HEADER ISOMERASE/DNA/ANTIBIOTIC 31-DEC-69 3RAD TITLE Quinolone(Clinafloxacin)-DNA cleavage complex of type IV TITLE 2 topoisomerase from S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 EC: 5.99.1.-; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.35 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 166 REMARK 465 SER D 167 REMARK 465 LYS D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 LYS D 172 REMARK 465 LYS D 173 REMARK 465 GLU D 174 REMARK 465 GLU D 175 REMARK 465 VAL D 176 REMARK 465 ALA D 177 REMARK 465 PHE D 192 REMARK 465 GLY D 193 REMARK 465 LYS D 194 REMARK 465 GLY D 195 REMARK 465 ALA D 196 REMARK 465 THR D 197 DBREF 3RAD D 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 D 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 D 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 D 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 D 42 TYR LYS GLY ATOM 1 N PRO D 541 -62.224 88.199 -14.337 1.00129.74 ATOM 2 CA PRO D 541 -63.562 87.638 -14.121 1.00129.73 ATOM 3 C PRO D 541 -63.523 86.211 -13.595 1.00127.05 ATOM 4 O PRO D 541 -62.684 85.409 -14.007 1.00130.86 ATOM 5 CB PRO D 541 -64.177 87.659 -15.523 1.00156.57 ATOM 6 CG PRO D 541 -63.009 87.517 -16.442 1.00160.56 ATOM 7 CD PRO D 541 -61.836 88.189 -15.760 1.00152.30 ATOM 8 N LEU D 542 -64.434 85.895 -12.686 1.00133.09 ATOM 9 CA LEU D 542 -64.486 84.553 -12.125 1.00138.37 ATOM 10 C LEU D 542 -65.210 83.618 -13.091 1.00137.86 ATOM 11 O LEU D 542 -64.766 82.495 -13.338 1.00134.20 ATOM 12 CB LEU D 542 -65.153 84.557 -10.740 1.00103.70 ATOM 13 CG LEU D 542 -64.368 85.218 -9.604 1.00 93.91 ATOM 14 N TYR D 543 -66.311 84.101 -13.656 1.00136.37 ATOM 15 CA TYR D 543 -67.165 83.264 -14.483 1.00138.60 ATOM 16 C TYR D 543 -67.408 83.903 -15.845 1.00149.69 ATOM 17 O TYR D 543 -67.142 85.091 -16.039 1.00151.05 ATOM 18 CB TYR D 543 -68.487 83.009 -13.760 1.00133.70 ATOM 19 CG TYR D 543 -68.316 82.841 -12.268 1.00138.95 ATOM 20 CD1 TYR D 543 -68.033 81.599 -11.715 1.00136.22 ATOM 21 CD2 TYR D 543 -68.414 83.931 -11.414 1.00146.84 ATOM 22 CE1 TYR D 543 -67.865 81.446 -10.348 1.00141.88 ATOM 23 CE2 TYR D 543 -68.247 83.788 -10.049 1.00140.92 ATOM 24 CZ TYR D 543 -67.973 82.544 -9.521 1.00141.12 ATOM 25 OH TYR D 543 -67.811 82.404 -8.159 1.00140.86 ATOM 26 N LYS D 544 -67.904 83.105 -16.788 1.00155.85 ATOM 27 CA LYS D 544 -68.211 83.600 -18.126 1.00147.71 ATOM 28 C LYS D 544 -69.362 82.834 -18.778 1.00133.75 ATOM 29 O LYS D 544 -69.133 81.868 -19.507 1.00133.82 ATOM 30 CB LYS D 544 -66.970 83.547 -19.026 1.00129.73 ATOM 31 N TYR D 557 -70.451 87.458 -18.639 1.00129.04 ATOM 32 CA TYR D 557 -69.265 87.987 -17.957 1.00130.17 ATOM 33 C TYR D 557 -69.618 88.563 -16.583 1.00133.40 ATOM 34 O TYR D 557 -70.133 89.679 -16.482 1.00117.17 ATOM 35 CB TYR D 557 -68.548 89.039 -18.800 1.00111.76 ATOM 36 CG TYR D 557 -67.534 88.460 -19.751 1.00117.99 ATOM 37 CD1 TYR D 557 -67.334 89.028 -21.000 1.00128.67 ATOM 38 CD2 TYR D 557 -66.774 87.346 -19.406 1.00122.72 ATOM 39 CE1 TYR D 557 -66.413 88.505 -21.890 1.00123.27 ATOM 40 CE2 TYR D 557 -65.847 86.810 -20.292 1.00129.04 ATOM 41 CZ TYR D 557 -65.672 87.400 -21.538 1.00134.69 ATOM 42 OH TYR D 557 -64.761 86.902 -22.448 1.00119.77 ATOM 43 N ALA D 558 -69.332 87.793 -15.534 1.00137.34 ATOM 44 CA ALA D 558 -69.664 88.185 -14.166 1.00134.38 ATOM 45 C ALA D 558 -68.485 88.003 -13.214 1.00139.81 ATOM 46 O ALA D 558 -67.779 86.994 -13.277 1.00143.56 ATOM 47 CB ALA D 558 -70.861 87.400 -13.670 1.00128.66 ATOM 48 N TRP D 559 -68.297 88.982 -12.327 1.00147.98 ATOM 49 CA TRP D 559 -67.160 89.022 -11.402 1.00142.63 ATOM 50 C TRP D 559 -67.454 88.370 -10.053 1.00146.55 ATOM 51 O TRP D 559 -66.707 87.501 -9.602 1.00136.47 ATOM 52 CB TRP D 559 -66.706 90.467 -11.172 1.00122.51 ATOM 53 CG TRP D 559 -65.824 91.013 -12.247 1.00120.22 ATOM 54 CD1 TRP D 559 -64.525 91.411 -12.116 1.00135.26 ATOM 55 CD2 TRP D 559 -66.169 91.218 -13.622 1.00144.25 ATOM 56 NE1 TRP D 559 -64.044 91.857 -13.319 1.00161.99 ATOM 57 CE2 TRP D 559 -65.037 91.747 -14.267 1.00162.65 ATOM 58 CE3 TRP D 559 -67.331 91.008 -14.377 1.00143.96 ATOM 59 CZ2 TRP D 559 -65.023 92.069 -15.625 1.00147.98 ATOM 60 CZ3 TRP D 559 -67.321 91.328 -15.726 1.00127.52 ATOM 61 CH2 TRP D 559 -66.176 91.852 -16.335 1.00133.80 ATOM 62 N THR D 560 -68.531 88.809 -9.407 1.00153.43 ATOM 63 CA THR D 560 -68.907 88.280 -8.098 1.00144.69 ATOM 64 C THR D 560 -69.988 87.203 -8.227 1.00169.18 ATOM 65 O THR D 560 -70.760 87.200 -9.192 1.00154.16 ATOM 66 CB THR D 560 -69.381 89.399 -7.145 1.00119.58 ATOM 67 N ASP D 561 -70.029 86.288 -7.256 1.00182.80 ATOM 68 CA ASP D 561 -70.969 85.166 -7.273 1.00164.58 ATOM 69 C ASP D 561 -72.405 85.626 -7.543 1.00176.95 ATOM 70 O ASP D 561 -73.201 84.892 -8.137 1.00163.20 ATOM 71 CB ASP D 561 -70.884 84.374 -5.964 1.00124.70 ATOM 72 N GLY D 562 -72.722 86.846 -7.109 1.00178.96 ATOM 73 CA GLY D 562 -74.018 87.451 -7.366 1.00162.73 ATOM 74 C GLY D 562 -74.184 87.895 -8.810 1.00165.17 ATOM 75 O GLY D 562 -75.222 87.641 -9.427 1.00159.46 ATOM 76 N GLU D 563 -73.164 88.561 -9.349 1.00162.38 ATOM 77 CA GLU D 563 -73.168 88.964 -10.752 1.00164.83 ATOM 78 C GLU D 563 -73.322 87.741 -11.662 1.00175.91 ATOM 79 O GLU D 563 -73.516 87.876 -12.874 1.00139.91 ATOM 80 CB GLU D 563 -71.895 89.744 -11.099 1.00139.43 ATOM 81 N LEU D 564 -73.239 86.550 -11.065 1.00187.13 ATOM 82 CA LEU D 564 -73.444 85.294 -11.789 1.00167.58 ATOM 83 C LEU D 564 -74.929 84.938 -11.873 1.00180.45 ATOM 84 O LEU D 564 -75.458 84.737 -12.966 1.00164.22 ATOM 85 CB LEU D 564 -72.662 84.151 -11.133 1.00130.25 ATOM 86 N GLU D 565 -75.593 84.870 -10.718 1.00188.61 ATOM 87 CA GLU D 565 -77.020 84.543 -10.651 1.00167.03 ATOM 88 C GLU D 565 -77.854 85.417 -11.590 1.00178.38 ATOM 89 O GLU D 565 -78.897 84.989 -12.092 1.00172.54 ATOM 90 CB GLU D 565 -77.537 84.672 -9.217 1.00130.47 ATOM 91 N GLU D 566 -77.384 86.639 -11.822 1.00173.92 ATOM 92 CA GLU D 566 -78.054 87.561 -12.730 1.00159.63 ATOM 93 C GLU D 566 -77.980 87.080 -14.177 1.00167.95 ATOM 94 O GLU D 566 -78.986 87.094 -14.883 1.00175.43 ATOM 95 CB GLU D 566 -77.463 88.969 -12.610 1.00142.22 ATOM 96 N LEU D 567 -76.797 86.649 -14.612 1.00170.75 ATOM 97 CA LEU D 567 -76.582 86.263 -16.012 1.00172.52 ATOM 98 C LEU D 567 -77.346 85.001 -16.433 1.00182.97 ATOM 99 O LEU D 567 -77.437 84.699 -17.625 1.00164.69 ATOM 100 CB LEU D 567 -75.087 86.106 -16.317 1.00137.94 ATOM 101 N ARG D 568 -77.893 84.275 -15.457 1.00192.01 ATOM 102 CA ARG D 568 -78.676 83.061 -15.722 1.00180.19 ATOM 103 C ARG D 568 -80.107 83.388 -16.151 1.00185.66 ATOM 104 O ARG D 568 -80.746 82.611 -16.865 1.00162.90 ATOM 105 CB ARG D 568 -78.692 82.143 -14.496 1.00150.31 ATOM 106 N LYS D 569 -80.608 84.535 -15.702 1.00190.94 ATOM 107 CA LYS D 569 -81.889 85.042 -16.173 1.00168.71 ATOM 108 C LYS D 569 -81.801 85.352 -17.672 1.00165.91 ATOM 109 O LYS D 569 -81.966 84.459 -18.506 1.00140.03 ATOM 110 CB LYS D 569 -82.300 86.285 -15.379 1.00142.14 ATOM 111 N GLN D 570 -81.524 86.612 -18.007 1.00181.29 ATOM 112 CA GLN D 570 -81.428 87.037 -19.404 1.00178.71 ATOM 113 C GLN D 570 -80.434 86.185 -20.190 1.00167.39 ATOM 114 O GLN D 570 -80.582 85.994 -21.397 1.00150.39 ATOM 115 CB GLN D 570 -81.041 88.517 -19.490 1.00164.27 ATOM 116 N LEU D 577 -71.747 76.591 -17.813 1.00123.20 ATOM 117 CA LEU D 577 -70.934 77.779 -17.547 1.00143.48 ATOM 118 C LEU D 577 -69.435 77.464 -17.454 1.00158.47 ATOM 119 O LEU D 577 -69.035 76.354 -17.086 1.00137.18 ATOM 120 CB LEU D 577 -71.403 78.494 -16.271 1.00117.80 ATOM 121 N GLN D 578 -68.615 78.457 -17.793 1.00159.08 ATOM 122 CA GLN D 578 -67.161 78.333 -17.731 1.00148.51 ATOM 123 C GLN D 578 -66.597 79.167 -16.583 1.00153.11 ATOM 124 O GLN D 578 -66.642 80.393 -16.623 1.00148.81 ATOM 125 CB GLN D 578 -66.524 78.772 -19.057 1.00117.45 ATOM 126 N ARG D 579 -66.078 78.499 -15.557 1.00156.42 ATOM 127 CA ARG D 579 -65.429 79.189 -14.441 1.00144.64 ATOM 128 C ARG D 579 -63.929 79.284 -14.702 1.00133.58 ATOM 129 O ARG D 579 -63.325 78.364 -15.261 1.00118.13 ATOM 130 CB ARG D 579 -65.708 78.481 -13.104 1.00118.16 ATOM 131 N TYR D 580 -63.329 80.399 -14.305 1.00120.41 ATOM 132 CA TYR D 580 -61.928 80.629 -14.617 1.00113.33 ATOM 133 C TYR D 580 -60.999 80.309 -13.449 1.00130.22 ATOM 134 O TYR D 580 -61.107 80.893 -12.363 1.00110.93 ATOM 135 CB TYR D 580 -61.722 82.037 -15.189 1.00117.07 ATOM 136 CG TYR D 580 -62.210 82.137 -16.623 1.00150.80 ATOM 137 CD1 TYR D 580 -62.310 80.998 -17.414 1.00175.90 ATOM 138 CD2 TYR D 580 -62.576 83.355 -17.186 1.00155.39 ATOM 139 CE1 TYR D 580 -62.757 81.063 -18.726 1.00166.06 ATOM 140 CE2 TYR D 580 -63.024 83.431 -18.505 1.00143.02 ATOM 141 CZ TYR D 580 -63.111 82.277 -19.265 1.00153.53 ATOM 142 OH TYR D 580 -63.554 82.319 -20.567 1.00158.27 ATOM 143 N LYS D 581 -60.103 79.351 -13.698 1.00144.54 ATOM 144 CA LYS D 581 -59.162 78.835 -12.703 1.00124.51 ATOM 145 C LYS D 581 -57.868 79.658 -12.675 1.00124.81 ATOM 146 O LYS D 581 -56.934 79.350 -11.931 1.00134.46 ATOM 147 CB LYS D 581 -58.833 77.359 -12.987 1.00110.72 ATOM 148 CG LYS D 581 -60.041 76.436 -13.203 1.00111.69 ATOM 149 CD LYS D 581 -60.093 75.900 -14.637 1.00113.15 ATOM 150 N GLY D 582 -57.821 80.705 -13.493 1.00103.15 ATOM 151 CA GLY D 582 -56.664 81.582 -13.566 1.00120.85 ATOM 152 C GLY D 582 -56.618 82.380 -14.863 1.00124.71 ATOM 153 O GLY D 582 -57.281 82.021 -15.839 1.00 99.47 TER