HEADER ISOMERASE/DNA/ANTIBIOTIC 31-DEC-69 3RAF TITLE Quinazolinedione-DNA cleavage complex of type IV topoisomerase from TITLE 2 S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 EC: 5.99.1.-; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.24 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 167 REMARK 465 LYS D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 LYS D 172 REMARK 465 LYS D 173 REMARK 465 GLU D 174 REMARK 465 GLU D 175 REMARK 465 VAL D 176 REMARK 465 PHE D 192 REMARK 465 GLY D 193 REMARK 465 LYS D 194 REMARK 465 GLY D 195 REMARK 465 ALA D 196 REMARK 465 THR D 197 DBREF 3RAF D 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 D 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 D 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 D 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 D 42 TYR LYS GLY ATOM 1 N PRO D 541 -50.494 10.421 20.181 1.00 42.98 ATOM 2 CA PRO D 541 -50.275 11.845 20.437 1.00 44.25 ATOM 3 C PRO D 541 -51.517 12.476 21.037 1.00 45.20 ATOM 4 O PRO D 541 -52.638 12.024 20.754 1.00 45.17 ATOM 5 CB PRO D 541 -50.036 12.414 19.041 1.00 44.11 ATOM 6 CG PRO D 541 -50.818 11.524 18.156 1.00 44.08 ATOM 7 CD PRO D 541 -50.675 10.139 18.751 1.00 43.75 ATOM 8 N LEU D 542 -51.318 13.511 21.848 1.00 44.72 ATOM 9 CA LEU D 542 -52.436 14.223 22.447 1.00 50.11 ATOM 10 C LEU D 542 -52.901 15.390 21.549 1.00 52.31 ATOM 11 O LEU D 542 -54.093 15.711 21.509 1.00 51.88 ATOM 12 CB LEU D 542 -52.084 14.704 23.875 1.00 51.12 ATOM 13 CG LEU D 542 -51.896 13.695 25.021 1.00 23.49 ATOM 14 N TYR D 543 -51.968 15.999 20.812 1.00 51.14 ATOM 15 CA TYR D 543 -52.242 17.253 20.105 1.00 49.49 ATOM 16 C TYR D 543 -51.799 17.227 18.655 1.00 49.68 ATOM 17 O TYR D 543 -50.803 16.594 18.335 1.00 52.52 ATOM 18 CB TYR D 543 -51.514 18.412 20.787 1.00 54.54 ATOM 19 CG TYR D 543 -51.776 18.540 22.271 1.00 66.88 ATOM 20 CD1 TYR D 543 -53.038 18.880 22.749 1.00 71.69 ATOM 21 CD2 TYR D 543 -50.761 18.339 23.196 1.00 72.76 ATOM 22 CE1 TYR D 543 -53.286 19.005 24.108 1.00 74.60 ATOM 23 CE2 TYR D 543 -50.999 18.461 24.560 1.00 75.88 ATOM 24 CZ TYR D 543 -52.264 18.793 25.010 1.00 76.53 ATOM 25 OH TYR D 543 -52.509 18.915 26.364 1.00 77.40 ATOM 26 N LYS D 544 -52.539 17.929 17.792 1.00 50.77 ATOM 27 CA LYS D 544 -52.129 18.202 16.406 1.00 53.99 ATOM 28 C LYS D 544 -52.265 19.697 16.061 1.00 54.20 ATOM 29 O LYS D 544 -53.374 20.237 16.051 1.00 54.49 ATOM 30 CB LYS D 544 -52.949 17.365 15.410 1.00 54.43 ATOM 31 N MET D 545 -51.141 20.360 15.781 1.00 50.69 ATOM 32 CA MET D 545 -51.149 21.767 15.347 1.00 46.27 ATOM 33 C MET D 545 -50.747 21.882 13.866 1.00 44.02 ATOM 34 O MET D 545 -51.483 21.471 12.964 1.00 40.72 ATOM 35 CB MET D 545 -50.218 22.636 16.226 1.00 41.04 ATOM 36 CG MET D 545 -50.893 23.786 16.997 1.00 33.06 ATOM 37 N ALA D 556 -48.408 19.089 12.346 1.00 60.63 ATOM 38 CA ALA D 556 -47.615 18.167 13.169 1.00 61.09 ATOM 39 C ALA D 556 -48.242 17.816 14.537 1.00 60.72 ATOM 40 O ALA D 556 -49.310 18.321 14.897 1.00 58.86 ATOM 41 CB ALA D 556 -46.177 18.681 13.337 1.00 58.71 ATOM 42 N TYR D 557 -47.564 16.947 15.287 1.00 59.98 ATOM 43 CA TYR D 557 -48.115 16.388 16.522 1.00 57.44 ATOM 44 C TYR D 557 -47.264 16.667 17.764 1.00 58.61 ATOM 45 O TYR D 557 -46.065 16.930 17.670 1.00 61.11 ATOM 46 CB TYR D 557 -48.308 14.880 16.369 1.00 57.53 ATOM 47 CG TYR D 557 -49.044 14.477 15.106 1.00 60.66 ATOM 48 CD1 TYR D 557 -48.352 14.013 13.993 1.00 62.71 ATOM 49 CD2 TYR D 557 -50.431 14.557 15.029 1.00 61.90 ATOM 50 CE1 TYR D 557 -49.020 13.643 12.844 1.00 65.51 ATOM 51 CE2 TYR D 557 -51.111 14.188 13.885 1.00 63.43 ATOM 52 CZ TYR D 557 -50.403 13.731 12.792 1.00 67.30 ATOM 53 OH TYR D 557 -51.078 13.359 11.642 1.00 69.97 ATOM 54 N ALA D 558 -47.902 16.597 18.930 1.00 58.44 ATOM 55 CA ALA D 558 -47.228 16.791 20.215 1.00 56.19 ATOM 56 C ALA D 558 -47.793 15.849 21.284 1.00 55.50 ATOM 57 O ALA D 558 -48.998 15.551 21.292 1.00 53.03 ATOM 58 CB ALA D 558 -47.349 18.233 20.663 1.00 54.92 ATOM 59 N TRP D 559 -46.917 15.381 22.177 1.00 55.67 ATOM 60 CA TRP D 559 -47.306 14.449 23.243 1.00 53.85 ATOM 61 C TRP D 559 -47.305 15.074 24.627 1.00 58.43 ATOM 62 O TRP D 559 -47.989 14.595 25.523 1.00 61.70 ATOM 63 CB TRP D 559 -46.396 13.224 23.266 1.00 48.31 ATOM 64 CG TRP D 559 -46.676 12.270 22.178 1.00 49.34 ATOM 65 CD1 TRP D 559 -47.312 11.071 22.285 1.00 50.66 ATOM 66 CD2 TRP D 559 -46.345 12.430 20.795 1.00 51.75 ATOM 67 NE1 TRP D 559 -47.394 10.468 21.055 1.00 52.56 ATOM 68 CE2 TRP D 559 -46.807 11.283 20.122 1.00 53.12 ATOM 69 CE3 TRP D 559 -45.698 13.430 20.062 1.00 52.80 ATOM 70 CZ2 TRP D 559 -46.644 11.107 18.754 1.00 54.67 ATOM 71 CZ3 TRP D 559 -45.535 13.255 18.709 1.00 54.27 ATOM 72 CH2 TRP D 559 -46.008 12.102 18.065 1.00 55.99 ATOM 73 N THR D 560 -46.523 16.135 24.795 1.00 57.27 ATOM 74 CA THR D 560 -46.351 16.775 26.092 1.00 54.06 ATOM 75 C THR D 560 -46.753 18.236 25.978 1.00 59.73 ATOM 76 O THR D 560 -46.364 18.907 25.017 1.00 59.23 ATOM 77 CB THR D 560 -44.881 16.686 26.560 1.00 47.96 ATOM 78 N ASP D 561 -47.542 18.724 26.937 1.00 62.31 ATOM 79 CA ASP D 561 -47.919 20.138 26.954 1.00 61.71 ATOM 80 C ASP D 561 -46.693 21.008 26.593 1.00 61.70 ATOM 81 O ASP D 561 -46.799 22.039 25.915 1.00 54.89 ATOM 82 CB ASP D 561 -48.511 20.523 28.314 1.00 57.14 ATOM 83 N GLY D 562 -45.520 20.560 27.029 1.00 63.25 ATOM 84 CA GLY D 562 -44.278 21.218 26.675 1.00 61.14 ATOM 85 C GLY D 562 -43.986 21.145 25.191 1.00 59.19 ATOM 86 O GLY D 562 -43.631 22.156 24.585 1.00 58.01 ATOM 87 N GLU D 563 -44.126 19.951 24.610 1.00 59.97 ATOM 88 CA GLU D 563 -43.898 19.749 23.175 1.00 61.07 ATOM 89 C GLU D 563 -44.862 20.618 22.371 1.00 67.63 ATOM 90 O GLU D 563 -44.541 21.079 21.270 1.00 66.39 ATOM 91 CB GLU D 563 -44.024 18.261 22.782 1.00 53.60 ATOM 92 N LEU D 564 -46.041 20.851 22.944 1.00 71.40 ATOM 93 CA LEU D 564 -47.045 21.719 22.338 1.00 70.01 ATOM 94 C LEU D 564 -46.540 23.166 22.189 1.00 74.31 ATOM 95 O LEU D 564 -46.617 23.743 21.107 1.00 73.57 ATOM 96 CB LEU D 564 -48.336 21.682 23.158 1.00 63.68 ATOM 97 CG LEU D 564 -49.607 22.077 22.408 1.00 58.74 ATOM 98 CD1 LEU D 564 -50.457 23.002 23.247 1.00 57.12 ATOM 99 CD2 LEU D 564 -49.264 22.743 21.096 1.00 59.01 ATOM 100 N GLU D 565 -46.016 23.742 23.272 1.00 78.22 ATOM 101 CA GLU D 565 -45.515 25.122 23.250 1.00 76.27 ATOM 102 C GLU D 565 -44.417 25.332 22.203 1.00 77.17 ATOM 103 O GLU D 565 -44.302 26.412 21.626 1.00 76.81 ATOM 104 CB GLU D 565 -45.033 25.559 24.639 1.00 73.22 ATOM 105 N GLU D 566 -43.620 24.297 21.954 1.00 80.59 ATOM 106 CA GLU D 566 -42.588 24.363 20.916 1.00 87.29 ATOM 107 C GLU D 566 -43.191 24.419 19.501 1.00 92.32 ATOM 108 O GLU D 566 -42.755 25.218 18.664 1.00 94.09 ATOM 109 CB GLU D 566 -41.604 23.192 21.043 1.00 85.78 ATOM 110 N LEU D 567 -44.188 23.570 19.238 1.00 91.74 ATOM 111 CA LEU D 567 -44.891 23.591 17.952 1.00 86.88 ATOM 112 C LEU D 567 -45.657 24.913 17.782 1.00 88.96 ATOM 113 O LEU D 567 -45.669 25.498 16.697 1.00 87.86 ATOM 114 CB LEU D 567 -45.819 22.368 17.783 1.00 78.04 ATOM 115 N ARG D 568 -46.276 25.393 18.860 1.00 90.99 ATOM 116 CA ARG D 568 -47.005 26.660 18.814 1.00 89.47 ATOM 117 C ARG D 568 -46.088 27.783 18.328 1.00 94.07 ATOM 118 O ARG D 568 -46.552 28.754 17.730 1.00 94.70 ATOM 119 CB ARG D 568 -47.631 27.001 20.174 1.00 81.77 ATOM 120 N LYS D 569 -44.785 27.634 18.571 1.00 95.09 ATOM 121 CA LYS D 569 -43.796 28.602 18.099 1.00 92.32 ATOM 122 C LYS D 569 -43.883 28.797 16.579 1.00 89.20 ATOM 123 O LYS D 569 -44.149 29.903 16.117 1.00 88.08 ATOM 124 CB LYS D 569 -42.378 28.206 18.532 1.00 90.48 ATOM 125 N GLN D 570 -43.680 27.730 15.806 1.00 86.40 ATOM 126 CA GLN D 570 -43.794 27.809 14.341 1.00 86.30 ATOM 127 C GLN D 570 -45.234 27.596 13.808 1.00 58.02 ATOM 128 O GLN D 570 -45.956 28.545 13.452 1.00 52.67 ATOM 129 CB GLN D 570 -42.824 26.820 13.675 1.00 83.63 ATOM 130 N LEU D 577 -55.133 24.095 16.807 1.00 47.08 ATOM 131 CA LEU D 577 -54.925 22.942 17.699 1.00 52.84 ATOM 132 C LEU D 577 -56.132 22.016 17.755 1.00 60.44 ATOM 133 O LEU D 577 -57.211 22.421 18.185 1.00 59.35 ATOM 134 CB LEU D 577 -54.553 23.358 19.142 1.00 41.19 ATOM 135 N GLN D 578 -55.938 20.773 17.318 1.00 62.79 ATOM 136 CA GLN D 578 -56.884 19.700 17.608 1.00 61.99 ATOM 137 C GLN D 578 -56.418 18.971 18.864 1.00 54.91 ATOM 138 O GLN D 578 -55.282 18.510 18.941 1.00 54.92 ATOM 139 CB GLN D 578 -56.999 18.712 16.437 1.00 64.39 ATOM 140 N ARG D 579 -57.292 18.892 19.859 1.00 49.60 ATOM 141 CA ARG D 579 -56.998 18.127 21.059 1.00 49.06 ATOM 142 C ARG D 579 -57.643 16.734 20.937 1.00 56.71 ATOM 143 O ARG D 579 -58.840 16.578 21.192 1.00 64.63 ATOM 144 CB ARG D 579 -57.483 18.889 22.312 1.00 41.11 ATOM 145 N TYR D 580 -56.864 15.729 20.527 1.00 50.24 ATOM 146 CA TYR D 580 -57.396 14.365 20.379 1.00 47.64 ATOM 147 C TYR D 580 -58.161 13.859 21.615 1.00 45.33 ATOM 148 O TYR D 580 -57.660 13.930 22.743 1.00 41.97 ATOM 149 CB TYR D 580 -56.288 13.377 19.991 1.00 52.13 ATOM 150 CG TYR D 580 -55.856 13.494 18.550 1.00 64.00 ATOM 151 CD1 TYR D 580 -56.773 13.805 17.557 1.00 67.82 ATOM 152 CD2 TYR D 580 -54.529 13.308 18.176 1.00 69.85 ATOM 153 CE1 TYR D 580 -56.387 13.919 16.233 1.00 69.01 ATOM 154 CE2 TYR D 580 -54.133 13.420 16.848 1.00 69.08 ATOM 155 CZ TYR D 580 -55.070 13.723 15.885 1.00 69.24 ATOM 156 OH TYR D 580 -54.698 13.840 14.565 1.00 71.45 ATOM 157 N LYS D 581 -59.372 13.345 21.398 1.00 44.42 ATOM 158 CA LYS D 581 -60.175 12.782 22.487 1.00 44.63 ATOM 159 C LYS D 581 -60.160 11.249 22.448 1.00 53.80 ATOM 160 O LYS D 581 -60.680 10.585 23.347 1.00 56.26 ATOM 161 CB LYS D 581 -61.627 13.294 22.440 1.00 43.40 ATOM 162 CG LYS D 581 -61.797 14.815 22.278 1.00 40.42 ATOM 163 CD LYS D 581 -63.264 15.224 22.037 1.00 35.81 ATOM 164 N GLY D 582 -59.583 10.685 21.394 1.00 42.63 ATOM 165 CA GLY D 582 -59.440 9.243 21.308 1.00 50.05 ATOM 166 C GLY D 582 -58.788 8.831 20.007 1.00 52.98 ATOM 167 O GLY D 582 -58.488 9.690 19.188 1.00 57.15 TER