HEADER ISOMERASE/DNA/ANTIBIOTIC 31-DEC-69 3RAE TITLE Quinolone(Levofloxacin)-DNA cleavage complex of type IV topoisomerase TITLE 2 from S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 EC: 5.99.1.-; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.90 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 166 REMARK 465 SER C 167 REMARK 465 LYS C 168 REMARK 465 GLY C 169 REMARK 465 LYS C 170 REMARK 465 GLY C 171 REMARK 465 LYS C 172 REMARK 465 LYS C 173 REMARK 465 GLU C 174 REMARK 465 GLU C 175 REMARK 465 VAL C 176 REMARK 465 ALA C 177 REMARK 465 GLN C 191 REMARK 465 PHE C 192 REMARK 465 GLY C 193 REMARK 465 LYS C 194 REMARK 465 GLY C 195 REMARK 465 ALA C 196 REMARK 465 THR C 197 DBREF 3RAE C 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 C 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 C 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 C 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 C 42 TYR LYS GLY ATOM 1 N PRO C 541 -34.435 43.307 -21.778 1.00115.42 ATOM 2 CA PRO C 541 -35.498 42.350 -22.103 1.00114.24 ATOM 3 C PRO C 541 -36.698 43.021 -22.766 1.00112.59 ATOM 4 O PRO C 541 -36.960 44.194 -22.500 1.00115.96 ATOM 5 CB PRO C 541 -35.893 41.795 -20.729 1.00114.92 ATOM 6 CG PRO C 541 -35.567 42.891 -19.776 1.00114.72 ATOM 7 CD PRO C 541 -34.336 43.561 -20.329 1.00113.36 ATOM 8 N LEU C 542 -37.412 42.284 -23.614 1.00105.75 ATOM 9 CA LEU C 542 -38.618 42.796 -24.261 1.00 99.23 ATOM 10 C LEU C 542 -39.883 42.446 -23.466 1.00110.17 ATOM 11 O LEU C 542 -40.866 43.191 -23.489 1.00108.08 ATOM 12 CB LEU C 542 -38.726 42.270 -25.697 1.00 85.78 ATOM 13 CG LEU C 542 -37.667 42.732 -26.703 1.00 77.59 ATOM 14 N TYR C 543 -39.846 41.323 -22.750 1.00122.07 ATOM 15 CA TYR C 543 -41.048 40.782 -22.112 1.00130.89 ATOM 16 C TYR C 543 -40.861 40.333 -20.650 1.00128.88 ATOM 17 O TYR C 543 -39.744 40.045 -20.215 1.00120.68 ATOM 18 CB TYR C 543 -41.595 39.609 -22.936 1.00134.42 ATOM 19 CG TYR C 543 -41.846 39.913 -24.399 1.00136.39 ATOM 20 CD1 TYR C 543 -42.958 40.645 -24.798 1.00139.74 ATOM 21 CD2 TYR C 543 -40.982 39.448 -25.382 1.00137.99 ATOM 22 CE1 TYR C 543 -43.196 40.918 -26.138 1.00144.19 ATOM 23 CE2 TYR C 543 -41.209 39.715 -26.725 1.00142.84 ATOM 24 CZ TYR C 543 -42.318 40.451 -27.100 1.00144.86 ATOM 25 OH TYR C 543 -42.553 40.715 -28.436 1.00143.15 ATOM 26 N LYS C 544 -41.963 40.266 -19.917 1.00135.17 ATOM 27 CA LYS C 544 -41.965 39.778 -18.549 1.00134.08 ATOM 28 C LYS C 544 -43.202 38.930 -18.286 1.00131.67 ATOM 29 O LYS C 544 -44.326 39.418 -18.373 1.00130.94 ATOM 30 CB LYS C 544 -41.933 40.942 -17.567 1.00130.63 ATOM 31 N TYR C 557 -38.420 36.369 -17.722 1.00100.03 ATOM 32 CA TYR C 557 -38.183 37.327 -18.804 1.00102.77 ATOM 33 C TYR C 557 -37.878 36.625 -20.117 1.00111.28 ATOM 34 O TYR C 557 -37.469 35.466 -20.120 1.00112.72 ATOM 35 CB TYR C 557 -37.012 38.241 -18.449 1.00 95.77 ATOM 36 CG TYR C 557 -37.226 39.012 -17.175 1.00103.10 ATOM 37 CD1 TYR C 557 -36.886 38.466 -15.940 1.00102.45 ATOM 38 CD2 TYR C 557 -37.782 40.286 -17.202 1.00107.84 ATOM 39 CE1 TYR C 557 -37.087 39.174 -14.767 1.00103.78 ATOM 40 CE2 TYR C 557 -37.989 41.001 -16.041 1.00108.35 ATOM 41 CZ TYR C 557 -37.641 40.443 -14.825 1.00108.38 ATOM 42 OH TYR C 557 -37.852 41.167 -13.673 1.00107.41 ATOM 43 N ALA C 558 -38.067 37.338 -21.228 1.00116.71 ATOM 44 CA ALA C 558 -37.753 36.822 -22.563 1.00119.88 ATOM 45 C ALA C 558 -37.337 37.950 -23.501 1.00121.28 ATOM 46 O ALA C 558 -37.767 39.089 -23.334 1.00119.83 ATOM 47 CB ALA C 558 -38.946 36.072 -23.147 1.00118.02 ATOM 48 N TRP C 559 -36.508 37.624 -24.490 1.00124.61 ATOM 49 CA TRP C 559 -36.026 38.610 -25.455 1.00128.83 ATOM 50 C TRP C 559 -36.606 38.371 -26.846 1.00142.89 ATOM 51 O TRP C 559 -36.838 39.315 -27.604 1.00142.77 ATOM 52 CB TRP C 559 -34.496 38.592 -25.525 1.00128.83 ATOM 53 CG TRP C 559 -33.823 39.120 -24.290 1.00132.84 ATOM 54 CD1 TRP C 559 -33.075 40.260 -24.185 1.00128.87 ATOM 55 CD2 TRP C 559 -33.842 38.531 -22.984 1.00136.25 ATOM 56 NE1 TRP C 559 -32.625 40.414 -22.896 1.00126.57 ATOM 57 CE2 TRP C 559 -33.083 39.369 -22.138 1.00131.39 ATOM 58 CE3 TRP C 559 -34.427 37.379 -22.449 1.00139.41 ATOM 59 CZ2 TRP C 559 -32.895 39.088 -20.784 1.00133.12 ATOM 60 CZ3 TRP C 559 -34.240 37.104 -21.107 1.00142.03 ATOM 61 CH2 TRP C 559 -33.479 37.955 -20.288 1.00139.17 ATOM 62 N THR C 560 -36.832 37.101 -27.175 1.00154.58 ATOM 63 CA THR C 560 -37.363 36.713 -28.480 1.00159.25 ATOM 64 C THR C 560 -38.876 36.499 -28.426 1.00165.78 ATOM 65 O THR C 560 -39.430 36.200 -27.368 1.00169.62 ATOM 66 CB THR C 560 -36.692 35.420 -28.991 1.00156.53 ATOM 67 N ASP C 561 -39.545 36.658 -29.564 1.00166.04 ATOM 68 CA ASP C 561 -40.970 36.361 -29.640 1.00162.66 ATOM 69 C ASP C 561 -41.175 34.864 -29.413 1.00160.23 ATOM 70 O ASP C 561 -42.276 34.416 -29.082 1.00157.20 ATOM 71 CB ASP C 561 -41.548 36.794 -30.989 1.00162.07 ATOM 72 N GLY C 562 -40.096 34.101 -29.582 1.00158.60 ATOM 73 CA GLY C 562 -40.114 32.668 -29.351 1.00155.93 ATOM 74 C GLY C 562 -39.980 32.289 -27.885 1.00152.80 ATOM 75 O GLY C 562 -40.541 31.282 -27.453 1.00149.01 ATOM 76 N GLU C 563 -39.243 33.096 -27.121 1.00153.94 ATOM 77 CA GLU C 563 -38.994 32.825 -25.699 1.00153.21 ATOM 78 C GLU C 563 -40.217 33.068 -24.808 1.00152.57 ATOM 79 O GLU C 563 -40.293 32.550 -23.691 1.00149.21 ATOM 80 CB GLU C 563 -37.798 33.641 -25.185 1.00147.58 ATOM 81 N LEU C 564 -41.169 33.855 -25.304 1.00152.55 ATOM 82 CA LEU C 564 -42.404 34.120 -24.571 1.00150.09 ATOM 83 C LEU C 564 -43.405 32.965 -24.706 1.00161.65 ATOM 84 O LEU C 564 -44.267 32.782 -23.847 1.00166.32 ATOM 85 CB LEU C 564 -43.035 35.442 -25.025 1.00140.21 ATOM 86 N GLU C 565 -43.287 32.186 -25.781 1.00165.46 ATOM 87 CA GLU C 565 -44.172 31.042 -25.998 1.00164.92 ATOM 88 C GLU C 565 -43.736 29.831 -25.168 1.00170.25 ATOM 89 O GLU C 565 -44.540 28.939 -24.888 1.00172.39 ATOM 90 CB GLU C 565 -44.243 30.682 -27.484 1.00158.35 ATOM 91 N GLU C 566 -42.460 29.811 -24.782 1.00170.15 ATOM 92 CA GLU C 566 -41.925 28.776 -23.895 1.00168.23 ATOM 93 C GLU C 566 -42.299 29.087 -22.453 1.00166.89 ATOM 94 O GLU C 566 -42.406 28.188 -21.614 1.00164.82 ATOM 95 CB GLU C 566 -40.403 28.679 -24.021 1.00163.16 ATOM 96 N LEU C 567 -42.488 30.373 -22.173 1.00166.79 ATOM 97 CA LEU C 567 -42.963 30.813 -20.869 1.00167.01 ATOM 98 C LEU C 567 -44.476 30.633 -20.785 1.00174.24 ATOM 99 O LEU C 567 -45.024 30.398 -19.706 1.00182.01 ATOM 100 CB LEU C 567 -42.583 32.275 -20.619 1.00157.82 ATOM 101 N ARG C 568 -45.142 30.732 -21.935 1.00169.95 ATOM 102 CA ARG C 568 -46.594 30.579 -22.013 1.00164.51 ATOM 103 C ARG C 568 -47.072 29.279 -21.359 1.00161.83 ATOM 104 O ARG C 568 -48.256 29.126 -21.055 1.00163.12 ATOM 105 CB ARG C 568 -47.064 30.654 -23.471 1.00161.49 ATOM 106 N LYS C 569 -46.146 28.348 -21.142 1.00153.55 ATOM 107 CA LYS C 569 -46.464 27.079 -20.496 1.00137.91 ATOM 108 C LYS C 569 -45.806 26.977 -19.118 1.00129.88 ATOM 109 O LYS C 569 -45.853 27.916 -18.320 1.00115.72 ATOM 110 CB LYS C 569 -46.035 25.904 -21.381 1.00122.51 ATOM 111 N LEU C 577 -48.439 38.885 -18.649 1.00101.93 ATOM 112 CA LEU C 577 -47.372 39.311 -19.561 1.00111.54 ATOM 113 C LEU C 577 -47.310 40.830 -19.751 1.00127.74 ATOM 114 O LEU C 577 -48.231 41.436 -20.307 1.00129.35 ATOM 115 CB LEU C 577 -47.512 38.631 -20.927 1.00 91.74 ATOM 116 N GLN C 578 -46.218 41.435 -19.289 1.00135.41 ATOM 117 CA GLN C 578 -45.971 42.860 -19.501 1.00139.89 ATOM 118 C GLN C 578 -44.937 43.061 -20.612 1.00146.94 ATOM 119 O GLN C 578 -43.900 42.395 -20.633 1.00148.88 ATOM 120 CB GLN C 578 -45.495 43.529 -18.207 1.00129.66 ATOM 121 N ARG C 579 -45.229 43.974 -21.536 1.00146.87 ATOM 122 CA ARG C 579 -44.318 44.284 -22.638 1.00135.61 ATOM 123 C ARG C 579 -43.533 45.574 -22.348 1.00124.32 ATOM 124 O ARG C 579 -44.116 46.656 -22.254 1.00119.92 ATOM 125 CB ARG C 579 -45.100 44.397 -23.953 1.00133.14 ATOM 126 N TYR C 580 -42.214 45.453 -22.202 1.00121.92 ATOM 127 CA TYR C 580 -41.376 46.591 -21.804 1.00123.20 ATOM 128 C TYR C 580 -41.256 47.672 -22.881 1.00119.15 ATOM 129 O TYR C 580 -40.810 47.404 -24.001 1.00114.55 ATOM 130 CB TYR C 580 -39.979 46.133 -21.354 1.00123.55 ATOM 131 CG TYR C 580 -39.900 45.646 -19.916 1.00129.04 ATOM 132 CD1 TYR C 580 -40.031 46.532 -18.848 1.00131.69 ATOM 133 CD2 TYR C 580 -39.672 44.302 -19.625 1.00128.64 ATOM 134 CE1 TYR C 580 -39.952 46.089 -17.533 1.00132.31 ATOM 135 CE2 TYR C 580 -39.590 43.850 -18.314 1.00126.71 ATOM 136 CZ TYR C 580 -39.731 44.745 -17.272 1.00128.66 ATOM 137 OH TYR C 580 -39.652 44.297 -15.968 1.00126.29 ATOM 138 N LYS C 581 -41.646 48.893 -22.516 1.00114.75 ATOM 139 CA LYS C 581 -41.638 50.027 -23.434 1.00105.19 ATOM 140 C LYS C 581 -40.381 50.885 -23.301 1.00102.06 ATOM 141 O LYS C 581 -40.088 51.701 -24.175 1.00 92.71 ATOM 142 CB LYS C 581 -42.880 50.894 -23.221 1.00 97.05 ATOM 143 CG LYS C 581 -44.190 50.216 -23.592 1.00 99.06 ATOM 144 CD LYS C 581 -45.390 51.058 -23.148 1.00 96.91 ATOM 145 N GLY C 582 -39.645 50.714 -22.207 1.00 72.98 ATOM 146 CA GLY C 582 -38.428 51.477 -21.999 1.00 79.26 ATOM 147 C GLY C 582 -37.723 51.008 -20.749 1.00 92.00 ATOM 148 O GLY C 582 -38.294 50.211 -20.000 1.00107.54 TER