 -20.560 1.00131.34 ATOM 113 CB ILE G 30 -22.345 29.976 -17.339 1.00160.75 ATOM 114 N GLN G 40 -17.271 30.370 -22.307 1.00106.71 ATOM 115 CA GLN G 40 -17.049 29.217 -21.430 1.00107.06 ATOM 116 C GLN G 40 -15.549 28.841 -21.240 1.00112.31 ATOM 117 O GLN G 40 -15.239 27.866 -20.532 1.00111.49 ATOM 118 CB GLN G 40 -17.870 28.011 -21.922 1.00108.39 ATOM 119 N GLN G 41 -14.626 29.632 -21.855 1.00109.61 ATOM 120 CA GLN G 41 -13.171 29.419 -21.815 1.00133.58 ATOM 121 C GLN G 41 -12.551 29.807 -20.481 1.00155.45 ATOM 122 O GLN G 41 -11.513 29.257 -20.113 1.00113.48 ATOM 123 CB GLN G 41 -12.470 30.158 -22.967 1.00134.75 ATOM 124 N LEU G 43 -13.558 31.944 -17.270 1.00116.87 ATOM 125 CA LEU G 43 -13.302 30.891 -16.290 1.00116.97 ATOM 126 C LEU G 43 -12.881 31.425 -14.901 1.00122.17 ATOM 127 O LEU G 43 -11.802 32.023 -14.747 1.00122.09 ATOM 128 CB LEU G 43 -12.268 29.885 -16.822 1.00116.92 ATOM 129 N ILE G 44 -13.751 31.187 -13.887 1.00118.45 ATOM 130 CA ILE G 44 -13.553 31.560 -12.483 1.00117.70 ATOM 131 C ILE G 44 -14.405 30.705 -11.540 1.00120.20 ATOM 132 O ILE G 44 -15.611 30.551 -11.754 1.00120.03 ATOM 133 CB ILE G 44 -13.782 33.057 -12.261 1.00120.82 ATOM 134 N PHE G 45 -13.766 30.147 -10.502 1.00115.20 ATOM 135 CA PHE G 45 -14.416 29.283 -9.530 1.00128.56 ATOM 136 C PHE G 45 -14.390 29.900 -8.135 1.00132.93 ATOM 137 O PHE G 45 -14.883 31.010 -7.951 1.00 92.55 ATOM 138 CB PHE G 45 -13.811 27.857 -9.597 1.00130.45 ATOM 139 CG PHE G 45 -12.872 27.391 -8.502 1.00131.88 ATOM 140 CD1 PHE G 45 -13.183 26.280 -7.724 1.00134.61 ATOM 141 CD2 PHE G 45 -11.651 28.027 -8.287 1.00133.52 ATOM 142 CE1 PHE G 45 -12.307 25.835 -6.729 1.00135.21 ATOM 143 CE2 PHE G 45 -10.786 27.592 -7.278 1.00136.08 ATOM 144 CZ PHE G 45 -11.116 26.495 -6.511 1.00134.09 ATOM 145 N GLU G 64 -26.342 24.058 -2.412 1.00123.31 ATOM 146 CA GLU G 64 -27.484 24.737 -1.797 1.00123.27 ATOM 147 C GLU G 64 -27.937 25.967 -2.635 1.00127.30 ATOM 148 O GLU G 64 -27.676 26.006 -3.841 1.00126.78 ATOM 149 CB GLU G 64 -27.139 25.118 -0.344 1.00124.58 ATOM 150 N SER G 65 -28.622 26.958 -2.004 1.00123.88 ATOM 151 CA SER G 65 -29.069 28.203 -2.654 1.00123.71 ATOM 152 C SER G 65 -27.948 29.288 -2.614 1.00127.59 ATOM 153 O SER G 65 -28.212 30.480 -2.837 1.00126.96 ATOM 154 CB SER G 65 -30.356 28.712 -2.008 1.00127.12 ATOM 155 N THR G 66 -26.691 28.835 -2.350 1.00123.60 ATOM 156 CA THR G 66 -25.447 29.603 -2.255 1.00122.83 ATOM 157 C THR G 66 -25.084 30.302 -3.574 1.00126.04 ATOM 158 O THR G 66 -25.437 29.800 -4.646 1.00125.61 ATOM 159 CB THR G 66 -24.321 28.674 -1.800 1.00127.93 ATOM 160 N LEU G 67 -24.367 31.459 -3.488 1.00121.49 ATOM 161 CA LEU G 67 -23.937 32.258 -4.649 1.00120.18 ATOM 162 C LEU G 67 -22.471 32.019 -5.087 1.00121.61 ATOM 163 O LEU G 67 -21.547 32.103 -4.270 1.00120.64 ATOM 164 CB LEU G 67 -24.215 33.756 -4.431 1.00119.94 ATOM 165 N HIS G 68 -22.284 31.694 -6.384 1.00116.41 ATOM 166 CA HIS G 68 -20.983 31.475 -7.033 1.00115.04 ATOM 167 C HIS G 68 -20.553 32.805 -7.660 1.00115.45 ATOM 168 O HIS G 68 -21.419 33.634 -7.960 1.00115.27 ATOM 169 CB HIS G 68 -21.091 30.382 -8.110 1.00115.78 ATOM 170 N LEU G 69 -19.232 33.041 -7.833 1.00108.80 ATOM 171 CA LEU G 69 -18.747 34.324 -8.373 1.00106.40 ATOM 172 C LEU G 69 -17.629 34.215 -9.440 1.00107.05 ATOM 173 O LEU G 69 -16.637 33.519 -9.212 1.00106.10 ATOM 174 CB LEU G 69 -18.349 35.273 -7.212 1.00105.60 ATOM 175 CG LEU G 69 -19.524 35.811 -6.376 1.00108.76 ATOM 176 CD1 LEU G 69 -19.331 35.590 -4.901 1.00108.12 ATOM 177 CD2 LEU G 69 -19.890 37.220 -6.753 1.00110.08 ATOM 178 N VAL G 70 -17.806 34.902 -10.602 1.00101.64 ATOM 179 CA VAL G 70 -16.844 34.951 -11.721 1.00100.89 ATOM 180 C VAL G 70 -15.871 36.163 -11.603 1.00103.52 ATOM 181 O VAL G 70 -16.315 37.317 -11.636 1.00103.19 ATOM 182 CB VAL G 70 -17.544 34.885 -13.101 1.00104.79 ATOM 183 N LEU G 71 -14.544 35.890 -11.466 1.00 98.36 ATOM 184 CA LEU G 71 -13.487 36.886 -11.247 1.00 96.80 ATOM 185 C LEU G 71 -12.275 36.921 -12.243 1.00 98.84 ATOM 186 O LEU G 71 -12.450 37.344 -13.392 1.00 97.31 ATOM 187 CB LEU G 71 -13.034 36.839 -9.772 1.00 96.39 ATOM 188 N ARG G 72 -11.035 36.585 -11.738 1.00 94.45 ATOM 189 CA ARG G 72 -9.688 36.504 -12.386 1.00 92.33 ATOM 190 C ARG G 72 -8.679 35.948 -11.339 1.00 91.14 ATOM 191 O ARG G 72 -8.204 36.700 -10.489 1.00 89.84 ATOM 192 CB ARG G 72 -9.190 37.858 -12.947 1.00 90.13 ATOM 193 CG ARG G 72 -7.855 37.702 -13.668 1.00 93.60 ATOM 194 CD ARG G 72 -6.971 38.943 -13.717 1.00 91.89 ATOM 195 NE ARG G 72 -6.141 38.918 -14.929 1.00 97.57 ATOM 196 CZ ARG G 72 -6.519 39.417 -16.105 1.00110.83 ATOM 197 NH1 ARG G 72 -7.685 40.041 -16.226 1.00106.11 ATOM 198 NH2 ARG G 72 -5.728 39.308 -17.166 1.00 86.78 ATOM 199 N LEU G 73 -8.380 34.632 -11.417 1.00 84.75 ATOM 200 CA LEU G 73 -7.556 33.826 -10.494 1.00 82.97 ATOM 201 C LEU G 73 -6.635 34.535 -9.462 1.00 80.55 ATOM 202 O LEU G 73 -6.802 34.290 -8.255 1.00 80.58 ATOM 203 CB LEU G 73 -6.875 32.628 -11.184 1.00 83.29 ATOM 204 N ARG G 74 -5.693 35.414 -9.915 1.00 70.51 ATOM 205 CA ARG G 74 -4.800 36.135 -8.990 1.00 66.07 ATOM 206 C ARG G 74 -5.025 37.653 -8.979 1.00 64.66 ATOM 207 O ARG G 74 -4.633 38.352 -9.904 1.00 63.69 ATOM 208 CB ARG G 74 -3.340 35.761 -9.218 1.00 58.05 ATOM 209 CG ARG G 74 -2.541 35.921 -7.963 1.00 55.36 ATOM 210 CD ARG G 74 -1.719 34.722 -7.680 1.00 53.20 ATOM 211 NE ARG G 74 -0.637 35.036 -6.754 1.00 51.33 ATOM 212 CZ ARG G 74 -0.647 34.734 -5.465 1.00 66.54 ATOM 213 NH1 ARG G 74 -1.703 34.142 -4.923 1.00 65.11 ATOM 214 NH2 ARG G 74 0.401 35.012 -4.706 1.00 54.33 ATOM 215 N GLY G 75 -5.686 38.127 -7.942 1.00 59.27 ATOM 216 CA GLY G 75 -6.018 39.537 -7.782 1.00 59.50 ATOM 217 C GLY G 75 -4.841 40.435 -7.430 1.00 62.48 ATOM 218 O GLY G 75 -3.734 39.952 -7.146 1.00 61.35 ATOM 219 N GLY G 76 -5.098 41.749 -7.472 1.00 56.73 ATOM 220 CA GLY G 76 -4.099 42.776 -7.242 1.00 56.08 ATOM 221 C GLY G 76 -3.115 42.898 -8.393 1.00 60.12 ATOM 222 O GLY G 76 -2.038 43.501 -8.207 1.00 57.21 ATOM 223 OXT GLY G 76 -3.398 42.364 -9.487 1.00 82.34 TER