HEADER PROTEIN BINDING 18-DEC-11 3V64 TITLE Crystal Structure of agrin and LRP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: agrin; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: beta 1 propeller (unp residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.85 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 18 REMARK 465 GLY C 19 REMARK 465 ALA C 20 DBREF 3V64 C 396 737 UNP Q9QYP1 LRP4_RAT 396 737 MODRES 3V64 ASN C 103 ASN GLYCOSYLATION SITE SEQRES 1 C 35 TYR CYS SER GLN GLY CYS THR ASN SER GLU GLY ALA PHE SEQRES 2 C 35 GLN CYS TRP CYS GLU ALA GLY TYR GLU LEU ARG PRO ASP SEQRES 3 C 35 ARG ARG SER CYS LYS ALA LEU GLY PRO ATOM 1 N TYR C 404 15.090 -8.786 22.499 1.00127.94 ATOM 2 CA TYR C 404 14.467 -7.830 23.408 1.00131.07 ATOM 3 C TYR C 404 14.998 -6.415 23.224 1.00126.72 ATOM 4 O TYR C 404 14.601 -5.503 23.942 1.00124.79 ATOM 5 CB TYR C 404 14.682 -8.249 24.861 1.00134.84 ATOM 6 CG TYR C 404 13.664 -9.234 25.379 1.00142.81 ATOM 7 CD1 TYR C 404 12.463 -8.803 25.927 1.00144.48 ATOM 8 CD2 TYR C 404 13.909 -10.598 25.327 1.00145.06 ATOM 9 CE1 TYR C 404 11.532 -9.706 26.404 1.00145.45 ATOM 10 CE2 TYR C 404 12.987 -11.506 25.801 1.00146.34 ATOM 11 CZ TYR C 404 11.801 -11.057 26.338 1.00145.98 ATOM 12 OH TYR C 404 10.881 -11.964 26.811 1.00144.95 ATOM 13 N CYS C 405 15.893 -6.216 22.274 1.00108.04 ATOM 14 CA CYS C 405 16.424 -4.883 22.084 1.00 97.70 ATOM 15 C CYS C 405 15.521 -4.214 21.059 1.00 91.22 ATOM 16 O CYS C 405 15.383 -4.671 19.915 1.00 90.76 ATOM 17 CB CYS C 405 17.819 -4.990 21.455 1.00 95.40 ATOM 18 SG CYS C 405 19.157 -5.456 22.569 1.00 95.82 ATOM 19 N SER C 406 14.926 -3.110 21.477 1.00 81.24 ATOM 20 CA SER C 406 13.960 -2.399 20.665 1.00 75.28 ATOM 21 C SER C 406 14.630 -1.909 19.402 1.00 74.62 ATOM 22 O SER C 406 14.034 -1.901 18.327 1.00 72.52 ATOM 23 CB SER C 406 13.370 -1.231 21.451 1.00 71.03 ATOM 24 OG SER C 406 12.366 -1.688 22.340 1.00 69.84 ATOM 25 N GLN C 407 15.872 -1.473 19.538 1.00 80.90 ATOM 26 CA GLN C 407 16.576 -0.968 18.386 1.00 85.50 ATOM 27 C GLN C 407 17.782 -1.759 17.922 1.00 87.21 ATOM 28 O GLN C 407 17.731 -2.449 16.907 1.00 87.05 ATOM 29 CB GLN C 407 17.077 0.462 18.684 1.00 86.33 ATOM 30 CG GLN C 407 16.006 1.492 19.007 1.00 86.69 ATOM 31 CD GLN C 407 15.228 1.916 17.781 1.00 85.06 ATOM 32 OE1 GLN C 407 15.775 1.999 16.681 1.00 78.80 ATOM 33 NE2 GLN C 407 13.941 2.182 17.962 1.00 83.48 ATOM 34 N GLY C 408 18.888 -1.610 18.646 1.00 83.56 ATOM 35 CA GLY C 408 20.112 -2.309 18.309 1.00 83.33 ATOM 36 C GLY C 408 20.929 -2.720 19.514 1.00 88.06 ATOM 37 O GLY C 408 20.914 -2.049 20.547 1.00 84.78 ATOM 38 N CYS C 409 21.655 -3.823 19.378 1.00106.18 ATOM 39 CA CYS C 409 22.590 -4.242 20.409 1.00115.65 ATOM 40 C CYS C 409 23.996 -4.319 19.804 1.00127.23 ATOM 41 O CYS C 409 24.225 -5.047 18.850 1.00127.29 ATOM 42 CB CYS C 409 22.194 -5.615 20.957 1.00118.88 ATOM 43 SG CYS C 409 21.999 -6.901 19.696 1.00126.47 ATOM 44 N THR C 410 24.944 -3.582 20.379 1.00142.07 ATOM 45 CA THR C 410 26.317 -3.674 19.916 1.00150.10 ATOM 46 C THR C 410 27.344 -3.907 21.056 1.00151.24 ATOM 47 O THR C 410 27.372 -3.181 22.037 1.00152.27 ATOM 48 CB THR C 410 26.668 -2.481 18.982 1.00157.10 ATOM 49 OG1 THR C 410 25.719 -2.420 17.894 1.00193.04 ATOM 50 CG2 THR C 410 28.050 -2.602 18.385 1.00154.18 ATOM 51 N ASN C 411 28.220 -4.888 20.871 1.00142.51 ATOM 52 CA ASN C 411 29.301 -5.278 21.829 1.00138.71 ATOM 53 C ASN C 411 29.504 -6.766 22.209 1.00126.04 ATOM 54 O ASN C 411 30.282 -7.096 23.112 1.00122.30 ATOM 55 CB ASN C 411 29.095 -4.518 23.117 1.00139.66 ATOM 56 CG ASN C 411 30.407 -4.393 23.848 1.00141.02 ATOM 57 OD1 ASN C 411 31.380 -4.995 23.448 1.00140.71 ATOM 58 ND2 ASN C 411 30.401 -3.631 24.930 1.00141.64 ATOM 59 N SER C 412 28.789 -7.678 21.587 1.00103.70 ATOM 60 CA SER C 412 28.956 -9.075 21.922 1.00 91.04 ATOM 61 C SER C 412 29.783 -9.717 20.850 1.00 91.18 ATOM 62 O SER C 412 29.666 -9.320 19.691 1.00 89.34 ATOM 63 CB SER C 412 27.627 -9.759 21.880 1.00 20.00 ATOM 64 OG SER C 412 26.896 -9.089 20.874 1.00 20.00 ATOM 65 N PHE C 416 26.529 -7.472 25.328 1.00138.57 ATOM 66 CA PHE C 416 25.334 -7.571 24.496 1.00140.30 ATOM 67 C PHE C 416 24.277 -6.538 24.900 1.00133.44 ATOM 68 O PHE C 416 23.073 -6.801 24.824 1.00131.40 ATOM 69 CB PHE C 416 24.746 -8.980 24.577 1.00 20.00 ATOM 70 CG PHE C 416 23.469 -9.150 23.804 1.00 20.00 ATOM 71 CD1 PHE C 416 23.492 -9.343 22.433 1.00 20.00 ATOM 72 CD2 PHE C 416 22.244 -9.116 24.449 1.00 20.00 ATOM 73 CE1 PHE C 416 22.319 -9.501 21.721 1.00 20.00 ATOM 74 CE2 PHE C 416 21.067 -9.272 23.741 1.00 20.00 ATOM 75 CZ PHE C 416 21.104 -9.465 22.375 1.00 20.00 ATOM 76 N GLN C 417 24.739 -5.363 25.321 1.00119.06 ATOM 77 CA GLN C 417 23.851 -4.294 25.780 1.00109.30 ATOM 78 C GLN C 417 23.121 -3.613 24.623 1.00103.72 ATOM 79 O GLN C 417 23.703 -3.389 23.559 1.00101.83 ATOM 80 CB GLN C 417 24.634 -3.258 26.591 1.00109.63 ATOM 81 CG GLN C 417 25.192 -3.788 27.903 1.00110.67 ATOM 82 CD GLN C 417 25.715 -2.691 28.811 1.00111.38 ATOM 83 OE1 GLN C 417 26.454 -1.805 28.378 1.00112.15 ATOM 84 NE2 GLN C 417 25.339 -2.750 30.083 1.00110.72 ATOM 85 N CYS C 418 21.844 -3.293 24.839 1.00 95.60 ATOM 86 CA CYS C 418 21.042 -2.595 23.829 1.00 90.62 ATOM 87 C CYS C 418 21.442 -1.119 23.727 1.00 88.57 ATOM 88 O CYS C 418 21.979 -0.540 24.677 1.00 85.84 ATOM 89 CB CYS C 418 19.536 -2.708 24.113 1.00 86.82 ATOM 90 SG CYS C 418 18.796 -4.371 24.206 1.00 81.49 ATOM 91 N TRP C 419 21.175 -0.524 22.566 1.00 87.20 ATOM 92 CA TRP C 419 21.508 0.874 22.300 1.00 68.92 ATOM 93 C TRP C 419 20.280 1.635 21.863 1.00 60.16 ATOM 94 O TRP C 419 19.364 1.055 21.276 1.00 55.19 ATOM 95 CB TRP C 419 22.644 0.969 21.268 1.00 27.80 ATOM 96 CG TRP C 419 22.231 1.321 19.852 1.00 18.81 ATOM 97 CD1 TRP C 419 21.381 2.345 19.449 1.00 19.99 ATOM 98 CD2 TRP C 419 22.686 0.698 18.600 1.00 16.08 ATOM 99 NE1 TRP C 419 21.256 2.377 18.087 1.00 16.25 ATOM 100 CE2 TRP C 419 22.017 1.418 17.517 1.00 15.87 ATOM 101 CE3 TRP C 419 23.540 -0.353 18.282 1.00 15.39 ATOM 102 CZ2 TRP C 419 22.206 1.088 16.183 1.00 15.62 ATOM 103 CZ3 TRP C 419 23.722 -0.677 16.931 1.00 15.07 ATOM 104 CH2 TRP C 419 23.069 0.028 15.909 1.00 15.50 ATOM 105 N CYS C 420 20.243 2.935 22.150 1.00 56.94 ATOM 106 CA CYS C 420 19.107 3.782 21.775 1.00 61.75 ATOM 107 C CYS C 420 19.513 4.900 20.812 1.00 65.18 ATOM 108 O CYS C 420 20.537 5.562 21.006 1.00 68.39 ATOM 109 CB CYS C 420 18.459 4.388 23.021 1.00 75.92 ATOM 110 SG CYS C 420 16.792 3.850 23.524 1.00 97.12 ATOM 111 N GLU C 421 18.694 5.103 19.780 1.00 71.82 ATOM 112 CA GLU C 421 18.926 6.144 18.776 1.00 74.79 ATOM 113 C GLU C 421 18.657 7.538 19.349 1.00 69.12 ATOM 114 O GLU C 421 18.008 7.671 20.387 1.00 65.44 ATOM 115 CB GLU C 421 18.049 5.902 17.543 1.00 80.22 ATOM 116 CG GLU C 421 18.617 6.484 16.256 1.00 84.94 ATOM 117 CD GLU C 421 17.553 7.102 15.369 1.00 90.48 ATOM 118 OE1 GLU C 421 16.687 6.360 14.859 1.00 88.82 ATOM 119 OE2 GLU C 421 17.590 8.336 15.173 1.00 92.26 ATOM 120 N ALA C 422 19.168 8.569 18.677 1.00 63.94 ATOM 121 CA ALA C 422 18.960 9.955 19.098 1.00 60.92 ATOM 122 C ALA C 422 17.475 10.310 19.097 1.00 60.37 ATOM 123 O ALA C 422 16.738 9.937 18.181 1.00 61.92 ATOM 124 CB ALA C 422 19.739 10.906 18.202 1.00 60.64 ATOM 125 N GLY C 423 17.047 11.028 20.132 1.00 59.66 ATOM 126 CA GLY C 423 15.632 11.324 20.339 1.00 56.12 ATOM 127 C GLY C 423 14.925 10.182 21.046 1.00 50.54 ATOM 128 O GLY C 423 13.709 10.219 21.246 1.00 50.35 ATOM 129 N TYR C 424 15.699 9.166 21.419 1.00 41.83 ATOM 130 CA TYR C 424 15.194 8.008 22.145 1.00 36.48 ATOM 131 C TYR C 424 16.028 7.764 23.396 1.00 36.31 ATOM 132 O TYR C 424 17.195 8.160 23.467 1.00 35.32 ATOM 133 CB TYR C 424 15.213 6.760 21.258 1.00 33.48 ATOM 134 CG TYR C 424 14.187 6.766 20.148 1.00 34.23 ATOM 135 CD1 TYR C 424 12.911 6.244 20.353 1.00 35.07 ATOM 136 CD2 TYR C 424 14.493 7.284 18.890 1.00 34.31 ATOM 137 CE1 TYR C 424 11.966 6.243 19.339 1.00 34.86 ATOM 138 CE2 TYR C 424 13.555 7.288 17.870 1.00 34.12 ATOM 139 CZ TYR C 424 12.294 6.767 18.100 1.00 34.32 ATOM 140 OH TYR C 424 11.360 6.768 17.090 1.00 34.39 ATOM 141 N GLU C 425 15.421 7.105 24.378 1.00 39.48 ATOM 142 CA GLU C 425 16.079 6.814 25.643 1.00 43.18 ATOM 143 C GLU C 425 15.716 5.405 26.094 1.00 44.88 ATOM 144 O GLU C 425 14.547 5.016 26.043 1.00 44.17 ATOM 145 CB GLU C 425 15.646 7.830 26.697 1.00 46.13 ATOM 146 CG GLU C 425 16.771 8.335 27.584 1.00 49.30 ATOM 147 CD GLU C 425 16.363 9.560 28.380 1.00 53.18 ATOM 148 OE1 GLU C 425 15.298 9.523 29.037 1.00 52.39 ATOM 149 OE2 GLU C 425 17.106 10.566 28.344 1.00 55.89 ATOM 150 N LEU C 426 16.719 4.640 26.521 1.00 47.47 ATOM 151 CA LEU C 426 16.492 3.280 27.004 1.00 50.33 ATOM 152 C LEU C 426 15.593 3.275 28.233 1.00 53.37 ATOM 153 O LEU C 426 15.715 4.136 29.106 1.00 51.99 ATOM 154 CB LEU C 426 17.816 2.571 27.307 1.00 51.58 ATOM 155 CG LEU C 426 18.580 1.945 26.136 1.00 53.24 ATOM 156 CD1 LEU C 426 19.986 1.558 26.568 1.00 54.85 ATOM 157 CD2 LEU C 426 17.845 0.739 25.564 1.00 54.07 ATOM 158 N ARG C 427 14.685 2.305 28.283 1.00 61.28 ATOM 159 CA ARG C 427 13.748 2.169 29.394 1.00 68.01 ATOM 160 C ARG C 427 14.394 1.464 30.593 1.00 73.42 ATOM 161 O ARG C 427 15.531 0.992 30.494 1.00 71.59 ATOM 162 CB ARG C 427 12.486 1.428 28.939 1.00 69.25 ATOM 163 CG ARG C 427 11.471 2.301 28.217 1.00 70.10 ATOM 164 CD ARG C 427 10.196 1.520 27.944 1.00 70.58 ATOM 165 NE ARG C 427 9.371 2.150 26.917 1.00 72.91 ATOM 166 CZ ARG C 427 8.376 2.997 27.165 1.00 72.28 ATOM 167 NH1 ARG C 427 7.682 3.515 26.161 1.00 69.62 ATOM 168 NH2 ARG C 427 8.072 3.328 28.413 1.00 69.70 ATOM 169 N PRO C 428 13.674 1.400 31.732 1.00 77.72 ATOM 170 CA PRO C 428 14.156 0.682 32.917 1.00 79.13 ATOM 171 C PRO C 428 14.526 -0.771 32.624 1.00 79.15 ATOM 172 O PRO C 428 15.396 -1.329 33.296 1.00 80.23 ATOM 173 CB PRO C 428 12.956 0.732 33.864 1.00 79.37 ATOM 174 CG PRO C 428 12.257 1.992 33.501 1.00 79.41 ATOM 175 CD PRO C 428 12.435 2.151 32.018 1.00 78.11 ATOM 176 N ASP C 429 13.873 -1.368 31.629 1.00 76.95 ATOM 177 CA ASP C 429 14.131 -2.759 31.255 1.00 76.18 ATOM 178 C ASP C 429 15.466 -2.971 30.529 1.00 82.79 ATOM 179 O ASP C 429 15.846 -4.113 30.253 1.00 85.81 ATOM 180 CB ASP C 429 12.957 -3.349 30.453 1.00 72.11 ATOM 181 CG ASP C 429 12.669 -2.593 29.161 1.00 69.29 ATOM 182 OD1 ASP C 429 13.459 -1.706 28.771 1.00 70.04 ATOM 183 OD2 ASP C 429 11.636 -2.900 28.529 1.00 64.27 ATOM 184 N ARG C 430 16.160 -1.872 30.217 1.00 89.02 ATOM 185 CA ARG C 430 17.486 -1.906 29.576 1.00 98.40 ATOM 186 C ARG C 430 17.405 -2.392 28.130 1.00 94.45 ATOM 187 O ARG C 430 18.410 -2.420 27.414 1.00 95.63 ATOM 188 CB ARG C 430 18.459 -2.803 30.368 1.00123.08 ATOM 189 CG ARG C 430 18.636 -2.460 31.848 1.00137.45 ATOM 190 CD ARG C 430 18.806 -3.723 32.692 1.00121.06 ATOM 191 NE ARG C 430 19.380 -3.449 34.011 1.00115.26 ATOM 192 CZ ARG C 430 19.432 -4.324 35.015 1.00112.87 ATOM 193 NH1 ARG C 430 18.937 -5.548 34.872 1.00113.60 ATOM 194 NH2 ARG C 430 19.980 -3.971 36.171 1.00111.42 ATOM 195 N ARG C 431 16.200 -2.770 27.715 1.00 93.14 ATOM 196 CA ARG C 431 15.962 -3.365 26.408 1.00 90.51 ATOM 197 C ARG C 431 15.205 -2.405 25.495 1.00 79.44 ATOM 198 O ARG C 431 15.647 -2.109 24.383 1.00 74.57 ATOM 199 CB ARG C 431 15.161 -4.662 26.573 1.00 95.59 ATOM 200 CG ARG C 431 15.899 -5.796 27.272 1.00100.43 ATOM 201 CD ARG C 431 16.740 -6.609 26.294 1.00103.60 ATOM 202 NE ARG C 431 17.015 -7.958 26.793 1.00103.93 ATOM 203 CZ ARG C 431 17.576 -8.931 26.078 1.00102.91 ATOM 204 NH1 ARG C 431 17.933 -8.722 24.815 1.00103.30 ATOM 205 NH2 ARG C 431 17.781 -10.120 26.628 1.00102.11 ATOM 206 N SER C 432 14.067 -1.921 25.989 1.00 63.65 ATOM 207 CA SER C 432 13.166 -1.065 25.223 1.00 47.99 ATOM 208 C SER C 432 13.686 0.361 25.067 1.00 50.68 ATOM 209 O SER C 432 14.432 0.858 25.912 1.00 53.16 ATOM 210 CB SER C 432 11.778 -1.051 25.869 1.00 30.41 ATOM 211 OG SER C 432 10.882 -0.219 25.153 1.00 21.15 ATOM 212 N CYS C 433 13.283 1.007 23.975 1.00 50.03 ATOM 213 CA CYS C 433 13.624 2.402 23.709 1.00 52.20 ATOM 214 C CYS C 433 12.371 3.282 23.768 1.00 50.43 ATOM 215 O CYS C 433 11.376 3.008 23.092 1.00 50.98 ATOM 216 CB CYS C 433 14.330 2.542 22.350 1.00 56.20 ATOM 217 SG CYS C 433 16.135 2.308 22.364 1.00 69.18 ATOM 218 N LYS C 434 12.428 4.330 24.589 1.00 50.24 ATOM 219 CA LYS C 434 11.325 5.281 24.743 1.00 48.92 ATOM 220 C LYS C 434 11.686 6.610 24.088 1.00 45.71 ATOM 221 O LYS C 434 12.797 7.111 24.263 1.00 45.34 ATOM 222 CB LYS C 434 11.002 5.501 26.223 1.00 51.41 ATOM 223 CG LYS C 434 9.707 6.260 26.477 1.00 52.97 ATOM 224 CD LYS C 434 9.784 7.064 27.765 1.00 55.53 ATOM 225 CE LYS C 434 8.404 7.475 28.252 1.00 58.94 ATOM 226 NZ LYS C 434 7.719 6.367 28.973 1.00 59.19 ATOM 227 N ALA C 435 10.742 7.180 23.345 1.00 40.04 ATOM 228 CA ALA C 435 10.989 8.416 22.606 1.00 38.56 ATOM 229 C ALA C 435 10.921 9.660 23.483 1.00 41.15 ATOM 230 O ALA C 435 9.944 9.875 24.206 1.00 41.83 ATOM 231 CB ALA C 435 10.023 8.538 21.438 1.00 38.32 ATOM 232 N LEU C 436 11.972 10.473 23.406 1.00 49.34 ATOM 233 CA LEU C 436 12.006 11.760 24.086 1.00 52.76 ATOM 234 C LEU C 436 11.087 12.730 23.359 1.00 54.21 ATOM 235 O LEU C 436 11.143 12.851 22.133 1.00 54.57 ATOM 236 CB LEU C 436 13.433 12.315 24.128 1.00 54.49 ATOM 237 CG LEU C 436 14.510 11.488 24.839 1.00 56.92 ATOM 238 CD1 LEU C 436 15.884 12.099 24.607 1.00 57.49 ATOM 239 CD2 LEU C 436 14.218 11.374 26.329 1.00 55.81 ATOM 240 N GLY C 437 10.242 13.412 24.123 1.00 51.33 ATOM 241 CA GLY C 437 9.275 14.354 23.575 1.00 48.37 ATOM 242 C GLY C 437 7.932 14.194 24.262 1.00 46.38 ATOM 243 O GLY C 437 7.861 13.630 25.357 1.00 46.81 ATOM 244 N PRO C 438 6.855 14.691 23.628 1.00 44.15 ATOM 245 CA PRO C 438 5.510 14.499 24.173 1.00 43.00 ATOM 246 C PRO C 438 5.068 13.040 24.080 1.00 43.09 ATOM 247 O PRO C 438 5.766 12.216 23.480 1.00 43.24 ATOM 248 CB PRO C 438 4.637 15.376 23.269 1.00 42.83 ATOM 249 CG PRO C 438 5.401 15.489 21.993 1.00 42.79 ATOM 250 CD PRO C 438 6.844 15.506 22.400 1.00 43.43 TER