HEADER PROTEIN BINDING 18-DEC-11 3V64 TITLE Crystal Structure of agrin and LRP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: agrin; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: beta 1 propeller (unp residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.85 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN D 16 REMARK 465 SER D 17 REMARK 465 GLU D 18 REMARK 465 GLY D 19 REMARK 465 ALA D 20 DBREF 3V64 D 396 737 UNP Q9QYP1 LRP4_RAT 396 737 SEQRES 1 D 33 TYR CYS SER GLN GLY CYS THR ASN SER GLU GLY ALA PHE SEQRES 2 D 33 GLN CYS TRP CYS GLU ALA GLY TYR GLU LEU ARG PRO ASP SEQRES 3 D 33 ARG ARG SER CYS LYS ALA LEU ATOM 1 N TYR D 404 -42.234 34.520 -62.938 1.00115.98 ATOM 2 CA TYR D 404 -43.214 35.627 -62.769 1.00115.94 ATOM 3 C TYR D 404 -42.582 36.951 -63.179 1.00112.61 ATOM 4 O TYR D 404 -42.580 37.915 -62.405 1.00113.15 ATOM 5 CB TYR D 404 -43.689 35.693 -61.317 1.00116.73 ATOM 6 CG TYR D 404 -45.124 36.130 -61.180 1.00117.75 ATOM 7 CD1 TYR D 404 -45.448 37.432 -60.804 1.00118.68 ATOM 8 CD2 TYR D 404 -46.162 35.239 -61.436 1.00117.43 ATOM 9 CE1 TYR D 404 -46.769 37.830 -60.681 1.00119.77 ATOM 10 CE2 TYR D 404 -47.483 35.626 -61.318 1.00118.56 ATOM 11 CZ TYR D 404 -47.782 36.921 -60.941 1.00120.19 ATOM 12 OH TYR D 404 -49.096 37.310 -60.822 1.00121.98 ATOM 13 N CYS D 405 -42.046 36.986 -64.399 1.00107.60 ATOM 14 CA CYS D 405 -41.244 38.111 -64.878 1.00103.68 ATOM 15 C CYS D 405 -39.972 38.199 -64.024 1.00 99.36 ATOM 16 O CYS D 405 -39.346 39.256 -63.901 1.00 97.28 ATOM 17 CB CYS D 405 -42.064 39.407 -64.862 1.00107.37 ATOM 18 SG CYS D 405 -41.161 40.925 -65.238 1.00112.09 ATOM 19 N SER D 406 -39.608 37.052 -63.449 1.00 88.09 ATOM 20 CA SER D 406 -38.453 36.907 -62.563 1.00 83.13 ATOM 21 C SER D 406 -38.457 37.900 -61.402 1.00 85.79 ATOM 22 O SER D 406 -39.335 37.845 -60.537 1.00 87.61 ATOM 23 CB SER D 406 -37.138 36.957 -63.346 1.00 79.48 ATOM 24 OG SER D 406 -37.008 35.818 -64.177 1.00 78.03 ATOM 25 N GLN D 407 -37.477 38.802 -61.394 1.00 95.41 ATOM 26 CA GLN D 407 -37.262 39.716 -60.274 1.00 99.88 ATOM 27 C GLN D 407 -38.423 40.681 -60.034 1.00101.90 ATOM 28 O GLN D 407 -38.974 40.723 -58.932 1.00104.25 ATOM 29 CB GLN D 407 -35.953 40.493 -60.461 1.00 99.11 ATOM 30 CG GLN D 407 -34.729 39.606 -60.651 1.00 96.54 ATOM 31 CD GLN D 407 -33.426 40.384 -60.658 1.00 95.29 ATOM 32 OE1 GLN D 407 -33.410 41.602 -60.846 1.00 97.32 ATOM 33 NE2 GLN D 407 -32.320 39.677 -60.455 1.00 93.11 ATOM 34 N GLY D 408 -38.802 41.442 -61.058 1.00 97.78 ATOM 35 CA GLY D 408 -39.886 42.410 -60.913 1.00 99.66 ATOM 36 C GLY D 408 -40.391 43.038 -62.196 1.00107.23 ATOM 37 O GLY D 408 -39.651 43.173 -63.171 1.00106.94 ATOM 38 N CYS D 409 -41.662 43.430 -62.176 1.00124.62 ATOM 39 CA CYS D 409 -42.294 44.137 -63.285 1.00133.68 ATOM 40 C CYS D 409 -43.178 45.263 -62.760 1.00136.74 ATOM 41 O CYS D 409 -44.162 45.016 -62.057 1.00137.57 ATOM 42 CB CYS D 409 -43.115 43.177 -64.154 1.00140.18 ATOM 43 SG CYS D 409 -44.290 42.130 -63.261 1.00162.85 ATOM 44 N THR D 410 -42.819 46.499 -63.096 1.00135.49 ATOM 45 CA THR D 410 -43.571 47.668 -62.641 1.00134.73 ATOM 46 C THR D 410 -44.426 48.249 -63.763 1.00134.48 ATOM 47 O THR D 410 -45.650 48.119 -63.754 1.00134.18 ATOM 48 CB THR D 410 -42.646 48.769 -62.081 1.00134.22 ATOM 49 OG1 THR D 410 -41.690 49.152 -63.078 1.00134.69 ATOM 50 CG2 THR D 410 -41.913 48.284 -60.835 1.00134.15 ATOM 51 N PHE D 416 -47.083 46.236 -69.530 1.00154.47 ATOM 52 CA PHE D 416 -46.063 46.241 -68.486 1.00153.47 ATOM 53 C PHE D 416 -44.692 45.839 -69.028 1.00152.85 ATOM 54 O PHE D 416 -44.579 45.319 -70.141 1.00152.99 ATOM 55 CB PHE D 416 -46.468 45.305 -67.346 1.00 20.00 ATOM 56 CG PHE D 416 -46.672 43.880 -67.775 1.00 20.00 ATOM 57 CD1 PHE D 416 -45.612 42.990 -67.797 1.00 20.00 ATOM 58 CD2 PHE D 416 -47.926 43.431 -68.155 1.00 20.00 ATOM 59 CE1 PHE D 416 -45.798 41.678 -68.189 1.00 20.00 ATOM 60 CE2 PHE D 416 -48.117 42.121 -68.550 1.00 20.00 ATOM 61 CZ PHE D 416 -47.052 41.242 -68.566 1.00 20.00 ATOM 62 N GLN D 417 -43.656 46.090 -68.230 1.00141.19 ATOM 63 CA GLN D 417 -42.286 45.742 -68.595 1.00136.98 ATOM 64 C GLN D 417 -41.599 44.992 -67.459 1.00136.50 ATOM 65 O GLN D 417 -41.987 45.124 -66.299 1.00136.67 ATOM 66 CB GLN D 417 -41.488 47.000 -68.967 1.00135.58 ATOM 67 CG GLN D 417 -40.906 47.779 -67.790 1.00133.70 ATOM 68 CD GLN D 417 -41.936 48.600 -67.030 1.00131.78 ATOM 69 OE1 GLN D 417 -43.084 48.738 -67.454 1.00133.33 ATOM 70 NE2 GLN D 417 -41.521 49.158 -65.898 1.00131.82 ATOM 71 N CYS D 418 -40.578 44.214 -67.803 1.00134.67 ATOM 72 CA CYS D 418 -39.809 43.469 -66.815 1.00132.79 ATOM 73 C CYS D 418 -38.561 44.233 -66.397 1.00131.58 ATOM 74 O CYS D 418 -37.861 44.803 -67.236 1.00129.09 ATOM 75 CB CYS D 418 -39.438 42.092 -67.358 1.00125.66 ATOM 76 SG CYS D 418 -40.770 40.877 -67.225 1.00111.66 ATOM 77 N TRP D 419 -38.291 44.243 -65.096 1.00133.50 ATOM 78 CA TRP D 419 -37.180 45.016 -64.558 1.00105.36 ATOM 79 C TRP D 419 -36.119 44.142 -63.938 1.00 82.43 ATOM 80 O TRP D 419 -36.401 43.338 -63.045 1.00 85.65 ATOM 81 CB TRP D 419 -37.699 46.063 -63.573 1.00 32.22 ATOM 82 CG TRP D 419 -36.621 46.841 -62.864 1.00 18.28 ATOM 83 CD1 TRP D 419 -35.513 47.463 -63.427 1.00 19.62 ATOM 84 CD2 TRP D 419 -36.529 47.118 -61.430 1.00 16.27 ATOM 85 NE1 TRP D 419 -34.754 48.076 -62.461 1.00 17.54 ATOM 86 CE2 TRP D 419 -35.313 47.907 -61.240 1.00 16.09 ATOM 87 CE3 TRP D 419 -37.306 46.797 -60.320 1.00 16.03 ATOM 88 CZ2 TRP D 419 -34.909 48.348 -59.987 1.00 16.04 ATOM 89 CZ3 TRP D 419 -36.889 47.245 -59.062 1.00 15.81 ATOM 90 CH2 TRP D 419 -35.717 48.003 -58.903 1.00 15.83 ATOM 91 N CYS D 420 -34.891 44.287 -64.436 1.00 80.96 ATOM 92 CA CYS D 420 -33.721 43.583 -63.903 1.00 92.55 ATOM 93 C CYS D 420 -32.950 44.489 -62.946 1.00 93.33 ATOM 94 O CYS D 420 -33.162 45.703 -62.914 1.00 67.71 ATOM 95 CB CYS D 420 -32.779 43.147 -65.033 1.00 98.80 ATOM 96 SG CYS D 420 -32.930 41.464 -65.709 1.00105.95 ATOM 97 N GLU D 421 -32.050 43.889 -62.173 1.00 97.15 ATOM 98 CA GLU D 421 -31.183 44.640 -61.273 1.00 97.75 ATOM 99 C GLU D 421 -29.720 44.476 -61.683 1.00 94.53 ATOM 100 O GLU D 421 -29.395 43.631 -62.516 1.00 91.09 ATOM 101 CB GLU D 421 -31.399 44.200 -59.823 1.00100.66 ATOM 102 CG GLU D 421 -30.946 45.229 -58.797 1.00103.60 ATOM 103 CD GLU D 421 -31.425 44.927 -57.390 1.00107.38 ATOM 104 OE1 GLU D 421 -32.318 44.069 -57.221 1.00108.54 ATOM 105 OE2 GLU D 421 -30.908 45.560 -56.446 1.00107.31 ATOM 106 N ALA D 422 -28.850 45.302 -61.106 1.00 90.48 ATOM 107 CA ALA D 422 -27.423 45.288 -61.420 1.00 86.74 ATOM 108 C ALA D 422 -26.789 43.928 -61.152 1.00 84.17 ATOM 109 O ALA D 422 -27.119 43.255 -60.172 1.00 85.21 ATOM 110 CB ALA D 422 -26.699 46.373 -60.636 1.00 86.26 ATOM 111 N GLY D 423 -25.873 43.538 -62.033 1.00 82.03 ATOM 112 CA GLY D 423 -25.278 42.209 -62.002 1.00 77.69 ATOM 113 C GLY D 423 -26.152 41.214 -62.740 1.00 74.24 ATOM 114 O GLY D 423 -25.835 40.026 -62.804 1.00 75.74 ATOM 115 N TYR D 424 -27.260 41.708 -63.289 1.00 68.94 ATOM 116 CA TYR D 424 -28.201 40.888 -64.043 1.00 68.09 ATOM 117 C TYR D 424 -28.621 41.593 -65.326 1.00 71.60 ATOM 118 O TYR D 424 -28.838 42.807 -65.339 1.00 71.11 ATOM 119 CB TYR D 424 -29.442 40.568 -63.206 1.00 66.37 ATOM 120 CG TYR D 424 -29.169 39.777 -61.947 1.00 64.14 ATOM 121 CD1 TYR D 424 -29.248 38.386 -61.945 1.00 62.15 ATOM 122 CD2 TYR D 424 -28.843 40.421 -60.754 1.00 63.81 ATOM 123 CE1 TYR D 424 -29.001 37.657 -60.792 1.00 60.82 ATOM 124 CE2 TYR D 424 -28.592 39.701 -59.598 1.00 61.91 ATOM 125 CZ TYR D 424 -28.674 38.321 -59.621 1.00 61.24 ATOM 126 OH TYR D 424 -28.428 37.603 -58.474 1.00 61.57 ATOM 127 N GLU D 425 -28.733 40.821 -66.402 1.00 87.84 ATOM 128 CA GLU D 425 -29.185 41.344 -67.684 1.00 99.05 ATOM 129 C GLU D 425 -30.456 40.630 -68.123 1.00101.46 ATOM 130 O GLU D 425 -30.549 39.403 -68.035 1.00101.28 ATOM 131 CB GLU D 425 -28.090 41.192 -68.745 1.00107.72 ATOM 132 CG GLU D 425 -28.410 41.855 -70.077 1.00113.66 ATOM 133 CD GLU D 425 -27.181 42.410 -70.773 1.00117.69 ATOM 134 OE1 GLU D 425 -26.099 41.787 -70.686 1.00117.54 ATOM 135 OE2 GLU D 425 -27.298 43.475 -71.415 1.00117.60 ATOM 136 N LEU D 426 -31.435 41.408 -68.582 1.00 93.61 ATOM 137 CA LEU D 426 -32.682 40.855 -69.101 1.00 89.98 ATOM 138 C LEU D 426 -32.430 39.948 -70.294 1.00 91.55 ATOM 139 O LEU D 426 -31.746 40.330 -71.246 1.00 91.99 ATOM 140 CB LEU D 426 -33.666 41.963 -69.487 1.00 89.31 ATOM 141 CG LEU D 426 -34.838 42.251 -68.545 1.00 89.84 ATOM 142 CD1 LEU D 426 -35.774 43.269 -69.174 1.00 91.44 ATOM 143 CD2 LEU D 426 -35.594 40.980 -68.179 1.00 92.94 ATOM 144 N ARG D 427 -32.980 38.741 -70.226 1.00 95.17 ATOM 145 CA ARG D 427 -32.861 37.779 -71.313 1.00 99.06 ATOM 146 C ARG D 427 -33.988 37.981 -72.327 1.00103.69 ATOM 147 O ARG D 427 -35.029 38.534 -71.981 1.00102.66 ATOM 148 CB ARG D 427 -32.833 36.350 -70.762 1.00 97.55 ATOM 149 CG ARG D 427 -31.531 36.026 -70.047 1.00 95.55 ATOM 150 CD ARG D 427 -31.300 34.531 -69.907 1.00 94.60 ATOM 151 NE ARG D 427 -31.863 33.994 -68.671 1.00 93.76 ATOM 152 CZ ARG D 427 -31.386 32.934 -68.024 1.00 95.16 ATOM 153 NH1 ARG D 427 -30.322 32.285 -68.484 1.00 93.55 ATOM 154 NH2 ARG D 427 -31.971 32.523 -66.908 1.00 94.96 ATOM 155 N PRO D 428 -33.779 37.540 -73.584 1.00112.19 ATOM 156 CA PRO D 428 -34.722 37.779 -74.687 1.00114.40 ATOM 157 C PRO D 428 -36.161 37.353 -74.399 1.00110.53 ATOM 158 O PRO D 428 -37.092 37.903 -74.994 1.00110.21 ATOM 159 CB PRO D 428 -34.141 36.954 -75.846 1.00116.81 ATOM 160 CG PRO D 428 -33.102 36.070 -75.239 1.00118.00 ATOM 161 CD PRO D 428 -32.583 36.820 -74.054 1.00115.32 ATOM 162 N ASP D 429 -36.335 36.383 -73.502 1.00 98.65 ATOM 163 CA ASP D 429 -37.663 35.989 -73.029 1.00 94.23 ATOM 164 C ASP D 429 -38.315 37.135 -72.251 1.00 96.78 ATOM 165 O ASP D 429 -39.505 37.087 -71.925 1.00 97.54 ATOM 166 CB ASP D 429 -37.590 34.707 -72.188 1.00 91.51 ATOM 167 CG ASP D 429 -36.628 34.819 -71.018 1.00 90.90 ATOM 168 OD1 ASP D 429 -36.900 35.611 -70.091 1.00 88.62 ATOM 169 OD2 ASP D 429 -35.607 34.101 -71.018 1.00 90.76 ATOM 170 N ARG D 430 -37.502 38.151 -71.950 1.00103.10 ATOM 171 CA ARG D 430 -37.931 39.419 -71.343 1.00106.78 ATOM 172 C ARG D 430 -38.285 39.306 -69.867 1.00104.42 ATOM 173 O ARG D 430 -38.562 40.310 -69.219 1.00106.09 ATOM 174 CB ARG D 430 -39.089 40.059 -72.121 1.00107.83 ATOM 175 CG ARG D 430 -38.720 40.577 -73.502 1.00110.30 ATOM 176 CD ARG D 430 -39.815 41.489 -74.033 1.00111.23 ATOM 177 NE ARG D 430 -40.173 41.167 -75.412 1.00110.58 ATOM 178 CZ ARG D 430 -39.825 41.886 -76.477 1.00111.36 ATOM 179 NH1 ARG D 430 -39.102 42.991 -76.340 1.00112.85 ATOM 180 NH2 ARG D 430 -40.206 41.498 -77.686 1.00111.23 ATOM 181 N ARG D 431 -38.266 38.086 -69.345 1.00 96.26 ATOM 182 CA ARG D 431 -38.591 37.839 -67.949 1.00 90.92 ATOM 183 C ARG D 431 -37.328 37.551 -67.154 1.00 80.66 ATOM 184 O ARG D 431 -37.078 38.169 -66.119 1.00 76.48 ATOM 185 CB ARG D 431 -39.567 36.666 -67.831 1.00 94.99 ATOM 186 CG ARG D 431 -40.907 36.906 -68.507 1.00 98.62 ATOM 187 CD ARG D 431 -41.995 36.057 -67.875 1.00100.44 ATOM 188 NE ARG D 431 -43.172 36.866 -67.569 1.00101.95 ATOM 189 CZ ARG D 431 -44.120 36.526 -66.700 1.00101.36 ATOM 190 NH1 ARG D 431 -44.050 35.378 -66.039 1.00101.01 ATOM 191 NH2 ARG D 431 -45.146 37.339 -66.493 1.00101.34 ATOM 192 N SER D 432 -36.526 36.625 -67.672 1.00 78.89 ATOM 193 CA SER D 432 -35.353 36.111 -66.974 1.00 67.61 ATOM 194 C SER D 432 -34.198 37.092 -66.878 1.00 69.74 ATOM 195 O SER D 432 -33.858 37.771 -67.848 1.00 63.72 ATOM 196 CB SER D 432 -34.871 34.821 -67.640 1.00 31.45 ATOM 197 OG SER D 432 -35.849 33.801 -67.543 1.00 22.64 ATOM 198 N CYS D 433 -33.605 37.157 -65.690 1.00 65.87 ATOM 199 CA CYS D 433 -32.390 37.923 -65.472 1.00 68.31 ATOM 200 C CYS D 433 -31.217 36.950 -65.353 1.00 69.80 ATOM 201 O CYS D 433 -31.101 36.224 -64.362 1.00 69.19 ATOM 202 CB CYS D 433 -32.499 38.783 -64.201 1.00 72.08 ATOM 203 SG CYS D 433 -33.623 40.213 -64.243 1.00 87.83 ATOM 204 N LYS D 434 -30.362 36.925 -66.374 1.00 73.32 ATOM 205 CA LYS D 434 -29.137 36.130 -66.328 1.00 75.34 ATOM 206 C LYS D 434 -28.076 36.920 -65.577 1.00 75.38 ATOM 207 O LYS D 434 -27.977 38.139 -65.734 1.00 74.74 ATOM 208 CB LYS D 434 -28.648 35.783 -67.736 1.00 78.51 ATOM 209 CG LYS D 434 -27.766 34.544 -67.797 1.00 79.56 ATOM 210 CD LYS D 434 -27.507 34.106 -69.230 1.00 81.37 ATOM 211 CE LYS D 434 -26.858 32.731 -69.278 1.00 81.82 ATOM 212 NZ LYS D 434 -26.617 32.274 -70.675 1.00 80.47 ATOM 213 N ALA D 435 -27.286 36.225 -64.766 1.00 76.86 ATOM 214 CA ALA D 435 -26.281 36.879 -63.936 1.00 78.06 ATOM 215 C ALA D 435 -25.044 37.297 -64.723 1.00 80.97 ATOM 216 O ALA D 435 -24.480 36.508 -65.484 1.00 80.99 ATOM 217 CB ALA D 435 -25.889 35.981 -62.778 1.00 73.46 ATOM 218 N LEU D 436 -24.638 38.550 -64.529 1.00 85.28 ATOM 219 CA LEU D 436 -23.411 39.080 -65.115 1.00 88.02 ATOM 220 C LEU D 436 -22.187 38.461 -64.455 1.00 86.96 ATOM 221 O LEU D 436 -22.230 38.071 -63.286 1.00 88.10 ATOM 222 CB LEU D 436 -23.353 40.607 -64.974 1.00 88.30 ATOM 223 CG LEU D 436 -23.787 41.522 -66.129 1.00 89.39 ATOM 224 CD1 LEU D 436 -22.910 41.338 -67.362 1.00 90.02 ATOM 225 CD2 LEU D 436 -25.259 41.364 -66.479 1.00 85.68 TER