HEADER ISOMERASE/DNA/ANTIBIOTIC 31-DEC-69 3RAF TITLE Quinazolinedione-DNA cleavage complex of type IV topoisomerase from TITLE 2 S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 EC: 5.99.1.-; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.24 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 166 REMARK 465 SER C 167 REMARK 465 LYS C 168 REMARK 465 GLY C 169 REMARK 465 LYS C 170 REMARK 465 GLY C 171 REMARK 465 LYS C 172 REMARK 465 LYS C 173 REMARK 465 GLU C 174 REMARK 465 GLU C 175 REMARK 465 VAL C 176 REMARK 465 GLN C 191 REMARK 465 PHE C 192 REMARK 465 GLY C 193 REMARK 465 LYS C 194 REMARK 465 GLY C 195 REMARK 465 ALA C 196 REMARK 465 THR C 197 DBREF 3RAF C 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 C 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 C 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 C 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 C 42 TYR LYS GLY ATOM 1 N PRO C 541 -103.889 8.790 13.858 1.00 53.87 ATOM 2 CA PRO C 541 -104.190 10.189 13.544 1.00 54.18 ATOM 3 C PRO C 541 -103.029 10.833 12.791 1.00 54.48 ATOM 4 O PRO C 541 -101.893 10.401 12.964 1.00 56.19 ATOM 5 CB PRO C 541 -104.369 10.825 14.929 1.00 53.40 ATOM 6 CG PRO C 541 -103.585 9.949 15.847 1.00 54.01 ATOM 7 CD PRO C 541 -103.749 8.563 15.306 1.00 54.30 ATOM 8 N LEU C 542 -103.314 11.835 11.962 1.00 52.15 ATOM 9 CA LEU C 542 -102.272 12.549 11.225 1.00 49.16 ATOM 10 C LEU C 542 -101.865 13.852 11.935 1.00 51.19 ATOM 11 O LEU C 542 -100.771 14.374 11.700 1.00 51.73 ATOM 12 CB LEU C 542 -102.715 12.841 9.773 1.00 40.44 ATOM 13 CG LEU C 542 -102.800 11.719 8.727 1.00 29.94 ATOM 14 N TYR C 543 -102.735 14.358 12.812 1.00 51.93 ATOM 15 CA TYR C 543 -102.561 15.697 13.387 1.00 55.98 ATOM 16 C TYR C 543 -102.971 15.849 14.868 1.00 54.06 ATOM 17 O TYR C 543 -103.949 15.240 15.317 1.00 50.25 ATOM 18 CB TYR C 543 -103.346 16.730 12.560 1.00 59.27 ATOM 19 CG TYR C 543 -102.990 16.801 11.087 1.00 63.02 ATOM 20 CD1 TYR C 543 -101.891 17.527 10.651 1.00 64.14 ATOM 21 CD2 TYR C 543 -103.772 16.161 10.129 1.00 66.03 ATOM 22 CE1 TYR C 543 -101.567 17.602 9.304 1.00 65.92 ATOM 23 CE2 TYR C 543 -103.459 16.231 8.779 1.00 66.66 ATOM 24 CZ TYR C 543 -102.354 16.954 8.370 1.00 66.15 ATOM 25 OH TYR C 543 -102.031 17.032 7.028 1.00 63.06 ATOM 26 N LYS C 544 -102.228 16.694 15.598 1.00 53.68 ATOM 27 CA LYS C 544 -102.590 17.123 16.957 1.00 52.27 ATOM 28 C LYS C 544 -102.656 18.654 17.091 1.00 48.70 ATOM 29 O LYS C 544 -103.504 19.205 17.817 1.00 44.65 ATOM 30 CB LYS C 544 -101.612 16.554 17.990 1.00 52.22 ATOM 31 N ALA C 556 -106.040 17.973 20.652 1.00 71.93 ATOM 32 CA ALA C 556 -107.005 17.199 19.860 1.00 75.16 ATOM 33 C ALA C 556 -106.397 16.511 18.619 1.00 78.02 ATOM 34 O ALA C 556 -105.237 16.755 18.268 1.00 80.70 ATOM 35 CB ALA C 556 -108.199 18.071 19.466 1.00 72.96 ATOM 36 N TYR C 557 -107.190 15.656 17.963 1.00 72.33 ATOM 37 CA TYR C 557 -106.692 14.816 16.867 1.00 65.12 ATOM 38 C TYR C 557 -107.486 14.968 15.578 1.00 63.73 ATOM 39 O TYR C 557 -108.706 15.131 15.605 1.00 63.47 ATOM 40 CB TYR C 557 -106.677 13.335 17.271 1.00 62.26 ATOM 41 CG TYR C 557 -105.883 13.048 18.525 1.00 64.45 ATOM 42 CD1 TYR C 557 -106.524 12.793 19.730 1.00 63.97 ATOM 43 CD2 TYR C 557 -104.492 13.046 18.509 1.00 64.80 ATOM 44 CE1 TYR C 557 -105.806 12.536 20.885 1.00 62.36 ATOM 45 CE2 TYR C 557 -103.762 12.789 19.657 1.00 64.70 ATOM 46 CZ TYR C 557 -104.424 12.534 20.846 1.00 63.39 ATOM 47 OH TYR C 557 -103.706 12.279 21.999 1.00 63.15 ATOM 48 N ALA C 558 -106.779 14.898 14.450 1.00 61.57 ATOM 49 CA ALA C 558 -107.405 14.940 13.130 1.00 57.28 ATOM 50 C ALA C 558 -106.841 13.861 12.214 1.00 58.70 ATOM 51 O ALA C 558 -105.640 13.610 12.218 1.00 60.26 ATOM 52 CB ALA C 558 -107.211 16.306 12.497 1.00 53.58 ATOM 53 N TRP C 559 -107.705 13.234 11.421 1.00 58.14 ATOM 54 CA TRP C 559 -107.263 12.262 10.420 1.00 60.83 ATOM 55 C TRP C 559 -107.267 12.845 9.003 1.00 64.37 ATOM 56 O TRP C 559 -106.516 12.395 8.135 1.00 58.80 ATOM 57 CB TRP C 559 -108.151 11.017 10.456 1.00 61.08 ATOM 58 CG TRP C 559 -107.893 10.126 11.611 1.00 60.83 ATOM 59 CD1 TRP C 559 -107.368 8.870 11.572 1.00 61.31 ATOM 60 CD2 TRP C 559 -108.133 10.420 12.987 1.00 63.03 ATOM 61 NE1 TRP C 559 -107.270 8.356 12.842 1.00 62.74 ATOM 62 CE2 TRP C 559 -107.730 9.289 13.732 1.00 64.08 ATOM 63 CE3 TRP C 559 -108.648 11.530 13.664 1.00 63.62 ATOM 64 CZ2 TRP C 559 -107.828 9.232 15.119 1.00 64.78 ATOM 65 CZ3 TRP C 559 -108.744 11.474 15.045 1.00 66.21 ATOM 66 CH2 TRP C 559 -108.336 10.331 15.758 1.00 67.22 ATOM 67 N THR C 560 -108.126 13.841 8.786 1.00 73.03 ATOM 68 CA THR C 560 -108.351 14.451 7.474 1.00 75.62 ATOM 69 C THR C 560 -107.785 15.870 7.413 1.00 75.77 ATOM 70 O THR C 560 -107.889 16.628 8.380 1.00 76.31 ATOM 71 CB THR C 560 -109.870 14.508 7.140 1.00 29.16 ATOM 72 N ASP C 561 -107.186 16.234 6.281 1.00 74.41 ATOM 73 CA ASP C 561 -106.782 17.621 6.079 1.00 75.39 ATOM 74 C ASP C 561 -108.032 18.490 6.244 1.00 77.78 ATOM 75 O ASP C 561 -107.946 19.706 6.448 1.00 77.35 ATOM 76 CB ASP C 561 -106.132 17.819 4.706 1.00 71.19 ATOM 77 N GLY C 562 -109.191 17.831 6.177 1.00 77.16 ATOM 78 CA GLY C 562 -110.481 18.466 6.380 1.00 76.96 ATOM 79 C GLY C 562 -110.835 18.722 7.837 1.00 77.28 ATOM 80 O GLY C 562 -111.193 19.846 8.193 1.00 74.95 ATOM 81 N GLU C 563 -110.745 17.684 8.675 1.00 79.03 ATOM 82 CA GLU C 563 -111.006 17.810 10.121 1.00 76.78 ATOM 83 C GLU C 563 -110.083 18.830 10.768 1.00 71.54 ATOM 84 O GLU C 563 -110.482 19.565 11.674 1.00 67.77 ATOM 85 CB GLU C 563 -110.803 16.476 10.835 1.00 75.89 ATOM 86 CG GLU C 563 -111.795 15.404 10.488 1.00 78.11 ATOM 87 CD GLU C 563 -111.451 14.091 11.155 1.00 81.03 ATOM 88 OE1 GLU C 563 -110.796 14.128 12.218 1.00 83.21 ATOM 89 OE2 GLU C 563 -111.819 13.024 10.618 1.00 81.15 ATOM 90 N LEU C 564 -108.838 18.839 10.301 1.00 68.93 ATOM 91 CA LEU C 564 -107.830 19.788 10.741 1.00 66.96 ATOM 92 C LEU C 564 -108.337 21.232 10.648 1.00 71.82 ATOM 93 O LEU C 564 -108.005 22.069 11.487 1.00 71.83 ATOM 94 CB LEU C 564 -106.565 19.620 9.901 1.00 59.31 ATOM 95 CG LEU C 564 -105.254 19.962 10.607 1.00 50.81 ATOM 96 CD1 LEU C 564 -104.164 20.257 9.589 1.00 48.17 ATOM 97 CD2 LEU C 564 -105.446 21.143 11.559 1.00 45.35 ATOM 98 N GLU C 565 -109.136 21.521 9.622 1.00 75.22 ATOM 99 CA GLU C 565 -109.756 22.837 9.488 1.00 77.82 ATOM 100 C GLU C 565 -110.805 23.064 10.589 1.00 78.86 ATOM 101 O GLU C 565 -110.798 24.106 11.253 1.00 78.89 ATOM 102 CB GLU C 565 -110.370 23.011 8.095 1.00 77.23 ATOM 103 N GLU C 566 -111.696 22.088 10.780 1.00 76.97 ATOM 104 CA GLU C 566 -112.690 22.147 11.853 1.00 73.94 ATOM 105 C GLU C 566 -112.002 22.362 13.195 1.00 75.39 ATOM 106 O GLU C 566 -112.444 23.170 14.018 1.00 74.68 ATOM 107 CB GLU C 566 -113.522 20.863 11.905 1.00 68.35 ATOM 108 N LEU C 567 -110.910 21.634 13.406 1.00 75.62 ATOM 109 CA LEU C 567 -110.179 21.716 14.663 1.00 75.47 ATOM 110 C LEU C 567 -109.562 23.102 14.875 1.00 82.13 ATOM 111 O LEU C 567 -109.603 23.631 15.988 1.00 86.15 ATOM 112 CB LEU C 567 -109.121 20.603 14.775 1.00 68.17 ATOM 113 N ARG C 568 -109.012 23.697 13.815 1.00 81.83 ATOM 114 CA ARG C 568 -108.370 25.015 13.925 1.00 77.78 ATOM 115 C ARG C 568 -109.361 26.119 14.325 1.00 81.27 ATOM 116 O ARG C 568 -108.958 27.235 14.659 1.00 81.07 ATOM 117 CB ARG C 568 -107.624 25.384 12.637 1.00 71.15 ATOM 118 N LYS C 569 -110.654 25.797 14.293 1.00 81.32 ATOM 119 CA LYS C 569 -111.694 26.700 14.786 1.00 74.34 ATOM 120 C LYS C 569 -112.335 26.157 16.079 1.00 69.98 ATOM 121 O LYS C 569 -111.651 25.856 17.068 1.00 63.76 ATOM 122 CB LYS C 569 -112.758 26.947 13.699 1.00 68.36 ATOM 123 N LEU C 577 -100.330 22.595 16.607 1.00 64.14 ATOM 124 CA LEU C 577 -100.571 21.388 15.801 1.00 65.78 ATOM 125 C LEU C 577 -99.279 20.631 15.490 1.00 69.61 ATOM 126 O LEU C 577 -98.426 21.122 14.745 1.00 68.86 ATOM 127 CB LEU C 577 -101.302 21.715 14.485 1.00 58.00 ATOM 128 N GLN C 578 -99.139 19.438 16.067 1.00 69.06 ATOM 129 CA GLN C 578 -98.029 18.553 15.718 1.00 66.58 ATOM 130 C GLN C 578 -98.440 17.612 14.588 1.00 67.09 ATOM 131 O GLN C 578 -99.385 16.833 14.726 1.00 69.36 ATOM 132 CB GLN C 578 -97.559 17.739 16.931 1.00 63.05 ATOM 133 N ARG C 579 -97.742 17.701 13.462 1.00 62.71 ATOM 134 CA ARG C 579 -97.954 16.762 12.373 1.00 56.76 ATOM 135 C ARG C 579 -97.161 15.497 12.705 1.00 56.24 ATOM 136 O ARG C 579 -95.933 15.499 12.661 1.00 56.98 ATOM 137 CB ARG C 579 -97.521 17.372 11.027 1.00 53.89 ATOM 138 N TYR C 580 -97.868 14.431 13.075 1.00 53.68 ATOM 139 CA TYR C 580 -97.234 13.159 13.414 1.00 52.78 ATOM 140 C TYR C 580 -96.405 12.585 12.259 1.00 52.13 ATOM 141 O TYR C 580 -96.870 12.520 11.116 1.00 50.53 ATOM 142 CB TYR C 580 -98.292 12.134 13.822 1.00 54.94 ATOM 143 CG TYR C 580 -98.857 12.287 15.218 1.00 59.70 ATOM 144 CD1 TYR C 580 -98.147 11.845 16.327 1.00 63.77 ATOM 145 CD2 TYR C 580 -100.119 12.825 15.423 1.00 60.41 ATOM 146 CE1 TYR C 580 -98.669 11.959 17.605 1.00 64.95 ATOM 147 CE2 TYR C 580 -100.653 12.942 16.696 1.00 62.26 ATOM 148 CZ TYR C 580 -99.923 12.508 17.784 1.00 64.92 ATOM 149 OH TYR C 580 -100.445 12.624 19.055 1.00 66.02 ATOM 150 N LYS C 581 -95.185 12.144 12.559 1.00 51.97 ATOM 151 CA LYS C 581 -94.308 11.571 11.528 1.00 48.83 ATOM 152 C LYS C 581 -94.223 10.047 11.604 1.00 52.98 ATOM 153 O LYS C 581 -93.468 9.418 10.865 1.00 48.71 ATOM 154 CB LYS C 581 -92.897 12.174 11.600 1.00 42.63 ATOM 155 CG LYS C 581 -92.811 13.646 11.208 1.00 39.92 ATOM 156 CD LYS C 581 -91.387 14.179 11.315 1.00 37.75 ATOM 157 N GLY C 582 -94.993 9.453 12.505 1.00 42.77 ATOM 158 CA GLY C 582 -94.979 8.013 12.658 1.00 44.62 ATOM 159 C GLY C 582 -95.505 7.646 14.020 1.00 43.77 ATOM 160 O GLY C 582 -95.676 8.538 14.850 1.00 44.30 TER