HEADER CYTOKINE/CYTOKINE RECEPTOR 18-JAN-11 3QD6 TITLE Crystal structure of the CD40 and CD154 (CD40L) complex COMPND MOL_ID: 2; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 5; COMPND 3 CHAIN: R, S, T, U; COMPND 4 FRAGMENT: extracellular ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.50 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER T 106 REMARK 465 PRO T 107 REMARK 465 GLY T 108 REMARK 465 PHE T 109 REMARK 465 GLY T 110 REMARK 465 VAL T 111 DBREF 3QD6 T 21 190 UNP P25942 TNR5_HUMAN 21 190 SEQRES 1 T 25 LEU HIS ARG SER CYS SER PRO GLY PHE GLY VAL LYS GLN SEQRES 2 T 25 ILE ALA THR GLY VAL SER ASP THR ILE CYS GLU PRO ATOM 1 N LEU T 121 -23.216 49.821 -49.764 1.00 71.61 ATOM 2 CA LEU T 121 -22.790 51.206 -49.770 1.00 73.10 ATOM 3 C LEU T 121 -21.688 51.359 -50.812 1.00 74.33 ATOM 4 O LEU T 121 -21.054 50.376 -51.206 1.00 73.26 ATOM 5 CB LEU T 121 -22.282 51.628 -48.374 1.00 72.64 ATOM 6 CG LEU T 121 -20.861 51.265 -47.908 1.00 72.91 ATOM 7 CD1 LEU T 121 -20.641 51.814 -46.500 1.00 71.21 ATOM 8 CD2 LEU T 121 -20.642 49.745 -47.943 1.00 73.05 ATOM 9 N HIS T 122 -21.487 52.591 -51.274 1.00 76.19 ATOM 10 CA HIS T 122 -20.439 52.879 -52.240 1.00 77.56 ATOM 11 C HIS T 122 -19.120 52.903 -51.466 1.00 79.72 ATOM 12 O HIS T 122 -19.070 53.358 -50.319 1.00 80.17 ATOM 13 CB HIS T 122 -20.650 54.249 -52.869 1.00 75.83 ATOM 14 CG HIS T 122 -21.938 54.396 -53.609 1.00 73.74 ATOM 15 ND1 HIS T 122 -22.335 53.523 -54.594 1.00 73.10 ATOM 16 CD2 HIS T 122 -22.874 55.374 -53.576 1.00 73.31 ATOM 17 CE1 HIS T 122 -23.457 53.957 -55.140 1.00 72.71 ATOM 18 NE2 HIS T 122 -23.803 55.081 -54.539 1.00 72.33 ATOM 19 N ARG T 123 -18.052 52.428 -52.092 1.00 81.32 ATOM 20 CA ARG T 123 -16.752 52.409 -51.440 1.00 82.84 ATOM 21 C ARG T 123 -15.938 53.627 -51.836 1.00 83.36 ATOM 22 O ARG T 123 -15.842 53.937 -53.017 1.00 83.89 ATOM 23 CB ARG T 123 -16.014 51.124 -51.826 1.00 83.75 ATOM 24 CG ARG T 123 -16.168 50.740 -53.298 1.00 85.44 ATOM 25 CD ARG T 123 -14.974 51.155 -54.158 1.00 87.19 ATOM 26 NE ARG T 123 -13.841 50.237 -54.032 1.00 89.18 ATOM 27 CZ ARG T 123 -12.977 50.229 -53.017 1.00 90.88 ATOM 28 NH1 ARG T 123 -13.100 51.100 -52.022 1.00 91.85 ATOM 29 NH2 ARG T 123 -11.991 49.339 -52.988 1.00 91.67 ATOM 30 N SER T 124 -15.376 54.334 -50.856 1.00 84.13 ATOM 31 CA SER T 124 -14.547 55.503 -51.156 1.00 85.94 ATOM 32 C SER T 124 -13.390 55.635 -50.169 1.00 86.71 ATOM 33 O SER T 124 -12.990 54.650 -49.542 1.00 86.16 ATOM 34 CB SER T 124 -15.375 56.812 -51.180 1.00 86.69 ATOM 35 OG SER T 124 -14.674 57.892 -51.820 1.00 84.53 ATOM 36 N CYS T 125 -12.861 56.858 -50.042 1.00 87.92 ATOM 37 CA CYS T 125 -11.724 57.149 -49.166 1.00 87.28 ATOM 38 C CYS T 125 -11.521 58.649 -48.976 1.00 85.35 ATOM 39 O CYS T 125 -11.006 59.079 -47.953 1.00 83.41 ATOM 40 CB CYS T 125 -10.453 56.516 -49.760 1.00 88.44 ATOM 41 SG CYS T 125 -10.067 56.939 -51.508 1.00 90.63 ATOM 42 N LYS T 132 -11.854 56.634 -60.671 1.00 77.75 ATOM 43 CA LYS T 132 -12.117 56.818 -62.100 1.00 77.90 ATOM 44 C LYS T 132 -13.592 57.125 -62.362 1.00 78.02 ATOM 45 O LYS T 132 -13.944 58.219 -62.812 1.00 77.39 ATOM 46 CB LYS T 132 -11.703 55.560 -62.881 1.00 78.06 ATOM 47 CG LYS T 132 -12.103 55.551 -64.359 1.00 78.55 ATOM 48 CD LYS T 132 -11.806 54.197 -65.017 1.00 78.65 ATOM 49 CE LYS T 132 -12.072 54.209 -66.531 1.00 78.64 ATOM 50 NZ LYS T 132 -13.484 54.507 -66.899 1.00 77.59 ATOM 51 N GLN T 133 -14.454 56.151 -62.079 1.00 78.78 ATOM 52 CA GLN T 133 -15.892 56.316 -62.280 1.00 78.32 ATOM 53 C GLN T 133 -16.659 56.213 -60.956 1.00 76.83 ATOM 54 O GLN T 133 -16.520 55.223 -60.222 1.00 75.78 ATOM 55 CB GLN T 133 -16.419 55.268 -63.277 1.00 79.48 ATOM 56 CG GLN T 133 -17.236 55.869 -64.419 1.00 80.45 ATOM 57 CD GLN T 133 -18.107 57.033 -63.958 1.00 81.32 ATOM 58 OE1 GLN T 133 -17.601 58.115 -63.631 1.00 81.22 ATOM 59 NE2 GLN T 133 -19.421 56.813 -63.920 1.00 81.21 ATOM 60 N ILE T 134 -17.462 57.240 -60.669 1.00 75.28 ATOM 61 CA ILE T 134 -18.260 57.301 -59.444 1.00 74.57 ATOM 62 C ILE T 134 -19.281 56.152 -59.362 1.00 75.63 ATOM 63 O ILE T 134 -19.303 55.261 -60.224 1.00 76.27 ATOM 64 CB ILE T 134 -18.999 58.654 -59.342 1.00 72.73 ATOM 65 CG1 ILE T 134 -20.377 58.573 -60.011 1.00 71.97 ATOM 66 CG2 ILE T 134 -18.158 59.733 -59.995 1.00 71.77 ATOM 67 CD1 ILE T 134 -20.359 58.104 -61.466 1.00 71.55 ATOM 68 N ALA T 135 -20.135 56.185 -58.338 1.00 75.09 ATOM 69 CA ALA T 135 -21.139 55.141 -58.141 1.00 74.19 ATOM 70 C ALA T 135 -22.591 55.560 -58.436 1.00 73.68 ATOM 71 O ALA T 135 -22.901 56.750 -58.498 1.00 73.67 ATOM 72 CB ALA T 135 -21.032 54.627 -56.739 1.00 73.24 ATOM 73 N THR T 136 -23.468 54.571 -58.622 1.00 72.86 ATOM 74 CA THR T 136 -24.883 54.815 -58.902 1.00 72.04 ATOM 75 C THR T 136 -25.697 53.555 -58.629 1.00 71.31 ATOM 76 O THR T 136 -25.135 52.476 -58.476 1.00 70.46 ATOM 77 CB THR T 136 -25.115 55.256 -60.382 1.00 72.63 ATOM 78 OG1 THR T 136 -26.275 56.102 -60.453 1.00 72.85 ATOM 79 CG2 THR T 136 -25.341 54.042 -61.294 1.00 71.85 ATOM 80 N GLY T 137 -27.019 53.717 -58.572 1.00 71.10 ATOM 81 CA GLY T 137 -27.937 52.615 -58.323 1.00 71.52 ATOM 82 C GLY T 137 -27.466 51.241 -58.760 1.00 72.46 ATOM 83 O GLY T 137 -27.630 50.270 -58.015 1.00 72.26 ATOM 84 N VAL T 138 -26.892 51.154 -59.962 1.00 72.71 ATOM 85 CA VAL T 138 -26.377 49.893 -60.495 1.00 72.69 ATOM 86 C VAL T 138 -24.873 49.965 -60.681 1.00 73.82 ATOM 87 O VAL T 138 -24.232 48.961 -60.984 1.00 73.38 ATOM 88 CB VAL T 138 -26.964 49.581 -61.862 1.00 71.77 ATOM 89 CG1 VAL T 138 -28.415 49.179 -61.738 1.00 72.61 ATOM 90 CG2 VAL T 138 -26.820 50.790 -62.751 1.00 71.50 ATOM 91 N SER T 139 -24.323 51.163 -60.491 1.00 75.46 ATOM 92 CA SER T 139 -22.892 51.436 -60.660 1.00 77.07 ATOM 93 C SER T 139 -21.948 50.886 -59.575 1.00 77.84 ATOM 94 O SER T 139 -21.932 49.688 -59.277 1.00 76.35 ATOM 95 CB SER T 139 -22.704 52.960 -60.788 1.00 76.90 ATOM 96 OG SER T 139 -21.393 53.340 -61.171 1.00 77.60 ATOM 97 N ASP T 140 -21.135 51.795 -59.038 1.00 79.90 ATOM 98 CA ASP T 140 -20.167 51.534 -57.978 1.00 81.85 ATOM 99 C ASP T 140 -18.894 52.384 -58.078 1.00 82.40 ATOM 100 O ASP T 140 -18.159 52.327 -59.067 1.00 82.28 ATOM 101 CB ASP T 140 -19.779 50.057 -57.924 1.00 82.89 ATOM 102 CG ASP T 140 -18.956 49.725 -56.687 1.00 84.74 ATOM 103 OD1 ASP T 140 -19.382 50.074 -55.559 1.00 85.15 ATOM 104 OD2 ASP T 140 -17.878 49.118 -56.839 1.00 85.90 ATOM 105 N THR T 141 -18.643 53.176 -57.040 1.00 83.31 ATOM 106 CA THR T 141 -17.454 54.014 -56.988 1.00 83.94 ATOM 107 C THR T 141 -16.235 53.098 -57.069 1.00 84.85 ATOM 108 O THR T 141 -16.364 51.875 -57.078 1.00 84.39 ATOM 109 CB THR T 141 -17.371 54.832 -55.662 1.00 83.02 ATOM 110 OG1 THR T 141 -17.531 53.955 -54.542 1.00 82.82 ATOM 111 CG2 THR T 141 -18.445 55.898 -55.616 1.00 81.98 ATOM 112 N ILE T 142 -15.053 53.702 -57.131 1.00 86.52 ATOM 113 CA ILE T 142 -13.789 52.964 -57.211 1.00 87.77 ATOM 114 C ILE T 142 -12.628 53.790 -56.611 1.00 87.93 ATOM 115 O ILE T 142 -11.589 53.957 -57.270 1.00 88.25 ATOM 116 CB ILE T 142 -13.451 52.603 -58.702 1.00 87.49 ATOM 117 CG1 ILE T 142 -13.338 53.871 -59.545 1.00 86.31 ATOM 118 CG2 ILE T 142 -14.533 51.698 -59.288 1.00 86.78 ATOM 119 CD1 ILE T 142 -13.238 53.578 -61.001 1.00 87.28 ATOM 120 N CYS T 143 -12.805 54.272 -55.369 1.00 86.78 ATOM 121 CA CYS T 143 -11.808 55.113 -54.701 1.00 86.41 ATOM 122 C CYS T 143 -10.372 54.742 -55.010 1.00 86.96 ATOM 123 O CYS T 143 -10.011 53.554 -55.016 1.00 87.74 ATOM 124 CB CYS T 143 -11.998 55.142 -53.183 1.00 86.34 ATOM 125 SG CYS T 143 -11.848 56.838 -52.513 1.00 88.00 ATOM 126 N GLU T 144 -9.569 55.790 -55.249 1.00 86.49 ATOM 127 CA GLU T 144 -8.147 55.704 -55.605 1.00 84.07 ATOM 128 C GLU T 144 -7.197 55.957 -54.425 1.00 82.12 ATOM 129 O GLU T 144 -7.331 56.960 -53.711 1.00 80.50 ATOM 130 CB GLU T 144 -7.859 56.703 -56.730 1.00 84.53 ATOM 131 CG GLU T 144 -8.768 56.552 -57.966 1.00 85.13 ATOM 132 CD GLU T 144 -8.586 55.214 -58.692 1.00 85.65 ATOM 133 OE1 GLU T 144 -7.421 54.855 -58.988 1.00 85.28 ATOM 134 OE2 GLU T 144 -9.607 54.533 -58.971 1.00 85.02 ATOM 135 N PRO T 145 -6.219 55.041 -54.219 1.00 81.02 ATOM 136 CA PRO T 145 -5.209 55.086 -53.149 1.00 79.77 ATOM 137 C PRO T 145 -4.363 56.365 -53.127 1.00 78.28 ATOM 138 O PRO T 145 -4.526 57.159 -52.178 1.00 77.35 ATOM 139 CB PRO T 145 -4.360 53.834 -53.422 1.00 79.45 ATOM 140 CG PRO T 145 -5.326 52.894 -54.057 1.00 78.69 ATOM 141 CD PRO T 145 -6.052 53.813 -55.023 1.00 80.00 TER