HEADER ISOMERASE/DNA/ANTIBIOTIC 31-DEC-69 3RAD TITLE Quinolone(Clinafloxacin)-DNA cleavage complex of type IV TITLE 2 topoisomerase from S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 EC: 5.99.1.-; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.35 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 166 REMARK 465 SER C 167 REMARK 465 LYS C 168 REMARK 465 GLY C 169 REMARK 465 LYS C 170 REMARK 465 GLY C 171 REMARK 465 LYS C 172 REMARK 465 LYS C 173 REMARK 465 GLU C 174 REMARK 465 GLU C 175 REMARK 465 VAL C 176 REMARK 465 GLN C 191 REMARK 465 PHE C 192 REMARK 465 GLY C 193 REMARK 465 LYS C 194 REMARK 465 GLY C 195 REMARK 465 ALA C 196 REMARK 465 THR C 197 DBREF 3RAD C 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 C 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 C 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 C 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 C 42 TYR LYS GLY ATOM 1 N PRO C 541 -34.002 43.150 -21.677 1.00130.20 ATOM 2 CA PRO C 541 -35.054 42.190 -22.015 1.00126.33 ATOM 3 C PRO C 541 -36.332 42.846 -22.532 1.00131.33 ATOM 4 O PRO C 541 -36.578 44.033 -22.298 1.00135.97 ATOM 5 CB PRO C 541 -35.327 41.513 -20.675 1.00153.98 ATOM 6 CG PRO C 541 -35.112 42.609 -19.681 1.00160.53 ATOM 7 CD PRO C 541 -34.009 43.489 -20.244 1.00154.06 ATOM 8 N LEU C 542 -37.142 42.048 -23.222 1.00141.38 ATOM 9 CA LEU C 542 -38.390 42.514 -23.809 1.00140.65 ATOM 10 C LEU C 542 -39.604 42.148 -22.950 1.00136.81 ATOM 11 O LEU C 542 -40.588 42.885 -22.933 1.00139.85 ATOM 12 CB LEU C 542 -38.564 41.946 -25.228 1.00103.07 ATOM 13 CG LEU C 542 -37.563 42.338 -26.315 1.00 90.34 ATOM 14 N TYR C 543 -39.536 41.026 -22.233 1.00127.61 ATOM 15 CA TYR C 543 -40.733 40.469 -21.592 1.00138.41 ATOM 16 C TYR C 543 -40.523 39.869 -20.185 1.00151.10 ATOM 17 O TYR C 543 -39.392 39.634 -19.758 1.00151.99 ATOM 18 CB TYR C 543 -41.369 39.423 -22.520 1.00139.89 ATOM 19 CG TYR C 543 -41.610 39.904 -23.945 1.00143.15 ATOM 20 CD1 TYR C 543 -42.841 40.434 -24.328 1.00138.26 ATOM 21 CD2 TYR C 543 -40.608 39.823 -24.907 1.00145.35 ATOM 22 CE1 TYR C 543 -43.064 40.870 -25.623 1.00141.24 ATOM 23 CE2 TYR C 543 -40.821 40.258 -26.206 1.00137.46 ATOM 24 CZ TYR C 543 -42.050 40.780 -26.559 1.00143.30 ATOM 25 OH TYR C 543 -42.267 41.211 -27.853 1.00145.67 ATOM 26 N LYS C 544 -41.630 39.626 -19.479 1.00156.71 ATOM 27 CA LYS C 544 -41.621 38.997 -18.149 1.00142.89 ATOM 28 C LYS C 544 -42.841 38.076 -17.944 1.00132.18 ATOM 29 O LYS C 544 -42.788 37.073 -17.217 1.00109.98 ATOM 30 CB LYS C 544 -41.574 40.064 -17.048 1.00118.35 ATOM 31 N ALA C 556 -38.822 35.449 -14.915 1.00126.33 ATOM 32 CA ALA C 556 -39.143 34.747 -16.153 1.00161.92 ATOM 33 C ALA C 556 -39.006 35.635 -17.403 1.00172.68 ATOM 34 O ALA C 556 -39.950 35.765 -18.185 1.00172.34 ATOM 35 CB ALA C 556 -40.546 34.150 -16.068 1.00153.47 ATOM 36 N TYR C 557 -37.825 36.224 -17.593 1.00127.25 ATOM 37 CA TYR C 557 -37.584 37.150 -18.700 1.00123.09 ATOM 38 C TYR C 557 -37.143 36.450 -19.989 1.00130.26 ATOM 39 O TYR C 557 -36.526 35.387 -19.948 1.00106.72 ATOM 40 CB TYR C 557 -36.516 38.172 -18.313 1.00112.92 ATOM 41 CG TYR C 557 -36.687 38.777 -16.939 1.00124.26 ATOM 42 CD1 TYR C 557 -36.015 38.254 -15.837 1.00119.85 ATOM 43 CD2 TYR C 557 -37.511 39.881 -16.744 1.00134.14 ATOM 44 CE1 TYR C 557 -36.162 38.811 -14.579 1.00113.02 ATOM 45 CE2 TYR C 557 -37.667 40.443 -15.489 1.00132.82 ATOM 46 CZ TYR C 557 -36.989 39.905 -14.410 1.00128.40 ATOM 47 OH TYR C 557 -37.142 40.467 -13.162 1.00120.26 ATOM 48 N ALA C 558 -37.451 37.071 -21.127 1.00143.48 ATOM 49 CA ALA C 558 -37.045 36.575 -22.443 1.00134.34 ATOM 50 C ALA C 558 -36.483 37.723 -23.278 1.00135.36 ATOM 51 O ALA C 558 -36.595 38.881 -22.891 1.00145.38 ATOM 52 CB ALA C 558 -38.225 35.934 -23.158 1.00126.29 ATOM 53 N TRP C 559 -35.887 37.406 -24.424 1.00140.52 ATOM 54 CA TRP C 559 -35.286 38.432 -25.284 1.00139.33 ATOM 55 C TRP C 559 -35.871 38.490 -26.701 1.00145.71 ATOM 56 O TRP C 559 -35.837 39.540 -27.346 1.00130.41 ATOM 57 CB TRP C 559 -33.762 38.264 -25.346 1.00124.35 ATOM 58 CG TRP C 559 -33.046 38.768 -24.127 1.00125.81 ATOM 59 CD1 TRP C 559 -32.195 39.835 -24.060 1.00140.79 ATOM 60 CD2 TRP C 559 -33.125 38.233 -22.797 1.00145.61 ATOM 61 NE1 TRP C 559 -31.735 39.994 -22.773 1.00161.94 ATOM 62 CE2 TRP C 559 -32.290 39.025 -21.979 1.00159.35 ATOM 63 CE3 TRP C 559 -33.815 37.162 -22.221 1.00142.37 ATOM 64 CZ2 TRP C 559 -32.128 38.780 -20.616 1.00142.76 ATOM 65 CZ3 TRP C 559 -33.654 36.920 -20.868 1.00131.86 ATOM 66 CH2 TRP C 559 -32.816 37.727 -20.081 1.00134.68 ATOM 67 N THR C 560 -36.392 37.360 -27.179 1.00156.79 ATOM 68 CA THR C 560 -37.025 37.274 -28.499 1.00149.55 ATOM 69 C THR C 560 -38.444 36.695 -28.398 1.00173.35 ATOM 70 O THR C 560 -38.722 35.868 -27.528 1.00161.63 ATOM 71 CB THR C 560 -36.189 36.419 -29.478 1.00129.56 ATOM 72 N ASP C 561 -39.333 37.129 -29.293 1.00185.71 ATOM 73 CA ASP C 561 -40.743 36.716 -29.268 1.00167.38 ATOM 74 C ASP C 561 -40.926 35.197 -29.256 1.00174.75 ATOM 75 O ASP C 561 -42.027 34.697 -29.007 1.00156.48 ATOM 76 CB ASP C 561 -41.510 37.331 -30.445 1.00141.27 ATOM 77 N GLY C 562 -39.842 34.474 -29.530 1.00177.27 ATOM 78 CA GLY C 562 -39.851 33.024 -29.496 1.00163.96 ATOM 79 C GLY C 562 -39.560 32.485 -28.109 1.00165.26 ATOM 80 O GLY C 562 -40.110 31.455 -27.712 1.00159.99 ATOM 81 N GLU C 563 -38.697 33.185 -27.372 1.00162.77 ATOM 82 CA GLU C 563 -38.336 32.798 -26.006 1.00169.77 ATOM 83 C GLU C 563 -39.472 33.075 -25.021 1.00177.63 ATOM 84 O GLU C 563 -39.427 32.640 -23.867 1.00139.41 ATOM 85 CB GLU C 563 -37.055 33.510 -25.555 1.00143.81 ATOM 86 N LEU C 564 -40.486 33.802 -25.485 1.00188.25 ATOM 87 CA LEU C 564 -41.673 34.071 -24.682 1.00171.89 ATOM 88 C LEU C 564 -42.641 32.886 -24.723 1.00185.21 ATOM 89 O LEU C 564 -43.250 32.540 -23.708 1.00171.35 ATOM 90 CB LEU C 564 -42.368 35.350 -25.157 1.00143.51 ATOM 91 N GLU C 565 -42.776 32.266 -25.896 1.00189.46 ATOM 92 CA GLU C 565 -43.650 31.105 -26.058 1.00165.73 ATOM 93 C GLU C 565 -43.195 29.929 -25.185 1.00180.91 ATOM 94 O GLU C 565 -44.008 29.086 -24.796 1.00178.49 ATOM 95 CB GLU C 565 -43.731 30.686 -27.530 1.00136.15 ATOM 96 N GLU C 566 -41.898 29.888 -24.873 1.00174.99 ATOM 97 CA GLU C 566 -41.320 28.832 -24.035 1.00163.69 ATOM 98 C GLU C 566 -41.624 29.042 -22.555 1.00171.02 ATOM 99 O GLU C 566 -41.674 28.082 -21.780 1.00168.26 ATOM 100 CB GLU C 566 -39.804 28.750 -24.237 1.00143.68 ATOM 101 N LEU C 567 -41.814 30.304 -22.169 1.00175.36 ATOM 102 CA LEU C 567 -42.148 30.655 -20.790 1.00175.56 ATOM 103 C LEU C 567 -43.652 30.548 -20.547 1.00186.09 ATOM 104 O LEU C 567 -44.096 30.432 -19.401 1.00168.46 ATOM 105 CB LEU C 567 -41.651 32.064 -20.446 1.00138.55 ATOM 106 N ARG C 568 -44.428 30.589 -21.630 1.00191.72 ATOM 107 CA ARG C 568 -45.877 30.408 -21.557 1.00179.00 ATOM 108 C ARG C 568 -46.216 29.027 -20.989 1.00184.90 ATOM 109 O ARG C 568 -47.358 28.764 -20.597 1.00158.61 ATOM 110 CB ARG C 568 -46.511 30.596 -22.938 1.00151.87 ATOM 111 N LYS C 569 -45.208 28.156 -20.952 1.00191.20 ATOM 112 CA LYS C 569 -45.313 26.838 -20.329 1.00165.88 ATOM 113 C LYS C 569 -44.932 26.901 -18.845 1.00155.82 ATOM 114 O LYS C 569 -45.401 27.769 -18.100 1.00120.88 ATOM 115 CB LYS C 569 -44.418 25.832 -21.060 1.00133.19 ATOM 116 N LEU C 577 -47.089 38.822 -17.393 1.00123.41 ATOM 117 CA LEU C 577 -46.605 38.824 -18.771 1.00141.00 ATOM 118 C LEU C 577 -46.186 40.219 -19.253 1.00158.83 ATOM 119 O LEU C 577 -46.384 40.554 -20.429 1.00140.54 ATOM 120 CB LEU C 577 -47.674 38.255 -19.708 1.00118.81 ATOM 121 N GLN C 578 -45.593 41.010 -18.352 1.00161.01 ATOM 122 CA GLN C 578 -45.211 42.407 -18.628 1.00150.47 ATOM 123 C GLN C 578 -44.362 42.622 -19.896 1.00160.27 ATOM 124 O GLN C 578 -43.558 41.766 -20.276 1.00157.34 ATOM 125 CB GLN C 578 -44.491 43.012 -17.417 1.00107.31 ATOM 126 N ARG C 579 -44.542 43.777 -20.538 1.00157.35 ATOM 127 CA ARG C 579 -43.791 44.126 -21.748 1.00141.32 ATOM 128 C ARG C 579 -43.000 45.427 -21.571 1.00135.53 ATOM 129 O ARG C 579 -43.577 46.517 -21.540 1.00123.21 ATOM 130 CB ARG C 579 -44.724 44.225 -22.963 1.00115.27 ATOM 131 N TYR C 580 -41.679 45.300 -21.460 1.00122.71 ATOM 132 CA TYR C 580 -40.795 46.439 -21.203 1.00109.81 ATOM 133 C TYR C 580 -40.751 47.431 -22.366 1.00126.96 ATOM 134 O TYR C 580 -40.280 47.101 -23.456 1.00115.32 ATOM 135 CB TYR C 580 -39.373 45.963 -20.853 1.00105.68 ATOM 136 CG TYR C 580 -39.243 45.344 -19.470 1.00146.94 ATOM 137 CD1 TYR C 580 -39.447 46.108 -18.324 1.00174.42 ATOM 138 CD2 TYR C 580 -38.905 44.003 -19.307 1.00150.50 ATOM 139 CE1 TYR C 580 -39.333 45.553 -17.054 1.00161.02 ATOM 140 CE2 TYR C 580 -38.786 43.440 -18.038 1.00138.42 ATOM 141 CZ TYR C 580 -39.003 44.223 -16.920 1.00145.52 ATOM 142 OH TYR C 580 -38.889 43.683 -15.663 1.00151.15 ATOM 143 N LYS C 581 -41.242 48.646 -22.122 1.00140.93 ATOM 144 CA LYS C 581 -41.197 49.713 -23.121 1.00120.20 ATOM 145 C LYS C 581 -39.878 50.473 -23.045 1.00114.02 ATOM 146 O LYS C 581 -39.776 51.592 -23.544 1.00126.67 ATOM 147 CB LYS C 581 -42.358 50.698 -22.938 1.00106.43 ATOM 148 CG LYS C 581 -43.740 50.073 -22.940 1.00108.24 ATOM 149 CD LYS C 581 -44.383 50.150 -21.556 1.00116.56 ATOM 150 N GLY C 582 -38.872 49.876 -22.414 1.00100.80 ATOM 151 CA GLY C 582 -37.567 50.507 -22.322 1.00118.50 ATOM 152 C GLY C 582 -36.939 50.413 -20.948 1.00118.45 ATOM 153 O GLY C 582 -37.572 49.940 -20.005 1.00104.19 TER