HEADER OXIDOREDUCTASE 17-MAY-11 3S39 TITLE Structure of Thermus thermophilus cytochrome ba3 oxidase 60s after Xe TITLE 2 depressurization COMPND MOL_ID: 2; COMPND 2 MOLECULE: Cytochrome c oxidase subunit 2; COMPND 3 CHAIN: B; COMPND 4 EC: 1.9.3.1; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 4.80 ANGSTORMS DBREF 3S39 B 3 168 UNP Q5SJ80 COX2_THET8 3 168 SEQRES 1 B 34 ASP GLU HIS LYS ALA HIS LYS ALA ILE LEU ALA TYR GLU SEQRES 2 B 34 LYS GLY TRP LEU ALA PHE SER LEU ALA MET LEU PHE VAL SEQRES 3 B 34 PHE ILE ALA LEU ILE ALA TYR THR ATOM 1 N ASP B 3 8.514 6.851 14.040 1.00200.17 ATOM 2 CA ASP B 3 7.902 5.698 13.317 1.00200.17 ATOM 3 C ASP B 3 8.313 5.708 11.842 1.00200.17 ATOM 4 O ASP B 3 8.154 6.719 11.144 1.00200.17 ATOM 5 CB ASP B 3 6.373 5.714 13.463 1.00200.17 ATOM 6 CG ASP B 3 5.744 4.360 13.197 1.00200.17 ATOM 7 OD1 ASP B 3 6.061 3.397 13.941 1.00200.17 ATOM 8 OD2 ASP B 3 4.916 4.267 12.260 1.00200.17 ATOM 9 N GLU B 4 8.855 4.574 11.393 1.00200.17 ATOM 10 CA GLU B 4 9.367 4.390 10.024 1.00200.17 ATOM 11 C GLU B 4 10.757 5.016 9.792 1.00200.17 ATOM 12 O GLU B 4 11.661 4.365 9.248 1.00200.17 ATOM 13 CB GLU B 4 8.344 4.865 8.977 1.00200.17 ATOM 14 CG GLU B 4 8.738 4.588 7.531 1.00200.17 ATOM 15 CD GLU B 4 7.581 4.773 6.564 1.00200.17 ATOM 16 OE1 GLU B 4 6.486 4.219 6.826 1.00200.17 ATOM 17 OE2 GLU B 4 7.760 5.473 5.542 1.00200.17 ATOM 18 N HIS B 5 10.912 6.279 10.192 1.00200.17 ATOM 19 CA HIS B 5 12.198 6.962 10.110 1.00200.17 ATOM 20 C HIS B 5 12.978 6.808 11.408 1.00200.17 ATOM 21 O HIS B 5 14.188 7.044 11.455 1.00200.17 ATOM 22 CB HIS B 5 12.002 8.439 9.819 1.00200.17 ATOM 23 CG HIS B 5 13.177 9.073 9.151 1.00200.17 ATOM 24 ND1 HIS B 5 13.163 10.375 8.704 1.00200.17 ATOM 25 CD2 HIS B 5 14.394 8.576 8.825 1.00200.17 ATOM 26 CE1 HIS B 5 14.327 10.662 8.150 1.00200.17 ATOM 27 NE2 HIS B 5 15.091 9.586 8.209 1.00200.17 ATOM 28 N LYS B 6 12.261 6.436 12.463 1.00200.17 ATOM 29 CA LYS B 6 12.863 6.068 13.735 1.00200.17 ATOM 30 C LYS B 6 13.366 4.623 13.693 1.00200.17 ATOM 31 O LYS B 6 14.429 4.314 14.243 1.00200.17 ATOM 32 CB LYS B 6 11.853 6.234 14.867 1.00200.17 ATOM 33 CG LYS B 6 12.425 5.937 16.241 1.00200.17 ATOM 34 CD LYS B 6 11.345 5.938 17.303 1.00200.17 ATOM 35 CE LYS B 6 11.933 5.698 18.693 1.00200.17 ATOM 36 NZ LYS B 6 10.876 5.504 19.740 1.00200.17 ATOM 37 N ALA B 7 12.581 3.753 13.051 1.00200.17 ATOM 38 CA ALA B 7 12.948 2.352 12.819 1.00200.17 ATOM 39 C ALA B 7 14.135 2.200 11.846 1.00200.17 ATOM 40 O ALA B 7 14.894 1.225 11.934 1.00200.17 ATOM 41 CB ALA B 7 11.730 1.554 12.327 1.00200.17 ATOM 42 N HIS B 8 14.290 3.165 10.933 1.00200.17 ATOM 43 CA HIS B 8 15.412 3.193 9.984 1.00200.17 ATOM 44 C HIS B 8 16.762 3.308 10.693 1.00200.17 ATOM 45 O HIS B 8 17.688 2.549 10.396 1.00200.17 ATOM 46 CB HIS B 8 15.255 4.340 8.974 1.00200.17 ATOM 47 CG HIS B 8 16.349 4.397 7.950 1.00200.17 ATOM 48 ND1 HIS B 8 16.392 3.551 6.862 1.00200.17 ATOM 49 CD2 HIS B 8 17.440 5.194 7.846 1.00200.17 ATOM 50 CE1 HIS B 8 17.461 3.823 6.135 1.00200.17 ATOM 51 NE2 HIS B 8 18.114 4.816 6.710 1.00200.17 ATOM 52 N LYS B 9 16.865 4.264 11.617 1.00200.17 ATOM 53 CA LYS B 9 18.094 4.482 12.375 1.00200.17 ATOM 54 C LYS B 9 18.436 3.322 13.313 1.00200.17 ATOM 55 O LYS B 9 19.619 3.015 13.490 1.00200.17 ATOM 56 CB LYS B 9 18.037 5.799 13.159 1.00200.17 ATOM 57 CG LYS B 9 18.003 7.069 12.306 1.00200.17 ATOM 58 CD LYS B 9 19.348 7.395 11.646 1.00200.17 ATOM 59 CE LYS B 9 19.397 6.910 10.190 1.00200.17 ATOM 60 NZ LYS B 9 20.445 7.617 9.332 1.00200.17 ATOM 61 N ALA B 10 17.405 2.696 13.904 1.00200.17 ATOM 62 CA ALA B 10 17.557 1.549 14.837 1.00200.17 ATOM 63 C ALA B 10 18.037 0.263 14.153 1.00200.17 ATOM 64 O ALA B 10 18.951 -0.410 14.644 1.00200.17 ATOM 65 CB ALA B 10 16.247 1.284 15.607 1.00200.17 ATOM 66 N ILE B 11 17.397 -0.077 13.034 1.00200.17 ATOM 67 CA ILE B 11 17.822 -1.198 12.192 1.00200.17 ATOM 68 C ILE B 11 19.270 -1.019 11.675 1.00200.17 ATOM 69 O ILE B 11 20.111 -1.900 11.887 1.00200.17 ATOM 70 CB ILE B 11 16.810 -1.457 11.025 1.00200.17 ATOM 71 CG1 ILE B 11 15.468 -1.961 11.576 1.00200.17 ATOM 72 CG2 ILE B 11 17.371 -2.459 10.009 1.00200.17 ATOM 73 CD1 ILE B 11 14.327 -1.995 10.555 1.00200.17 ATOM 74 N LEU B 12 19.556 0.118 11.028 1.00200.17 ATOM 75 CA LEU B 12 20.896 0.416 10.482 1.00200.17 ATOM 76 C LEU B 12 22.000 0.447 11.551 1.00200.17 ATOM 77 O LEU B 12 23.170 0.213 11.240 1.00200.17 ATOM 78 CB LEU B 12 20.880 1.728 9.680 1.00200.17 ATOM 79 CG LEU B 12 22.077 2.108 8.796 1.00200.17 ATOM 80 CD1 LEU B 12 22.405 0.998 7.802 1.00200.17 ATOM 81 CD2 LEU B 12 21.785 3.416 8.052 1.00200.17 ATOM 82 N ALA B 13 21.618 0.734 12.797 1.00200.17 ATOM 83 CA ALA B 13 22.538 0.697 13.940 1.00200.17 ATOM 84 C ALA B 13 22.800 -0.729 14.442 1.00200.17 ATOM 85 O ALA B 13 23.944 -1.069 14.768 1.00200.17 ATOM 86 CB ALA B 13 22.034 1.583 15.080 1.00200.17 ATOM 87 N TYR B 14 21.749 -1.551 14.515 1.00200.17 ATOM 88 CA TYR B 14 21.884 -2.966 14.896 1.00200.17 ATOM 89 C TYR B 14 22.472 -3.794 13.752 1.00200.17 ATOM 90 O TYR B 14 23.001 -4.887 13.974 1.00200.17 ATOM 91 CB TYR B 14 20.538 -3.550 15.363 1.00200.17 ATOM 92 CG TYR B 14 20.116 -3.077 16.745 1.00200.17 ATOM 93 CD1 TYR B 14 19.425 -1.871 16.912 1.00200.17 ATOM 94 CD2 TYR B 14 20.417 -3.827 17.889 1.00200.17 ATOM 95 CE1 TYR B 14 19.043 -1.416 18.180 1.00200.17 ATOM 96 CE2 TYR B 14 20.038 -3.382 19.168 1.00200.17 ATOM 97 CZ TYR B 14 19.352 -2.175 19.304 1.00200.17 ATOM 98 OH TYR B 14 18.977 -1.731 20.559 1.00200.17 ATOM 99 N GLU B 15 22.365 -3.258 12.535 1.00200.17 ATOM 100 CA GLU B 15 22.976 -3.830 11.333 1.00200.17 ATOM 101 C GLU B 15 24.501 -3.770 11.406 1.00200.17 ATOM 102 O GLU B 15 25.184 -4.754 11.100 1.00200.17 ATOM 103 CB GLU B 15 22.499 -3.067 10.091 1.00200.17 ATOM 104 CG GLU B 15 23.097 -3.545 8.765 1.00200.17 ATOM 105 CD GLU B 15 22.314 -4.686 8.118 1.00200.17 ATOM 106 OE1 GLU B 15 22.874 -5.366 7.228 1.00200.17 ATOM 107 OE2 GLU B 15 21.138 -4.908 8.480 1.00200.17 ATOM 108 N LYS B 16 25.019 -2.603 11.793 1.00200.17 ATOM 109 CA LYS B 16 26.455 -2.390 11.984 1.00200.17 ATOM 110 C LYS B 16 27.026 -3.264 13.108 1.00200.17 ATOM 111 O LYS B 16 28.147 -3.764 12.998 1.00200.17 ATOM 112 CB LYS B 16 26.746 -0.916 12.276 1.00200.17 ATOM 113 CG LYS B 16 26.385 0.046 11.155 1.00200.17 ATOM 114 CD LYS B 16 26.570 1.478 11.624 1.00200.17 ATOM 115 CE LYS B 16 26.295 2.472 10.517 1.00200.17 ATOM 116 NZ LYS B 16 26.698 3.837 10.945 1.00200.17 ATOM 117 N GLY B 17 26.253 -3.434 14.183 1.00200.17 ATOM 118 CA GLY B 17 26.625 -4.314 15.295 1.00200.17 ATOM 119 C GLY B 17 26.636 -5.781 14.892 1.00200.17 ATOM 120 O GLY B 17 27.524 -6.538 15.299 1.00200.17 ATOM 121 N TRP B 18 25.639 -6.172 14.095 1.00200.17 ATOM 122 CA TRP B 18 25.547 -7.511 13.510 1.00200.17 ATOM 123 C TRP B 18 26.733 -7.829 12.601 1.00200.17 ATOM 124 O TRP B 18 27.282 -8.926 12.657 1.00200.17 ATOM 125 CB TRP B 18 24.236 -7.643 12.731 1.00200.17 ATOM 126 CG TRP B 18 24.122 -8.865 11.864 1.00200.17 ATOM 127 CD1 TRP B 18 23.820 -8.894 10.529 1.00200.17 ATOM 128 CD2 TRP B 18 24.296 -10.233 12.267 1.00200.17 ATOM 129 NE1 TRP B 18 23.791 -10.192 10.078 1.00200.17 ATOM 130 CE2 TRP B 18 24.079 -11.034 11.123 1.00200.17 ATOM 131 CE3 TRP B 18 24.617 -10.860 13.485 1.00200.17 ATOM 132 CZ2 TRP B 18 24.173 -12.434 11.159 1.00200.17 ATOM 133 CZ3 TRP B 18 24.708 -12.251 13.520 1.00200.17 ATOM 134 CH2 TRP B 18 24.488 -13.021 12.363 1.00200.17 ATOM 135 N LEU B 19 27.115 -6.858 11.774 1.00200.17 ATOM 136 CA LEU B 19 28.241 -6.978 10.850 1.00200.17 ATOM 137 C LEU B 19 29.583 -7.123 11.545 1.00200.17 ATOM 138 O LEU B 19 30.440 -7.896 11.108 1.00200.17 ATOM 139 CB LEU B 19 28.293 -5.750 9.950 1.00200.17 ATOM 140 CG LEU B 19 27.870 -5.964 8.501 1.00200.17 ATOM 141 CD1 LEU B 19 27.333 -4.670 7.908 1.00200.17 ATOM 142 CD2 LEU B 19 29.057 -6.482 7.706 1.00200.17 ATOM 143 N ALA B 20 29.765 -6.342 12.605 1.00200.17 ATOM 144 CA ALA B 20 30.973 -6.397 13.412 1.00200.17 ATOM 145 C ALA B 20 31.094 -7.759 14.093 1.00200.17 ATOM 146 O ALA B 20 32.184 -8.342 14.124 1.00200.17 ATOM 147 CB ALA B 20 30.979 -5.270 14.443 1.00200.17 ATOM 148 N PHE B 21 29.967 -8.260 14.609 1.00200.17 ATOM 149 CA PHE B 21 29.902 -9.558 15.292 1.00200.17 ATOM 150 C PHE B 21 30.160 -10.724 14.343 1.00200.17 ATOM 151 O PHE B 21 30.903 -11.660 14.667 1.00200.17 ATOM 152 CB PHE B 21 28.538 -9.752 15.964 1.00200.17 ATOM 153 CG PHE B 21 28.373 -11.101 16.608 1.00200.17 ATOM 154 CD1 PHE B 21 29.099 -11.428 17.753 1.00200.17 ATOM 155 CD2 PHE B 21 27.501 -12.046 16.069 1.00200.17 ATOM 156 CE1 PHE B 21 28.959 -12.674 18.359 1.00200.17 ATOM 157 CE2 PHE B 21 27.352 -13.296 16.665 1.00200.17 ATOM 158 CZ PHE B 21 28.083 -13.611 17.815 1.00200.17 ATOM 159 N SER B 22 29.511 -10.663 13.184 1.00200.17 ATOM 160 CA SER B 22 29.650 -11.671 12.144 1.00200.17 ATOM 161 C SER B 22 31.109 -11.817 11.732 1.00200.17 ATOM 162 O SER B 22 31.654 -12.924 11.768 1.00200.17 ATOM 163 CB SER B 22 28.799 -11.292 10.929 1.00200.17 ATOM 164 OG SER B 22 27.490 -10.896 11.308 1.00200.17 ATOM 165 N LEU B 23 31.725 -10.691 11.356 1.00200.17 ATOM 166 CA LEU B 23 33.146 -10.630 10.993 1.00200.17 ATOM 167 C LEU B 23 34.056 -11.215 12.069 1.00200.17 ATOM 168 O LEU B 23 35.011 -11.933 11.761 1.00200.17 ATOM 169 CB LEU B 23 33.571 -9.189 10.693 1.00200.17 ATOM 170 CG LEU B 23 33.665 -8.781 9.225 1.00200.17 ATOM 171 CD1 LEU B 23 32.283 -8.572 8.621 1.00200.17 ATOM 172 CD2 LEU B 23 34.490 -7.516 9.118 1.00200.17 ATOM 173 N ALA B 24 33.750 -10.903 13.328 1.00200.17 ATOM 174 CA ALA B 24 34.494 -11.434 14.472 1.00200.17 ATOM 175 C ALA B 24 34.361 -12.954 14.602 1.00200.17 ATOM 176 O ALA B 24 35.348 -13.636 14.886 1.00200.17 ATOM 177 CB ALA B 24 34.065 -10.743 15.764 1.00200.17 ATOM 178 N MET B 25 33.147 -13.471 14.391 1.00200.17 ATOM 179 CA MET B 25 32.891 -14.913 14.403 1.00200.17 ATOM 180 C MET B 25 33.639 -15.624 13.270 1.00200.17 ATOM 181 O MET B 25 34.191 -16.712 13.461 1.00200.17 ATOM 182 CB MET B 25 31.387 -15.189 14.310 1.00200.17 ATOM 183 CG MET B 25 31.032 -16.657 14.070 1.00200.17 ATOM 184 SD MET B 25 29.265 -17.032 14.091 1.00200.17 ATOM 185 CE MET B 25 28.624 -15.878 12.871 1.00200.17 ATOM 186 N LEU B 26 33.649 -14.997 12.097 1.00200.17 ATOM 187 CA LEU B 26 34.343 -15.529 10.928 1.00200.17 ATOM 188 C LEU B 26 35.849 -15.614 11.153 1.00200.17 ATOM 189 O LEU B 26 36.474 -16.617 10.809 1.00200.17 ATOM 190 CB LEU B 26 34.034 -14.676 9.693 1.00200.17 ATOM 191 CG LEU B 26 32.820 -14.998 8.804 1.00200.17 ATOM 192 CD1 LEU B 26 31.530 -15.274 9.587 1.00200.17 ATOM 193 CD2 LEU B 26 32.597 -13.881 7.790 1.00200.17 ATOM 194 N PHE B 27 36.418 -14.560 11.739 1.00200.17 ATOM 195 CA PHE B 27 37.847 -14.514 12.039 1.00200.17 ATOM 196 C PHE B 27 38.276 -15.532 13.085 1.00200.17 ATOM 197 O PHE B 27 39.421 -15.987 13.070 1.00200.17 ATOM 198 CB PHE B 27 38.274 -13.108 12.456 1.00200.17 ATOM 199 CG PHE B 27 38.518 -12.196 11.298 1.00200.17 ATOM 200 CD1 PHE B 27 39.597 -12.411 10.447 1.00200.17 ATOM 201 CD2 PHE B 27 37.666 -11.129 11.044 1.00200.17 ATOM 202 CE1 PHE B 27 39.827 -11.575 9.361 1.00200.17 ATOM 203 CE2 PHE B 27 37.884 -10.285 9.960 1.00200.17 ATOM 204 CZ PHE B 27 38.968 -10.507 9.117 1.00200.17 ATOM 205 N VAL B 28 37.361 -15.878 13.990 1.00200.17 ATOM 206 CA VAL B 28 37.588 -16.946 14.973 1.00200.17 ATOM 207 C VAL B 28 37.681 -18.293 14.260 1.00200.17 ATOM 208 O VAL B 28 38.534 -19.124 14.587 1.00200.17 ATOM 209 CB VAL B 28 36.472 -16.991 16.052 1.00200.17 ATOM 210 CG1 VAL B 28 36.495 -18.314 16.812 1.00200.17 ATOM 211 CG2 VAL B 28 36.609 -15.816 17.020 1.00200.17 ATOM 212 N PHE B 29 36.795 -18.494 13.286 1.00200.17 ATOM 213 CA PHE B 29 36.837 -19.669 12.434 1.00200.17 ATOM 214 C PHE B 29 38.176 -19.741 11.718 1.00200.17 ATOM 215 O PHE B 29 38.827 -20.783 11.743 1.00200.17 ATOM 216 CB PHE B 29 35.693 -19.655 11.420 1.00200.17 ATOM 217 CG PHE B 29 34.330 -19.819 12.034 1.00200.17 ATOM 218 CD1 PHE B 29 33.193 -19.421 11.339 1.00200.17 ATOM 219 CD2 PHE B 29 34.177 -20.365 13.310 1.00200.17 ATOM 220 CE1 PHE B 29 31.920 -19.574 11.898 1.00200.17 ATOM 221 CE2 PHE B 29 32.910 -20.519 13.880 1.00200.17 ATOM 222 CZ PHE B 29 31.780 -20.124 13.172 1.00200.17 ATOM 223 N ILE B 30 38.585 -18.622 11.113 1.00200.17 ATOM 224 CA ILE B 30 39.883 -18.492 10.423 1.00200.17 ATOM 225 C ILE B 30 41.080 -18.815 11.332 1.00200.17 ATOM 226 O ILE B 30 42.111 -19.314 10.866 1.00200.17 ATOM 227 CB ILE B 30 40.059 -17.072 9.807 1.00200.17 ATOM 228 CG1 ILE B 30 39.019 -16.831 8.706 1.00200.17 ATOM 229 CG2 ILE B 30 41.475 -16.882 9.255 1.00200.17 ATOM 230 CD1 ILE B 30 38.800 -15.361 8.357 1.00200.17 ATOM 231 N ALA B 31 40.936 -18.519 12.622 1.00200.17 ATOM 232 CA ALA B 31 41.948 -18.844 13.624 1.00200.17 ATOM 233 C ALA B 31 41.933 -20.330 13.982 1.00200.17 ATOM 234 O ALA B 31 42.990 -20.923 14.229 1.00200.17 ATOM 235 CB ALA B 31 41.747 -18.000 14.872 1.00200.17 ATOM 236 N LEU B 32 40.729 -20.913 14.016 1.00200.17 ATOM 237 CA LEU B 32 40.528 -22.331 14.357 1.00200.17 ATOM 238 C LEU B 32 40.801 -23.272 13.181 1.00200.17 ATOM 239 O LEU B 32 40.922 -24.497 13.358 1.00200.17 ATOM 240 CB LEU B 32 39.109 -22.560 14.894 1.00200.17 ATOM 241 CG LEU B 32 38.699 -21.825 16.179 1.00200.17 ATOM 242 CD1 LEU B 32 37.198 -21.918 16.403 1.00200.17 ATOM 243 CD2 LEU B 32 39.450 -22.349 17.408 1.00200.17 ATOM 244 N ILE B 33 40.863 -22.685 11.982 1.00200.17 ATOM 245 CA ILE B 33 41.320 -23.376 10.773 1.00200.17 ATOM 246 C ILE B 33 42.852 -23.263 10.636 1.00200.17 ATOM 247 O ILE B 33 43.513 -24.226 10.239 1.00200.17 ATOM 248 CB ILE B 33 40.618 -22.824 9.494 1.00200.17 ATOM 249 CG1 ILE B 33 39.094 -22.945 9.624 1.00200.17 ATOM 250 CG2 ILE B 33 41.083 -23.577 8.237 1.00200.17 ATOM 251 CD1 ILE B 33 38.311 -22.005 8.710 1.00200.17 ATOM 252 N ALA B 34 43.404 -22.091 10.962 1.00200.17 ATOM 253 CA ALA B 34 44.856 -21.889 10.993 1.00200.17 ATOM 254 C ALA B 34 45.522 -22.801 12.030 1.00200.17 ATOM 255 O ALA B 34 46.665 -23.228 11.832 1.00200.17 ATOM 256 CB ALA B 34 45.193 -20.427 11.259 1.00200.17 ATOM 257 N TYR B 35 44.797 -23.086 13.122 1.00200.17 ATOM 258 CA TYR B 35 45.219 -24.049 14.153 1.00200.17 ATOM 259 C TYR B 35 45.381 -25.477 13.621 1.00200.17 ATOM 260 O TYR B 35 46.409 -26.115 13.880 1.00200.17 ATOM 261 CB TYR B 35 44.244 -24.058 15.342 1.00200.17 ATOM 262 CG TYR B 35 44.526 -25.163 16.348 1.00200.17 ATOM 263 CD1 TYR B 35 45.685 -25.141 17.128 1.00200.17 ATOM 264 CD2 TYR B 35 43.640 -26.232 16.517 1.00200.17 ATOM 265 CE1 TYR B 35 45.959 -26.159 18.056 1.00200.17 ATOM 266 CE2 TYR B 35 43.903 -27.254 17.445 1.00200.17 ATOM 267 CZ TYR B 35 45.061 -27.212 18.209 1.00200.17 ATOM 268 OH TYR B 35 45.312 -28.221 19.120 1.00200.17 ATOM 269 N THR B 36 44.357 -25.971 12.907 1.00200.17 ATOM 270 CA THR B 36 44.358 -27.330 12.316 1.00200.17 ATOM 271 C THR B 36 45.449 -27.540 11.242 1.00200.17 ATOM 272 O THR B 36 45.843 -28.684 10.957 1.00200.17 ATOM 273 CB THR B 36 42.955 -27.751 11.736 1.00200.17 ATOM 274 OG1 THR B 36 42.697 -27.077 10.494 1.00200.17 ATOM 275 CG2 THR B 36 41.821 -27.463 12.725 1.00200.17 TER