HEADER OXIDOREDUCTASE 30-JAN-11 3QJT TITLE The structure of and photolytic induced changes of carbon monoxide TITLE 2 binding to the cytochrome ba3-oxidase from Thermus thermophilus COMPND MOL_ID: 3; COMPND 2 MOLECULE: Cytochrome c oxidase polypeptide 2A; COMPND 3 CHAIN: C; COMPND 4 EC: 1.9.3.1; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.95 ANGSTORMS DBREF 3QJT C 1 34 UNP P82543 COXA_THET8 1 34 SEQRES 1 C 33 GLU GLU LYS PRO LYS GLY ALA LEU ALA VAL ILE LEU VAL SEQRES 2 C 33 LEU THR LEU THR ILE LEU VAL PHE TRP LEU GLY VAL TYR SEQRES 3 C 33 ALA VAL PHE PHE ALA ARG GLY ATOM 1 N GLU C 2 -16.552 7.684 -34.008 1.00113.91 ATOM 2 CA GLU C 2 -16.996 8.047 -35.379 1.00148.75 ATOM 3 C GLU C 2 -16.933 9.574 -35.613 1.00208.79 ATOM 4 O GLU C 2 -15.840 10.155 -35.632 1.00141.52 ATOM 5 CB GLU C 2 -18.384 7.440 -35.665 1.00153.57 ATOM 6 CG GLU C 2 -19.437 7.583 -34.540 1.00189.69 ATOM 7 CD GLU C 2 -20.489 8.666 -34.819 1.00205.13 ATOM 8 OE1 GLU C 2 -20.909 8.807 -35.993 1.00191.88 ATOM 9 OE2 GLU C 2 -20.902 9.373 -33.865 1.00129.20 ATOM 10 N GLU C 3 -18.091 10.214 -35.789 1.00207.59 ATOM 11 CA GLU C 3 -18.170 11.674 -35.921 1.00114.30 ATOM 12 C GLU C 3 -18.777 12.410 -34.697 1.00197.96 ATOM 13 O GLU C 3 -18.125 13.287 -34.119 1.00181.27 ATOM 14 CB GLU C 3 -18.902 12.080 -37.217 1.00204.13 ATOM 15 CG GLU C 3 -18.591 13.507 -37.722 1.00133.46 ATOM 16 CD GLU C 3 -17.240 13.615 -38.440 1.00215.17 ATOM 17 OE1 GLU C 3 -17.227 14.096 -39.594 1.00191.23 ATOM 18 OE2 GLU C 3 -16.200 13.221 -37.860 1.00213.88 ATOM 19 N LYS C 4 -19.995 12.057 -34.285 1.00122.35 ATOM 20 CA LYS C 4 -20.811 13.056 -33.587 1.00153.34 ATOM 21 C LYS C 4 -21.384 12.817 -32.182 1.00134.58 ATOM 22 O LYS C 4 -22.036 11.804 -31.930 1.00129.24 ATOM 23 CB LYS C 4 -21.921 13.550 -34.515 1.00145.74 ATOM 24 CG LYS C 4 -21.619 14.885 -35.136 1.00104.66 ATOM 25 CD LYS C 4 -22.883 15.706 -35.219 1.00166.43 ATOM 26 CE LYS C 4 -22.635 17.133 -34.772 1.00172.36 ATOM 27 NZ LYS C 4 -21.671 17.849 -35.670 1.00114.44 ATOM 28 N PRO C 5 -21.172 13.794 -31.278 1.00109.78 ATOM 29 CA PRO C 5 -21.794 13.829 -29.959 1.00100.16 ATOM 30 C PRO C 5 -23.256 14.301 -30.018 1.00173.79 ATOM 31 O PRO C 5 -23.693 15.066 -29.144 1.00116.27 ATOM 32 CB PRO C 5 -20.950 14.860 -29.216 1.00116.94 ATOM 33 CG PRO C 5 -20.544 15.811 -30.282 1.00 89.48 ATOM 34 CD PRO C 5 -20.298 14.963 -31.495 1.00152.19 ATOM 35 N LYS C 6 -23.991 13.855 -31.041 1.00160.60 ATOM 36 CA LYS C 6 -25.408 14.191 -31.203 1.00 98.16 ATOM 37 C LYS C 6 -26.140 14.111 -29.860 1.00125.53 ATOM 38 O LYS C 6 -26.783 15.074 -29.440 1.00 95.16 ATOM 39 CB LYS C 6 -26.075 13.257 -32.214 1.00 85.54 ATOM 40 CG LYS C 6 -25.521 13.329 -33.624 1.00189.07 ATOM 41 CD LYS C 6 -26.540 12.837 -34.662 1.00194.29 ATOM 42 CE LYS C 6 -27.498 13.957 -35.103 1.00193.86 ATOM 43 NZ LYS C 6 -26.870 14.939 -36.043 1.00103.00 ATOM 44 N GLY C 7 -26.006 12.960 -29.197 1.00 94.51 ATOM 45 CA GLY C 7 -26.592 12.695 -27.893 1.00 71.25 ATOM 46 C GLY C 7 -26.321 13.796 -26.899 1.00 78.47 ATOM 47 O GLY C 7 -27.232 14.546 -26.567 1.00 96.06 ATOM 48 N ALA C 8 -25.066 13.922 -26.450 1.00104.47 ATOM 49 CA ALA C 8 -24.693 14.889 -25.390 1.00 73.70 ATOM 50 C ALA C 8 -25.317 16.265 -25.547 1.00 66.58 ATOM 51 O ALA C 8 -25.519 16.963 -24.560 1.00100.76 ATOM 52 CB ALA C 8 -23.185 15.011 -25.235 1.00 59.50 ATOM 53 N LEU C 9 -25.631 16.663 -26.774 1.00 71.07 ATOM 54 CA LEU C 9 -26.275 17.960 -26.975 1.00115.02 ATOM 55 C LEU C 9 -27.770 17.838 -26.787 1.00 88.60 ATOM 56 O LEU C 9 -28.383 18.671 -26.115 1.00 71.82 ATOM 57 CB LEU C 9 -25.968 18.534 -28.357 1.00101.19 ATOM 58 CG LEU C 9 -24.525 18.376 -28.832 1.00 87.31 ATOM 59 CD1 LEU C 9 -24.517 18.159 -30.332 1.00169.09 ATOM 60 CD2 LEU C 9 -23.672 19.573 -28.431 1.00 63.38 ATOM 61 N ALA C 10 -28.351 16.795 -27.381 1.00 94.89 ATOM 62 CA ALA C 10 -29.766 16.528 -27.199 1.00 96.00 ATOM 63 C ALA C 10 -30.057 16.670 -25.708 1.00 69.91 ATOM 64 O ALA C 10 -31.100 17.200 -25.330 1.00 80.78 ATOM 65 CB ALA C 10 -30.130 15.140 -27.712 1.00 67.29 ATOM 66 N VAL C 11 -29.089 16.240 -24.886 1.00109.21 ATOM 67 CA VAL C 11 -29.105 16.363 -23.422 1.00 58.14 ATOM 68 C VAL C 11 -28.979 17.798 -22.960 1.00 50.32 ATOM 69 O VAL C 11 -29.817 18.260 -22.193 1.00 93.37 ATOM 70 CB VAL C 11 -27.948 15.607 -22.768 1.00 64.11 ATOM 71 CG1 VAL C 11 -28.142 15.528 -21.251 1.00 69.64 ATOM 72 CG2 VAL C 11 -27.803 14.227 -23.368 1.00 63.90 ATOM 73 N ILE C 12 -27.936 18.508 -23.393 1.00 81.48 ATOM 74 CA ILE C 12 -27.804 19.918 -22.990 1.00 71.99 ATOM 75 C ILE C 12 -28.874 20.792 -23.629 1.00 60.03 ATOM 76 O ILE C 12 -29.247 21.797 -23.040 1.00 69.43 ATOM 77 CB ILE C 12 -26.416 20.549 -23.269 1.00 68.94 ATOM 78 CG1 ILE C 12 -25.987 20.317 -24.725 1.00 91.33 ATOM 79 CG2 ILE C 12 -25.375 20.018 -22.307 1.00 63.15 ATOM 80 CD1 ILE C 12 -25.249 21.497 -25.373 1.00 67.19 ATOM 81 N LEU C 13 -29.360 20.431 -24.828 1.00116.52 ATOM 82 CA LEU C 13 -30.396 21.246 -25.503 1.00110.63 ATOM 83 C LEU C 13 -31.541 21.299 -24.537 1.00 69.47 ATOM 84 O LEU C 13 -31.980 22.379 -24.152 1.00 86.30 ATOM 85 CB LEU C 13 -30.888 20.675 -26.854 1.00 67.19 ATOM 86 CG LEU C 13 -31.488 21.653 -27.917 1.00104.27 ATOM 87 CD1 LEU C 13 -32.471 21.006 -28.929 1.00 90.30 ATOM 88 CD2 LEU C 13 -32.162 22.882 -27.331 1.00134.37 ATOM 89 N VAL C 14 -31.998 20.112 -24.139 1.00 86.02 ATOM 90 CA VAL C 14 -33.019 19.956 -23.107 1.00114.28 ATOM 91 C VAL C 14 -32.644 20.676 -21.804 1.00 69.48 ATOM 92 O VAL C 14 -33.386 21.571 -21.388 1.00 83.26 ATOM 93 CB VAL C 14 -33.459 18.465 -22.933 1.00 94.62 ATOM 94 CG1 VAL C 14 -33.899 18.149 -21.498 1.00 49.50 ATOM 95 CG2 VAL C 14 -34.563 18.146 -23.944 1.00 54.98 ATOM 96 N LEU C 15 -31.491 20.358 -21.207 1.00 63.19 ATOM 97 CA LEU C 15 -31.036 21.109 -20.027 1.00 48.14 ATOM 98 C LEU C 15 -31.215 22.619 -20.211 1.00 45.01 ATOM 99 O LEU C 15 -31.688 23.307 -19.316 1.00 72.65 ATOM 100 CB LEU C 15 -29.589 20.803 -19.634 1.00 62.26 ATOM 101 CG LEU C 15 -29.043 21.842 -18.620 1.00 71.38 ATOM 102 CD1 LEU C 15 -29.624 21.681 -17.216 1.00 79.47 ATOM 103 CD2 LEU C 15 -27.535 21.852 -18.529 1.00 63.87 ATOM 104 N THR C 16 -30.851 23.131 -21.374 1.00 72.28 ATOM 105 CA THR C 16 -31.093 24.530 -21.674 1.00 95.27 ATOM 106 C THR C 16 -32.586 24.828 -21.687 1.00 84.33 ATOM 107 O THR C 16 -33.031 25.710 -20.962 1.00 83.35 ATOM 108 CB THR C 16 -30.493 24.958 -23.028 1.00130.38 ATOM 109 OG1 THR C 16 -29.133 24.521 -23.116 1.00 98.20 ATOM 110 CG2 THR C 16 -30.555 26.471 -23.183 1.00 68.32 ATOM 111 N LEU C 17 -33.359 24.097 -22.490 1.00102.84 ATOM 112 CA LEU C 17 -34.764 24.452 -22.677 1.00104.72 ATOM 113 C LEU C 17 -35.556 24.417 -21.365 1.00114.10 ATOM 114 O LEU C 17 -36.649 24.967 -21.289 1.00119.25 ATOM 115 CB LEU C 17 -35.442 23.614 -23.778 1.00 69.76 ATOM 116 CG LEU C 17 -35.052 23.782 -25.264 1.00 66.19 ATOM 117 CD1 LEU C 17 -35.758 22.745 -26.092 1.00 98.26 ATOM 118 CD2 LEU C 17 -35.335 25.143 -25.888 1.00 61.97 ATOM 119 N THR C 18 -35.001 23.804 -20.328 1.00 74.94 ATOM 120 CA THR C 18 -35.696 23.773 -19.054 1.00 60.86 ATOM 121 C THR C 18 -35.223 24.885 -18.174 1.00 58.99 ATOM 122 O THR C 18 -35.972 25.368 -17.342 1.00 80.15 ATOM 123 CB THR C 18 -35.454 22.487 -18.341 1.00 68.84 ATOM 124 OG1 THR C 18 -35.804 21.424 -19.224 1.00 66.63 ATOM 125 CG2 THR C 18 -36.288 22.411 -17.045 1.00 64.47 ATOM 126 N ILE C 19 -33.973 25.282 -18.347 1.00 64.05 ATOM 127 CA ILE C 19 -33.539 26.508 -17.730 1.00 65.15 ATOM 128 C ILE C 19 -34.375 27.647 -18.299 1.00 57.56 ATOM 129 O ILE C 19 -34.842 28.494 -17.539 1.00112.10 ATOM 130 CB ILE C 19 -32.023 26.717 -17.826 1.00 62.16 ATOM 131 CG1 ILE C 19 -31.341 25.784 -16.822 1.00 65.68 ATOM 132 CG2 ILE C 19 -31.641 28.178 -17.542 1.00 60.38 ATOM 133 CD1 ILE C 19 -29.825 25.713 -16.925 1.00 98.12 ATOM 134 N LEU C 20 -34.622 27.639 -19.607 1.00 82.89 ATOM 135 CA LEU C 20 -35.412 28.710 -20.242 1.00 93.46 ATOM 136 C LEU C 20 -36.871 28.744 -19.804 1.00 71.20 ATOM 137 O LEU C 20 -37.359 29.786 -19.357 1.00 74.82 ATOM 138 CB LEU C 20 -35.325 28.657 -21.771 1.00 79.61 ATOM 139 CG LEU C 20 -34.094 29.325 -22.379 1.00107.10 ATOM 140 CD1 LEU C 20 -34.402 29.818 -23.806 1.00 67.57 ATOM 141 CD2 LEU C 20 -33.589 30.471 -21.476 1.00104.62 ATOM 142 N VAL C 21 -37.556 27.609 -19.936 1.00 75.97 ATOM 143 CA VAL C 21 -38.944 27.493 -19.503 1.00 75.14 ATOM 144 C VAL C 21 -39.065 27.976 -18.068 1.00 78.65 ATOM 145 O VAL C 21 -39.887 28.844 -17.786 1.00 87.77 ATOM 146 CB VAL C 21 -39.503 26.051 -19.658 1.00101.53 ATOM 147 CG1 VAL C 21 -40.736 25.836 -18.785 1.00 68.47 ATOM 148 CG2 VAL C 21 -39.845 25.776 -21.114 1.00 98.57 ATOM 149 N PHE C 22 -38.228 27.441 -17.177 1.00 71.74 ATOM 150 CA PHE C 22 -38.245 27.862 -15.779 1.00 58.85 ATOM 151 C PHE C 22 -38.019 29.364 -15.667 1.00 60.68 ATOM 152 O PHE C 22 -38.957 30.081 -15.353 1.00110.27 ATOM 153 CB PHE C 22 -37.255 27.067 -14.904 1.00 77.88 ATOM 154 CG PHE C 22 -37.799 25.745 -14.388 1.00 71.82 ATOM 155 CD1 PHE C 22 -38.374 24.806 -15.258 1.00102.98 ATOM 156 CD2 PHE C 22 -37.710 25.424 -13.036 1.00 63.17 ATOM 157 CE1 PHE C 22 -38.864 23.573 -14.782 1.00 74.17 ATOM 158 CE2 PHE C 22 -38.193 24.192 -12.546 1.00 61.07 ATOM 159 CZ PHE C 22 -38.764 23.265 -13.424 1.00 73.70 ATOM 160 N TRP C 23 -36.813 29.850 -15.957 1.00 53.36 ATOM 161 CA TRP C 23 -36.489 31.269 -15.776 1.00 64.48 ATOM 162 C TRP C 23 -37.495 32.247 -16.437 1.00 94.98 ATOM 163 O TRP C 23 -37.959 33.207 -15.813 1.00 72.26 ATOM 164 CB TRP C 23 -35.086 31.536 -16.298 1.00 84.28 ATOM 165 CG TRP C 23 -34.365 32.653 -15.622 1.00 60.70 ATOM 166 CD1 TRP C 23 -33.517 32.551 -14.559 1.00 71.74 ATOM 167 CD2 TRP C 23 -34.394 34.038 -15.981 1.00 56.80 ATOM 168 NE1 TRP C 23 -33.023 33.787 -14.224 1.00 71.89 ATOM 169 CE2 TRP C 23 -33.542 34.719 -15.081 1.00 53.47 ATOM 170 CE3 TRP C 23 -35.062 34.773 -16.977 1.00108.61 ATOM 171 CZ2 TRP C 23 -33.338 36.103 -15.140 1.00 51.79 ATOM 172 CZ3 TRP C 23 -34.859 36.149 -17.042 1.00 82.85 ATOM 173 CH2 TRP C 23 -34.003 36.800 -16.120 1.00 89.38 ATOM 174 N LEU C 24 -37.835 32.006 -17.696 1.00 94.85 ATOM 175 CA LEU C 24 -38.791 32.868 -18.369 1.00 70.96 ATOM 176 C LEU C 24 -40.184 32.754 -17.764 1.00 73.24 ATOM 177 O LEU C 24 -40.819 33.766 -17.481 1.00 86.42 ATOM 178 CB LEU C 24 -38.803 32.602 -19.874 1.00 87.19 ATOM 179 CG LEU C 24 -37.975 33.581 -20.709 1.00 74.44 ATOM 180 CD1 LEU C 24 -36.808 34.179 -19.910 1.00 67.64 ATOM 181 CD2 LEU C 24 -37.503 32.914 -21.997 1.00 78.70 ATOM 182 N GLY C 25 -40.656 31.531 -17.560 1.00 68.64 ATOM 183 CA GLY C 25 -41.908 31.334 -16.853 1.00 69.39 ATOM 184 C GLY C 25 -41.944 32.193 -15.596 1.00 68.22 ATOM 185 O GLY C 25 -42.816 33.053 -15.461 1.00 80.03 ATOM 186 N VAL C 26 -40.975 31.986 -14.702 1.00 58.51 ATOM 187 CA VAL C 26 -40.922 32.714 -13.440 1.00 59.58 ATOM 188 C VAL C 26 -40.948 34.204 -13.719 1.00 57.07 ATOM 189 O VAL C 26 -42.013 34.787 -13.653 1.00 92.49 ATOM 190 CB VAL C 26 -39.754 32.279 -12.513 1.00 46.81 ATOM 191 CG1 VAL C 26 -39.802 33.035 -11.189 1.00 54.28 ATOM 192 CG2 VAL C 26 -39.864 30.835 -12.232 1.00 48.27 ATOM 193 N TYR C 27 -39.808 34.824 -14.018 1.00100.12 ATOM 194 CA TYR C 27 -39.760 36.223 -14.470 1.00 92.62 ATOM 195 C TYR C 27 -41.153 36.888 -14.589 1.00107.99 ATOM 196 O TYR C 27 -41.439 37.882 -13.911 1.00 77.78 ATOM 197 CB TYR C 27 -39.039 36.272 -15.825 1.00 83.58 ATOM 198 CG TYR C 27 -38.374 37.577 -16.149 1.00 44.87 ATOM 199 CD1 TYR C 27 -37.318 38.041 -15.380 1.00 69.19 ATOM 200 CD2 TYR C 27 -38.795 38.352 -17.223 1.00 57.53 ATOM 201 CE1 TYR C 27 -36.690 39.254 -15.663 1.00 64.25 ATOM 202 CE2 TYR C 27 -38.173 39.576 -17.520 1.00 74.43 ATOM 203 CZ TYR C 27 -37.114 40.009 -16.732 1.00 89.29 ATOM 204 OH TYR C 27 -36.475 41.196 -16.991 1.00 87.15 ATOM 205 N ALA C 28 -41.999 36.317 -15.456 1.00 82.04 ATOM 206 CA ALA C 28 -43.364 36.793 -15.701 1.00 79.95 ATOM 207 C ALA C 28 -44.265 36.775 -14.461 1.00 86.32 ATOM 208 O ALA C 28 -45.057 37.701 -14.269 1.00 97.94 ATOM 209 CB ALA C 28 -44.002 36.015 -16.839 1.00 98.06 ATOM 210 N VAL C 29 -44.149 35.742 -13.624 1.00 67.71 ATOM 211 CA VAL C 29 -44.840 35.768 -12.331 1.00 81.47 ATOM 212 C VAL C 29 -44.334 36.942 -11.490 1.00 75.28 ATOM 213 O VAL C 29 -45.135 37.668 -10.911 1.00109.86 ATOM 214 CB VAL C 29 -44.767 34.445 -11.508 1.00 52.73 ATOM 215 CG1 VAL C 29 -45.741 34.532 -10.359 1.00 82.60 ATOM 216 CG2 VAL C 29 -45.133 33.233 -12.337 1.00 43.53 ATOM 217 N PHE C 30 -43.018 37.140 -11.442 1.00 70.29 ATOM 218 CA PHE C 30 -42.442 38.324 -10.815 1.00 50.69 ATOM 219 C PHE C 30 -43.254 39.518 -11.211 1.00 71.59 ATOM 220 O PHE C 30 -43.729 40.267 -10.355 1.00 84.46 ATOM 221 CB PHE C 30 -41.026 38.551 -11.323 1.00 57.94 ATOM 222 CG PHE C 30 -40.300 39.663 -10.630 1.00 48.14 ATOM 223 CD1 PHE C 30 -39.645 39.430 -9.442 1.00 52.90 ATOM 224 CD2 PHE C 30 -40.231 40.923 -11.190 1.00 78.43 ATOM 225 CE1 PHE C 30 -38.973 40.431 -8.810 1.00 82.86 ATOM 226 CE2 PHE C 30 -39.545 41.933 -10.558 1.00 60.10 ATOM 227 CZ PHE C 30 -38.923 41.689 -9.367 1.00 77.20 ATOM 228 N PHE C 31 -43.413 39.669 -12.527 1.00 77.70 ATOM 229 CA PHE C 31 -44.072 40.824 -13.113 1.00 61.00 ATOM 230 C PHE C 31 -45.551 40.818 -12.947 1.00 52.19 ATOM 231 O PHE C 31 -46.104 41.844 -12.602 1.00 82.46 ATOM 232 CB PHE C 31 -43.701 41.015 -14.580 1.00100.64 ATOM 233 CG PHE C 31 -42.494 41.874 -14.766 1.00100.82 ATOM 234 CD1 PHE C 31 -42.567 43.249 -14.560 1.00 96.69 ATOM 235 CD2 PHE C 31 -41.271 41.306 -15.096 1.00 84.52 ATOM 236 CE1 PHE C 31 -41.443 44.048 -14.701 1.00 73.39 ATOM 237 CE2 PHE C 31 -40.149 42.087 -15.235 1.00 85.72 ATOM 238 CZ PHE C 31 -40.233 43.469 -15.039 1.00 81.99 ATOM 239 N ALA C 32 -46.198 39.676 -13.174 1.00 83.19 ATOM 240 CA ALA C 32 -47.645 39.577 -12.958 1.00 64.39 ATOM 241 C ALA C 32 -47.987 40.053 -11.559 1.00 70.44 ATOM 242 O ALA C 32 -49.126 40.411 -11.289 1.00 92.92 ATOM 243 CB ALA C 32 -48.126 38.173 -13.155 1.00 67.19 ATOM 244 N ARG C 33 -46.973 40.063 -10.693 1.00 77.94 ATOM 245 CA ARG C 33 -47.065 40.501 -9.310 1.00 56.49 ATOM 246 C ARG C 33 -46.253 41.808 -9.105 1.00 81.99 ATOM 247 O ARG C 33 -45.618 41.992 -8.058 1.00 97.38 ATOM 248 CB ARG C 33 -46.480 39.418 -8.383 1.00 96.09 ATOM 249 CG ARG C 33 -47.081 37.988 -8.420 1.00109.32 ATOM 250 CD ARG C 33 -46.268 37.077 -7.451 1.00 91.21 ATOM 251 NE ARG C 33 -46.581 35.637 -7.459 1.00 78.17 ATOM 252 CZ ARG C 33 -45.929 34.725 -6.720 1.00 69.06 ATOM 253 NH1 ARG C 33 -46.250 33.441 -6.768 1.00 60.66 ATOM 254 NH2 ARG C 33 -44.943 35.087 -5.916 1.00 77.39 ATOM 255 N GLY C 34 -46.290 42.702 -10.092 1.00 74.07 ATOM 256 CA GLY C 34 -45.353 43.842 -10.214 1.00149.67 ATOM 257 C GLY C 34 -45.210 44.919 -9.140 1.00152.10 ATOM 258 O GLY C 34 -45.764 46.020 -9.265 1.00115.53 ATOM 259 OXT GLY C 34 -44.495 44.743 -8.145 1.00122.04 TER