HEADER IMMUNE SYSTEM 31-DEC-69 3TVM TITLE Structure of the mouse CD1d-SMC124-iNKT TCR complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Antigen-presenting glycoprotein CD1d1; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.80 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS E 188 REMARK 465 PRO E 189 REMARK 465 VAL E 190 REMARK 465 ALA E 191 REMARK 465 SER E 198 REMARK 465 SER E 199 REMARK 465 ALA E 200 REMARK 465 HIS E 201 REMARK 465 GLY E 202 REMARK 465 HIS E 203 REMARK 465 ARG E 204 REMARK 465 GLN E 205 REMARK 465 TRP E 219 REMARK 465 VAL E 220 REMARK 465 MET E 221 REMARK 465 TRP E 222 REMARK 465 MET E 223 REMARK 465 ARG E 224 REMARK 465 GLY E 225 REMARK 465 ASP E 226 REMARK 465 GLN E 227 REMARK 465 GLU E 228 REMARK 465 GLN E 229 REMARK 465 GLN E 230 REMARK 465 GLY E 231 REMARK 465 THR E 232 REMARK 465 HIS E 233 REMARK 465 ARG E 234 REMARK 465 GLY E 235 REMARK 465 ASP E 236 DBREF 3TVM E 1 279 UNP P11609 CD1D1_MOUSE 19 297 MODRES 3TVM ASN E 42 ASN GLYCOSYLATION SITE MODRES 3TVM ASN E 165 ASN GLYCOSYLATION SITE MODRES 3TVM ASN E 20 ASN GLYCOSYLATION SITE SEQRES 1 E 64 GLN GLU LYS PRO VAL ALA TRP LEU SER SER VAL PRO SER SEQRES 2 E 64 SER ALA HIS GLY HIS ARG GLN LEU VAL CYS HIS VAL SER SEQRES 3 E 64 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 4 E 64 GLY ASP GLN GLU GLN GLN GLY THR HIS ARG GLY ASP PHE SEQRES 5 E 64 LEU PRO ASN ALA ASP GLU THR TRP TYR LEU GLN ALA ATOM 1 N GLN E 186 32.125 29.227 51.376 1.00158.39 ATOM 2 CA GLN E 186 33.249 30.094 51.737 1.00157.53 ATOM 3 C GLN E 186 34.574 29.526 51.234 1.00156.14 ATOM 4 O GLN E 186 34.818 28.322 51.329 1.00160.15 ATOM 5 CB GLN E 186 33.306 30.297 53.255 1.00165.43 ATOM 6 CG GLN E 186 32.611 31.561 53.757 1.00165.36 ATOM 7 CD GLN E 186 33.540 32.766 53.840 1.00162.56 ATOM 8 OE1 GLN E 186 33.167 33.875 53.461 1.00158.70 ATOM 9 NE2 GLN E 186 34.753 32.554 54.344 1.00165.44 ATOM 10 N GLU E 187 35.420 30.399 50.692 1.00151.25 ATOM 11 CA GLU E 187 36.750 30.007 50.227 1.00150.51 ATOM 12 C GLU E 187 37.812 30.966 50.756 1.00151.82 ATOM 13 O GLU E 187 37.621 32.183 50.749 1.00148.98 ATOM 14 CB GLU E 187 36.808 29.945 48.694 1.00143.14 ATOM 15 CG GLU E 187 35.909 28.889 48.044 1.00142.11 ATOM 16 CD GLU E 187 36.255 27.465 48.455 1.00148.11 ATOM 17 OE1 GLU E 187 37.447 27.091 48.391 1.00149.72 ATOM 18 OE2 GLU E 187 35.328 26.717 48.839 1.00151.73 ATOM 19 N TRP E 192 50.488 35.387 47.221 1.00160.32 ATOM 20 CA TRP E 192 51.841 35.636 46.735 1.00164.12 ATOM 21 C TRP E 192 52.056 37.110 46.394 1.00161.64 ATOM 22 O TRP E 192 51.187 37.756 45.798 1.00154.64 ATOM 23 CB TRP E 192 52.148 34.757 45.520 1.00162.30 ATOM 24 N LEU E 193 53.223 37.626 46.775 1.00168.27 ATOM 25 CA LEU E 193 53.560 39.039 46.594 1.00167.87 ATOM 26 C LEU E 193 54.558 39.273 45.457 1.00168.72 ATOM 27 O LEU E 193 55.341 38.384 45.109 1.00172.45 ATOM 28 CB LEU E 193 54.100 39.626 47.901 1.00175.41 ATOM 29 N SER E 194 54.517 40.477 44.888 1.00166.04 ATOM 30 CA SER E 194 55.401 40.874 43.790 1.00167.35 ATOM 31 C SER E 194 55.657 42.383 43.800 1.00169.01 ATOM 32 O SER E 194 54.975 43.129 44.504 1.00167.69 ATOM 33 CB SER E 194 54.810 40.446 42.442 1.00160.55 ATOM 34 N SER E 195 56.642 42.823 43.016 1.00172.62 ATOM 35 CA SER E 195 57.014 44.238 42.952 1.00175.61 ATOM 36 C SER E 195 57.454 44.654 41.550 1.00175.49 ATOM 37 O SER E 195 58.385 44.076 40.987 1.00179.23 ATOM 38 CB SER E 195 58.120 44.550 43.967 1.00184.89 ATOM 39 OG SER E 195 59.283 43.783 43.710 1.00190.83 ATOM 40 N VAL E 196 56.782 45.665 41.002 1.00172.17 ATOM 41 CA VAL E 196 57.079 46.176 39.663 1.00172.68 ATOM 42 C VAL E 196 57.832 47.509 39.710 1.00179.53 ATOM 43 O VAL E 196 57.475 48.392 40.492 1.00180.57 ATOM 44 CB VAL E 196 55.791 46.354 38.831 1.00165.45 ATOM 45 N PRO E 197 58.881 47.655 38.876 1.00184.95 ATOM 46 CA PRO E 197 59.621 48.916 38.794 1.00192.23 ATOM 47 C PRO E 197 58.851 49.975 38.007 1.00190.21 ATOM 48 O PRO E 197 57.873 50.530 38.510 1.00186.83 ATOM 49 CB PRO E 197 60.904 48.532 38.038 1.00198.54 ATOM 50 CG PRO E 197 60.925 47.032 37.999 1.00195.36 ATOM 51 CD PRO E 197 59.497 46.614 38.035 1.00185.70 ATOM 52 N LEU E 206 55.013 47.185 43.539 1.00170.69 ATOM 53 CA LEU E 206 54.478 46.528 44.726 1.00169.88 ATOM 54 C LEU E 206 53.042 46.065 44.495 1.00162.06 ATOM 55 O LEU E 206 52.163 46.875 44.193 1.00159.19 ATOM 56 CB LEU E 206 54.549 47.463 45.937 1.00175.04 ATOM 57 N VAL E 207 52.817 44.759 44.636 1.00159.61 ATOM 58 CA VAL E 207 51.504 44.156 44.398 1.00152.77 ATOM 59 C VAL E 207 51.320 42.837 45.148 1.00152.84 ATOM 60 O VAL E 207 52.269 42.068 45.320 1.00156.89 ATOM 61 CB VAL E 207 51.259 43.908 42.890 1.00147.89 ATOM 62 N CYS E 208 50.090 42.589 45.589 1.00149.25 ATOM 63 CA CYS E 208 49.723 41.330 46.230 1.00149.37 ATOM 64 C CYS E 208 48.481 40.756 45.557 1.00142.65 ATOM 65 O CYS E 208 47.457 41.436 45.449 1.00139.33 ATOM 66 CB CYS E 208 49.472 41.536 47.726 1.00153.75 ATOM 67 N HIS E 209 48.581 39.509 45.098 1.00141.46 ATOM 68 CA HIS E 209 47.477 38.860 44.384 1.00135.66 ATOM 69 C HIS E 209 46.865 37.668 45.127 1.00136.42 ATOM 70 O HIS E 209 47.564 36.711 45.474 1.00140.56 ATOM 71 CB HIS E 209 47.879 38.479 42.948 1.00133.02 ATOM 72 CG HIS E 209 49.231 37.842 42.828 1.00137.71 ATOM 73 ND1 HIS E 209 49.416 36.476 42.852 1.00139.49 ATOM 74 CD2 HIS E 209 50.460 38.384 42.655 1.00141.92 ATOM 75 CE1 HIS E 209 50.702 36.205 42.713 1.00144.59 ATOM 76 NE2 HIS E 209 51.357 37.345 42.593 1.00146.06 ATOM 77 N VAL E 210 45.555 37.751 45.369 1.00133.28 ATOM 78 CA VAL E 210 44.791 36.684 46.025 1.00133.99 ATOM 79 C VAL E 210 43.953 35.939 44.985 1.00128.86 ATOM 80 O VAL E 210 43.266 36.560 44.170 1.00124.39 ATOM 81 CB VAL E 210 43.865 37.231 47.143 1.00135.53 ATOM 82 CG1 VAL E 210 43.412 36.105 48.071 1.00139.12 ATOM 83 CG2 VAL E 210 44.563 38.321 47.948 1.00139.75 ATOM 84 N SER E 211 44.015 34.610 45.020 1.00130.33 ATOM 85 CA SER E 211 43.354 33.778 44.017 1.00126.35 ATOM 86 C SER E 211 42.618 32.597 44.636 1.00128.54 ATOM 87 O SER E 211 43.138 31.927 45.534 1.00134.18 ATOM 88 CB SER E 211 44.372 33.270 42.994 1.00126.25 ATOM 89 OG SER E 211 43.762 32.416 42.044 1.00123.16 ATOM 90 N GLY E 212 41.407 32.352 44.142 1.00124.82 ATOM 91 CA GLY E 212 40.606 31.203 44.559 1.00126.86 ATOM 92 C GLY E 212 39.616 31.463 45.680 1.00128.90 ATOM 93 O GLY E 212 39.141 30.521 46.313 1.00132.65 ATOM 94 N PHE E 213 39.282 32.733 45.908 1.00127.17 ATOM 95 CA PHE E 213 38.449 33.119 47.048 1.00130.18 ATOM 96 C PHE E 213 36.982 33.389 46.710 1.00127.61 ATOM 97 O PHE E 213 36.654 33.847 45.619 1.00123.08 ATOM 98 CB PHE E 213 39.066 34.314 47.794 1.00132.21 ATOM 99 CG PHE E 213 38.842 35.646 47.125 1.00127.95 ATOM 100 CD1 PHE E 213 39.655 36.059 46.073 1.00124.60 ATOM 101 CD2 PHE E 213 37.832 36.497 47.565 1.00128.33 ATOM 102 CE1 PHE E 213 39.454 37.293 45.459 1.00122.08 ATOM 103 CE2 PHE E 213 37.622 37.733 46.959 1.00125.85 ATOM 104 CZ PHE E 213 38.434 38.132 45.904 1.00122.83 ATOM 105 N TYR E 214 36.112 33.095 47.672 1.00131.66 ATOM 106 CA TYR E 214 34.680 33.345 47.561 1.00131.03 ATOM 107 C TYR E 214 34.142 33.710 48.945 1.00136.63 ATOM 108 O TYR E 214 34.567 33.120 49.942 1.00141.64 ATOM 109 CB TYR E 214 33.964 32.106 47.015 1.00130.64 ATOM 110 CG TYR E 214 32.656 32.407 46.319 1.00128.34 ATOM 111 CD1 TYR E 214 31.438 32.107 46.920 1.00132.10 ATOM 112 CD2 TYR E 214 32.637 32.999 45.060 1.00123.37 ATOM 113 CE1 TYR E 214 30.233 32.386 46.283 1.00131.13 ATOM 114 CE2 TYR E 214 31.441 33.284 44.415 1.00122.60 ATOM 115 CZ TYR E 214 30.243 32.974 45.031 1.00126.46 ATOM 116 OH TYR E 214 29.056 33.253 44.394 1.00126.66 ATOM 117 N PRO E 215 33.215 34.689 49.021 1.00136.75 ATOM 118 CA PRO E 215 32.640 35.465 47.925 1.00132.58 ATOM 119 C PRO E 215 33.371 36.784 47.671 1.00130.75 ATOM 120 O PRO E 215 34.479 36.985 48.174 1.00131.69 ATOM 121 CB PRO E 215 31.207 35.727 48.406 1.00136.22 ATOM 122 CG PRO E 215 31.253 35.587 49.918 1.00142.28 ATOM 123 CD PRO E 215 32.610 35.064 50.311 1.00142.62 ATOM 124 N LYS E 216 32.735 37.667 46.903 1.00129.14 ATOM 125 CA LYS E 216 33.322 38.944 46.480 1.00127.97 ATOM 126 C LYS E 216 33.726 39.909 47.610 1.00131.95 ATOM 127 O LYS E 216 34.800 40.511 47.527 1.00131.29 ATOM 128 CB LYS E 216 32.408 39.655 45.472 1.00127.08 ATOM 129 N PRO E 217 32.879 40.070 48.656 1.00136.69 ATOM 130 CA PRO E 217 33.234 41.014 49.725 1.00141.07 ATOM 131 C PRO E 217 34.561 40.691 50.419 1.00142.09 ATOM 132 O PRO E 217 34.610 39.832 51.302 1.00145.25 ATOM 133 CB PRO E 217 32.066 40.886 50.712 1.00146.38 ATOM 134 CG PRO E 217 30.933 40.404 49.894 1.00144.69 ATOM 135 CD PRO E 217 31.542 39.486 48.881 1.00139.00 ATOM 136 N VAL E 218 35.621 41.381 49.999 1.00140.34 ATOM 137 CA VAL E 218 36.956 41.242 50.584 1.00142.12 ATOM 138 C VAL E 218 37.699 42.577 50.518 1.00143.13 ATOM 139 O VAL E 218 38.076 43.142 51.544 1.00148.00 ATOM 140 CB VAL E 218 37.781 40.124 49.886 1.00138.68 ATOM 141 CG1 VAL E 218 39.273 40.457 49.867 1.00139.38 ATOM 142 CG2 VAL E 218 37.538 38.775 50.559 1.00141.07 ATOM 143 N PHE E 237 38.793 42.638 40.272 1.00115.42 ATOM 144 CA PHE E 237 37.963 41.438 40.335 1.00113.28 ATOM 145 C PHE E 237 37.980 40.685 39.010 1.00110.57 ATOM 146 O PHE E 237 37.421 41.149 38.013 1.00110.89 ATOM 147 CB PHE E 237 36.524 41.791 40.727 1.00114.99 ATOM 148 CG PHE E 237 36.369 42.223 42.160 1.00117.99 ATOM 149 CD1 PHE E 237 36.272 41.279 43.180 1.00118.05 ATOM 150 CD2 PHE E 237 36.307 43.574 42.489 1.00121.47 ATOM 151 CE1 PHE E 237 36.125 41.675 44.508 1.00121.59 ATOM 152 CE2 PHE E 237 36.159 43.981 43.815 1.00124.78 ATOM 153 CZ PHE E 237 36.068 43.028 44.826 1.00124.82 ATOM 154 N LEU E 238 38.629 39.522 39.008 1.00108.78 ATOM 155 CA LEU E 238 38.785 38.714 37.798 1.00106.67 ATOM 156 C LEU E 238 38.407 37.256 38.066 1.00105.47 ATOM 157 O LEU E 238 38.773 36.709 39.100 1.00106.43 ATOM 158 CB LEU E 238 40.222 38.807 37.267 1.00106.90 ATOM 159 CG LEU E 238 40.903 40.180 37.172 1.00108.95 ATOM 160 CD1 LEU E 238 42.381 40.022 36.860 1.00110.05 ATOM 161 CD2 LEU E 238 40.236 41.089 36.150 1.00109.67 ATOM 162 N PRO E 239 37.675 36.620 37.133 1.00104.19 ATOM 163 CA PRO E 239 37.168 35.265 37.356 1.00103.80 ATOM 164 C PRO E 239 38.195 34.166 37.092 1.00103.62 ATOM 165 O PRO E 239 39.152 34.378 36.349 1.00103.35 ATOM 166 CB PRO E 239 36.031 35.158 36.340 1.00103.22 ATOM 167 CG PRO E 239 36.465 36.019 35.219 1.00102.96 ATOM 168 CD PRO E 239 37.244 37.155 35.827 1.00103.91 ATOM 169 N ASN E 240 37.977 33.000 37.697 1.00104.66 ATOM 170 CA ASN E 240 38.802 31.818 37.455 1.00105.76 ATOM 171 C ASN E 240 38.000 30.692 36.800 1.00105.55 ATOM 172 O ASN E 240 36.786 30.602 36.984 1.00105.53 ATOM 173 CB ASN E 240 39.452 31.332 38.756 1.00108.99 ATOM 174 N ALA E 241 38.694 29.832 36.056 1.00106.24 ATOM 175 CA ALA E 241 38.076 28.772 35.245 1.00106.47 ATOM 176 C ALA E 241 37.251 27.744 36.026 1.00108.73 ATOM 177 O ALA E 241 36.486 26.981 35.432 1.00109.14 ATOM 178 CB ALA E 241 39.136 28.068 34.415 1.00107.77 ATOM 179 N ASP E 242 37.418 27.718 37.346 1.00110.98 ATOM 180 CA ASP E 242 36.643 26.829 38.207 1.00114.12 ATOM 181 C ASP E 242 35.619 27.615 39.028 1.00113.83 ATOM 182 O ASP E 242 35.161 27.150 40.072 1.00117.17 ATOM 183 CB ASP E 242 37.576 26.029 39.122 1.00118.76 ATOM 184 N GLU E 243 35.256 28.800 38.532 1.00110.71 ATOM 185 CA GLU E 243 34.354 29.728 39.228 1.00110.92 ATOM 186 C GLU E 243 34.890 30.078 40.617 1.00113.11 ATOM 187 O GLU E 243 34.210 29.880 41.623 1.00115.97 ATOM 188 CB GLU E 243 32.926 29.163 39.309 1.00112.73 ATOM 189 N THR E 244 36.109 30.612 40.658 1.00112.41 ATOM 190 CA THR E 244 36.833 30.760 41.920 1.00115.60 ATOM 191 C THR E 244 37.325 32.181 42.228 1.00114.69 ATOM 192 O THR E 244 37.835 32.431 43.320 1.00117.78 ATOM 193 CB THR E 244 38.032 29.773 42.001 1.00118.21 ATOM 194 OG1 THR E 244 38.005 28.863 40.894 1.00116.95 ATOM 195 CG2 THR E 244 37.983 28.990 43.301 1.00123.80 ATOM 196 N TRP E 245 37.166 33.100 41.275 1.00111.30 ATOM 197 CA TRP E 245 37.609 34.503 41.411 1.00110.91 ATOM 198 C TRP E 245 39.136 34.703 41.517 1.00111.88 ATOM 199 O TRP E 245 39.907 33.738 41.539 1.00113.28 ATOM 200 CB TRP E 245 36.897 35.223 42.573 1.00113.20 ATOM 201 CG TRP E 245 35.437 35.545 42.342 1.00112.91 ATOM 202 CD1 TRP E 245 34.372 35.023 43.017 1.00114.99 ATOM 203 CD2 TRP E 245 34.890 36.470 41.388 1.00111.42 ATOM 204 NE1 TRP E 245 33.198 35.557 42.544 1.00114.79 ATOM 205 CE2 TRP E 245 33.485 36.447 41.544 1.00112.92 ATOM 206 CE3 TRP E 245 35.449 37.311 40.414 1.00109.82 ATOM 207 CZ2 TRP E 245 32.630 37.232 40.763 1.00113.18 ATOM 208 CZ3 TRP E 245 34.596 38.092 39.637 1.00110.03 ATOM 209 CH2 TRP E 245 33.202 38.045 39.819 1.00111.83 ATOM 210 N TYR E 246 39.542 35.975 41.568 1.00111.89 ATOM 211 CA TYR E 246 40.940 36.416 41.644 1.00113.26 ATOM 212 C TYR E 246 40.961 37.940 41.796 1.00113.87 ATOM 213 O TYR E 246 40.221 38.645 41.104 1.00112.24 ATOM 214 CB TYR E 246 41.716 35.998 40.385 1.00111.59 ATOM 215 CG TYR E 246 43.107 36.590 40.258 1.00113.25 ATOM 216 CD1 TYR E 246 44.233 35.860 40.634 1.00115.99 ATOM 217 CD2 TYR E 246 43.297 37.875 39.745 1.00112.64 ATOM 218 CE1 TYR E 246 45.512 36.398 40.514 1.00118.35 ATOM 219 CE2 TYR E 246 44.570 38.423 39.625 1.00114.92 ATOM 220 CZ TYR E 246 45.672 37.680 40.010 1.00117.64 ATOM 221 OH TYR E 246 46.931 38.222 39.885 1.00120.66 ATOM 222 N LEU E 247 41.808 38.445 42.691 1.00117.05 ATOM 223 CA LEU E 247 41.933 39.890 42.913 1.00118.51 ATOM 224 C LEU E 247 43.377 40.306 43.198 1.00121.61 ATOM 225 O LEU E 247 44.167 39.508 43.702 1.00123.86 ATOM 226 CB LEU E 247 41.015 40.342 44.053 1.00120.49 ATOM 227 N GLN E 248 43.709 41.557 42.876 1.00122.63 ATOM 228 CA GLN E 248 45.070 42.078 43.050 1.00126.20 ATOM 229 C GLN E 248 45.104 43.510 43.588 1.00129.39 ATOM 230 O GLN E 248 44.253 44.334 43.246 1.00128.57 ATOM 231 CB GLN E 248 45.850 41.998 41.732 1.00125.08 ATOM 232 N ALA E 249 46.097 43.789 44.432 1.00133.91 ATOM 233 CA ALA E 249 46.328 45.127 44.982 1.00137.93 ATOM 234 C ALA E 249 47.800 45.318 45.337 1.00142.87 ATOM 235 O ALA E 249 48.435 46.284 44.911 1.00145.29 ATOM 236 CB ALA E 249 45.450 45.365 46.204 1.00139.61 TER