HEADER PROTEIN BINDING 31-DEC-69 3PHD TITLE Crystal structure of human HDAC6 in complex with ubiquitin COMPND MOL_ID: 2; COMPND 2 MOLECULE: Polyubiquitin; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE H 13 REMARK 465 THR H 14 REMARK 465 LEU H 15 REMARK 465 GLU H 16 REMARK 465 VAL H 17 REMARK 465 GLU H 18 REMARK 465 ASP H 21 REMARK 465 GLN H 31 REMARK 465 ASP H 32 REMARK 465 LYS H 33 REMARK 465 GLU H 34 REMARK 465 GLY H 35 REMARK 465 ILE H 36 REMARK 465 PRO H 37 REMARK 465 PRO H 38 REMARK 465 ASP H 39 REMARK 465 LYS H 48 REMARK 465 GLN H 49 REMARK 465 LEU H 50 REMARK 465 GLU H 51 REMARK 465 ASP H 52 REMARK 465 GLY H 53 REMARK 465 ARG H 54 REMARK 465 THR H 55 REMARK 465 LEU H 56 REMARK 465 SER H 57 REMARK 465 ASP H 58 REMARK 465 TYR H 59 REMARK 465 ASN H 60 REMARK 465 SER H 65 REMARK 465 THR H 66 REMARK 465 LEU H 67 REMARK 465 HIS H 68 DBREF 3PHD H 1 76 UNP P62988 UBB_HUMAN 1 76 SEQRES 1 H 72 VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL SEQRES 2 H 72 GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE SEQRES 3 H 72 GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU SEQRES 4 H 72 ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SEQRES 5 H 72 SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU SEQRES 6 H 72 VAL LEU ARG LEU ARG GLY GLY ATOM 1 N VAL H 5 3.704 24.512 24.732 1.00 97.96 ATOM 2 CA VAL H 5 2.588 24.063 25.571 1.00 98.17 ATOM 3 C VAL H 5 2.416 24.922 26.838 1.00102.96 ATOM 4 O VAL H 5 3.341 25.009 27.656 1.00101.93 ATOM 5 CB VAL H 5 2.655 22.551 25.897 1.00101.64 ATOM 6 N LYS H 6 1.228 25.562 26.985 1.00100.16 ATOM 7 CA LYS H 6 0.928 26.421 28.133 1.00100.18 ATOM 8 C LYS H 6 -0.087 25.810 29.101 1.00104.36 ATOM 9 O LYS H 6 -1.168 25.400 28.682 1.00103.01 ATOM 10 CB LYS H 6 0.503 27.829 27.686 1.00102.72 ATOM 11 N THR H 7 0.281 25.747 30.400 1.00102.63 ATOM 12 CA THR H 7 -0.527 25.204 31.499 1.00102.89 ATOM 13 C THR H 7 -1.744 26.080 31.782 1.00108.15 ATOM 14 O THR H 7 -1.700 27.288 31.531 1.00107.68 ATOM 15 CB THR H 7 0.332 25.059 32.767 1.00107.86 ATOM 16 N LEU H 8 -2.819 25.473 32.338 1.00105.56 ATOM 17 CA LEU H 8 -4.063 26.161 32.710 1.00105.43 ATOM 18 C LEU H 8 -3.815 27.336 33.682 1.00110.03 ATOM 19 O LEU H 8 -4.584 28.298 33.681 1.00109.76 ATOM 20 CB LEU H 8 -5.087 25.169 33.290 1.00105.23 ATOM 21 N THR H 9 -2.713 27.269 34.464 1.00107.31 ATOM 22 CA THR H 9 -2.279 28.280 35.439 1.00107.29 ATOM 23 C THR H 9 -1.506 29.462 34.815 1.00111.08 ATOM 24 O THR H 9 -1.301 30.474 35.486 1.00110.73 ATOM 25 CB THR H 9 -1.468 27.611 36.555 1.00116.82 ATOM 26 N GLY H 10 -1.097 29.327 33.554 1.00107.58 ATOM 27 CA GLY H 10 -0.357 30.360 32.835 1.00107.48 ATOM 28 C GLY H 10 1.095 30.023 32.539 1.00112.59 ATOM 29 O GLY H 10 1.728 30.689 31.708 1.00112.26 ATOM 30 N LYS H 11 1.638 28.985 33.224 1.00109.57 ATOM 31 CA LYS H 11 3.024 28.512 33.076 1.00109.26 ATOM 32 C LYS H 11 3.319 27.941 31.678 1.00111.85 ATOM 33 O LYS H 11 2.402 27.458 31.005 1.00110.65 ATOM 34 CB LYS H 11 3.371 27.485 34.166 1.00111.95 ATOM 35 N THR H 12 4.596 28.029 31.240 1.00107.93 ATOM 36 CA THR H 12 5.046 27.544 29.927 1.00122.91 ATOM 37 C THR H 12 6.180 26.532 30.128 1.00138.15 ATOM 38 O THR H 12 6.210 25.476 29.499 1.00 94.90 ATOM 39 CB THR H 12 5.459 28.727 29.013 1.00127.20 ATOM 40 OG1 THR H 12 4.478 29.768 29.074 1.00127.17 ATOM 41 CG2 THR H 12 5.654 28.312 27.562 1.00122.80 ATOM 42 N PRO H 19 8.355 15.177 17.808 1.00102.87 ATOM 43 CA PRO H 19 8.511 15.836 16.503 1.00102.81 ATOM 44 C PRO H 19 7.634 15.257 15.385 1.00106.97 ATOM 45 O PRO H 19 7.505 15.891 14.329 1.00106.11 ATOM 46 CB PRO H 19 10.007 15.692 16.208 1.00104.47 ATOM 47 N SER H 20 7.040 14.056 15.612 1.00103.89 ATOM 48 CA SER H 20 6.152 13.344 14.674 1.00139.62 ATOM 49 C SER H 20 5.430 12.198 15.391 1.00162.57 ATOM 50 O SER H 20 4.380 11.740 14.940 1.00120.33 ATOM 51 CB SER H 20 6.931 12.799 13.478 1.00143.32 ATOM 52 N THR H 22 3.275 11.714 18.740 1.00144.77 ATOM 53 CA THR H 22 2.342 11.364 17.670 1.00144.70 ATOM 54 C THR H 22 0.909 11.794 17.997 1.00148.54 ATOM 55 O THR H 22 0.298 12.527 17.212 1.00147.76 ATOM 56 CB THR H 22 2.450 9.876 17.327 1.00152.65 ATOM 57 N ILE H 23 0.378 11.334 19.149 1.00145.31 ATOM 58 CA ILE H 23 -0.965 11.667 19.626 1.00145.07 ATOM 59 C ILE H 23 -0.925 11.979 21.127 1.00148.40 ATOM 60 O ILE H 23 -0.808 13.154 21.486 1.00147.55 ATOM 61 CB ILE H 23 -2.022 10.600 19.230 1.00148.11 ATOM 62 N GLU H 24 -0.965 10.934 21.991 1.00144.54 ATOM 63 CA GLU H 24 -0.899 11.054 23.454 1.00143.95 ATOM 64 C GLU H 24 0.552 11.181 23.944 1.00146.84 ATOM 65 O GLU H 24 0.778 11.443 25.131 1.00146.22 ATOM 66 CB GLU H 24 -1.599 9.863 24.132 1.00145.29 ATOM 67 N ASN H 25 1.529 11.007 23.021 1.00142.79 ATOM 68 CA ASN H 25 2.970 11.108 23.270 1.00142.23 ATOM 69 C ASN H 25 3.342 12.505 23.772 1.00145.35 ATOM 70 O ASN H 25 4.228 12.635 24.625 1.00144.90 ATOM 71 CB ASN H 25 3.757 10.759 22.004 1.00142.66 ATOM 72 N VAL H 26 2.640 13.542 23.250 1.00141.22 ATOM 73 CA VAL H 26 2.799 14.945 23.631 1.00140.64 ATOM 74 C VAL H 26 2.316 15.147 25.076 1.00144.01 ATOM 75 O VAL H 26 3.003 15.800 25.867 1.00143.35 ATOM 76 CB VAL H 26 2.065 15.881 22.646 1.00144.27 ATOM 77 N LYS H 27 1.154 14.544 25.421 1.00140.13 ATOM 78 CA LYS H 27 0.545 14.601 26.752 1.00139.61 ATOM 79 C LYS H 27 1.333 13.781 27.782 1.00142.43 ATOM 80 O LYS H 27 1.282 14.098 28.971 1.00141.77 ATOM 81 CB LYS H 27 -0.922 14.146 26.699 1.00142.01 ATOM 82 N ALA H 28 2.063 12.740 27.323 1.00138.34 ATOM 83 CA ALA H 28 2.880 11.859 28.165 1.00137.73 ATOM 84 C ALA H 28 4.050 12.599 28.830 1.00140.16 ATOM 85 O ALA H 28 4.368 12.313 29.987 1.00139.21 ATOM 86 CB ALA H 28 3.399 10.689 27.345 1.00138.49 ATOM 87 N LYS H 29 4.678 13.552 28.098 1.00135.95 ATOM 88 CA LYS H 29 5.801 14.367 28.576 1.00135.13 ATOM 89 C LYS H 29 5.380 15.323 29.707 1.00137.51 ATOM 90 O LYS H 29 6.134 15.507 30.669 1.00136.90 ATOM 91 CB LYS H 29 6.432 15.145 27.411 1.00137.45 ATOM 92 N ILE H 30 4.159 15.898 29.596 1.00132.72 ATOM 93 CA ILE H 30 3.563 16.821 30.563 1.00133.53 ATOM 94 C ILE H 30 3.345 16.180 31.940 1.00147.91 ATOM 95 O ILE H 30 3.286 14.956 32.063 1.00107.57 ATOM 96 CB ILE H 30 2.255 17.415 29.998 1.00136.34 ATOM 97 N GLN H 40 -2.433 13.073 32.855 1.00110.50 ATOM 98 CA GLN H 40 -2.668 12.767 31.441 1.00111.14 ATOM 99 C GLN H 40 -4.171 12.593 31.048 1.00118.48 ATOM 100 O GLN H 40 -4.492 12.504 29.850 1.00117.73 ATOM 101 CB GLN H 40 -1.821 11.566 30.991 1.00112.10 ATOM 102 N GLN H 41 -5.081 12.565 32.061 1.00116.84 ATOM 103 CA GLN H 41 -6.540 12.435 31.894 1.00116.76 ATOM 104 C GLN H 41 -7.194 13.726 31.351 1.00120.98 ATOM 105 O GLN H 41 -8.228 13.641 30.686 1.00120.00 ATOM 106 CB GLN H 41 -7.201 12.005 33.211 1.00117.91 ATOM 107 N ARG H 42 -6.590 14.911 31.649 1.00118.20 ATOM 108 CA ARG H 42 -7.021 16.243 31.192 1.00118.02 ATOM 109 C ARG H 42 -6.278 16.626 29.884 1.00122.23 ATOM 110 O ARG H 42 -5.044 16.590 29.845 1.00121.55 ATOM 111 CB ARG H 42 -6.795 17.292 32.290 1.00117.46 ATOM 112 N LEU H 43 -7.040 16.963 28.813 1.00119.02 ATOM 113 CA LEU H 43 -6.517 17.267 27.475 1.00118.70 ATOM 114 C LEU H 43 -6.529 18.748 27.027 1.00121.68 ATOM 115 O LEU H 43 -7.067 19.613 27.721 1.00120.29 ATOM 116 CB LEU H 43 -7.154 16.340 26.421 1.00118.84 ATOM 117 N ILE H 44 -5.918 19.010 25.843 1.00118.61 ATOM 118 CA ILE H 44 -5.686 20.319 25.226 1.00118.38 ATOM 119 C ILE H 44 -5.916 20.352 23.698 1.00122.33 ATOM 120 O ILE H 44 -5.950 19.304 23.046 1.00121.70 ATOM 121 CB ILE H 44 -4.218 20.678 25.534 1.00121.55 ATOM 122 N PHE H 45 -6.028 21.577 23.132 1.00119.32 ATOM 123 CA PHE H 45 -6.235 21.843 21.698 1.00119.32 ATOM 124 C PHE H 45 -5.575 23.179 21.303 1.00121.93 ATOM 125 O PHE H 45 -5.647 24.151 22.068 1.00121.27 ATOM 126 CB PHE H 45 -7.744 21.879 21.353 1.00121.30 ATOM 127 CG PHE H 45 -8.135 21.509 19.932 1.00122.75 ATOM 128 CD1 PHE H 45 -8.732 20.284 19.655 1.00125.52 ATOM 129 CD2 PHE H 45 -7.968 22.414 18.885 1.00124.67 ATOM 130 CE1 PHE H 45 -9.122 19.957 18.354 1.00126.45 ATOM 131 CE2 PHE H 45 -8.356 22.086 17.583 1.00127.27 ATOM 132 CZ PHE H 45 -8.932 20.861 17.327 1.00125.52 ATOM 133 N ALA H 46 -4.956 23.219 20.092 1.00117.08 ATOM 134 CA ALA H 46 -4.273 24.395 19.544 1.00116.23 ATOM 135 C ALA H 46 -4.384 24.535 18.010 1.00117.72 ATOM 136 O ALA H 46 -3.544 24.023 17.266 1.00116.95 ATOM 137 CB ALA H 46 -2.817 24.411 19.989 1.00117.13 ATOM 138 N GLY H 47 -5.415 25.257 17.573 1.00113.14 ATOM 139 CA GLY H 47 -5.716 25.523 16.171 1.00126.45 ATOM 140 C GLY H 47 -7.195 25.742 15.919 1.00146.89 ATOM 141 O GLY H 47 -7.881 26.411 16.699 1.00107.06 ATOM 142 N ILE H 61 -1.210 18.641 11.925 1.00134.70 ATOM 143 CA ILE H 61 0.097 18.887 12.540 1.00134.49 ATOM 144 C ILE H 61 0.738 20.231 12.103 1.00137.86 ATOM 145 O ILE H 61 0.451 20.730 11.008 1.00137.42 ATOM 146 CB ILE H 61 1.043 17.679 12.322 1.00137.48 ATOM 147 N GLN H 62 1.594 20.816 12.979 1.00133.42 ATOM 148 CA GLN H 62 2.311 22.078 12.737 1.00132.64 ATOM 149 C GLN H 62 3.615 22.188 13.554 1.00134.70 ATOM 150 O GLN H 62 3.673 21.724 14.697 1.00133.60 ATOM 151 CB GLN H 62 1.402 23.294 12.977 1.00134.02 ATOM 152 N LYS H 63 4.651 22.817 12.951 1.00130.53 ATOM 153 CA LYS H 63 5.989 23.013 13.522 1.00130.03 ATOM 154 C LYS H 63 6.104 24.279 14.405 1.00133.98 ATOM 155 O LYS H 63 6.999 25.106 14.192 1.00133.44 ATOM 156 CB LYS H 63 7.042 23.009 12.398 1.00132.22 ATOM 157 N GLU H 64 5.207 24.401 15.419 1.00130.35 ATOM 158 CA GLU H 64 5.129 25.528 16.363 1.00139.32 ATOM 159 C GLU H 64 6.377 25.668 17.241 1.00149.67 ATOM 160 O GLU H 64 6.684 26.764 17.710 1.00100.43 ATOM 161 CB GLU H 64 3.868 25.424 17.233 1.00140.43 ATOM 162 N LEU H 69 -1.792 24.619 23.594 1.00 86.73 ATOM 163 CA LEU H 69 -2.473 25.296 24.706 1.00 86.61 ATOM 164 C LEU H 69 -3.461 24.371 25.449 1.00 91.39 ATOM 165 O LEU H 69 -4.295 23.734 24.796 1.00 92.47 ATOM 166 CB LEU H 69 -3.178 26.586 24.215 1.00 86.17 ATOM 167 CG LEU H 69 -2.240 27.753 23.883 1.00 89.53 ATOM 168 CD1 LEU H 69 -2.512 28.333 22.511 1.00 88.16 ATOM 169 CD2 LEU H 69 -2.194 28.776 25.002 1.00 91.67 ATOM 170 N VAL H 70 -3.362 24.306 26.807 1.00 86.60 ATOM 171 CA VAL H 70 -4.210 23.482 27.688 1.00 86.36 ATOM 172 C VAL H 70 -5.461 24.223 28.212 1.00 90.80 ATOM 173 O VAL H 70 -5.346 25.209 28.953 1.00 90.62 ATOM 174 CB VAL H 70 -3.414 22.771 28.812 1.00 90.05 ATOM 175 N LEU H 71 -6.653 23.722 27.810 1.00 86.90 ATOM 176 CA LEU H 71 -7.982 24.263 28.107 1.00 86.04 ATOM 177 C LEU H 71 -8.832 23.317 29.000 1.00 89.72 ATOM 178 O LEU H 71 -8.275 22.484 29.708 1.00 88.93 ATOM 179 CB LEU H 71 -8.695 24.527 26.764 1.00 85.63 ATOM 180 N ARG H 72 -10.182 23.487 28.971 1.00 85.92 ATOM 181 CA ARG H 72 -11.228 22.666 29.603 1.00 83.68 ATOM 182 C ARG H 72 -12.503 22.530 28.631 1.00 85.20 ATOM 183 O ARG H 72 -13.624 22.927 28.968 1.00 83.84 ATOM 184 CB ARG H 72 -11.521 23.121 31.043 1.00 80.30 ATOM 185 N LEU H 73 -12.216 22.027 27.379 1.00 80.47 ATOM 186 CA LEU H 73 -12.964 21.562 26.182 1.00 79.95 ATOM 187 C LEU H 73 -13.996 22.435 25.468 1.00 83.41 ATOM 188 O LEU H 73 -13.650 23.103 24.493 1.00 83.96 ATOM 189 CB LEU H 73 -13.467 20.115 26.318 1.00 80.20 ATOM 190 N ARG H 74 -15.283 22.292 25.817 1.00 78.11 ATOM 191 CA ARG H 74 -16.347 23.096 25.221 1.00 75.81 ATOM 192 C ARG H 74 -16.463 24.355 26.094 1.00 76.50 ATOM 193 O ARG H 74 -16.892 24.293 27.255 1.00 75.44 ATOM 194 CB ARG H 74 -17.655 22.298 25.151 1.00 71.94 ATOM 195 CG ARG H 74 -18.764 22.955 24.374 1.00 70.57 ATOM 196 CD ARG H 74 -19.157 22.172 23.149 1.00 58.46 ATOM 197 NE ARG H 74 -20.450 22.649 22.659 1.00 63.31 ATOM 198 CZ ARG H 74 -20.624 23.471 21.628 1.00 75.85 ATOM 199 NH1 ARG H 74 -19.580 23.915 20.938 1.00 57.41 ATOM 200 NH2 ARG H 74 -21.848 23.847 21.270 1.00 65.87 ATOM 201 N GLY H 75 -15.995 25.470 25.547 1.00 70.79 ATOM 202 CA GLY H 75 -15.968 26.728 26.279 1.00 70.14 ATOM 203 C GLY H 75 -17.314 27.397 26.376 1.00 72.21 ATOM 204 O GLY H 75 -18.275 26.955 25.753 1.00 72.31 ATOM 205 N GLY H 76 -17.369 28.462 27.158 1.00 66.50 ATOM 206 CA GLY H 76 -18.580 29.231 27.372 1.00 65.44 ATOM 207 C GLY H 76 -19.537 28.544 28.309 1.00 64.55 ATOM 208 O GLY H 76 -20.674 29.051 28.430 1.00 64.66 ATOM 209 OXT GLY H 76 -19.149 27.519 28.929 1.00 78.45 TER