HEADER PROTEIN BINDING 31-DEC-69 3V65 TITLE Crystal structure of agrin and LRP4 complex COMPND MOL_ID: 2; COMPND 2 MOLECULE: Low-density lipoprotein receptor-related protein 4; COMPND 3 CHAIN: B, D; COMPND 4 FRAGMENT: LRP4 beta-1 (unp residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 59 REMARK 465 SER B 60 REMARK 465 GLU B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 DBREF 3V65 B 353 737 UNP Q9QYP1 LRP4_RAT 353 737 SEQRES 1 B 35 TYR CYS SER GLN GLY CYS THR ASN SER GLU GLY ALA PHE SEQRES 2 B 35 GLN CYS TRP CYS GLU ALA GLY TYR GLU LEU ARG PRO ASP SEQRES 3 B 35 ARG ARG SER CYS LYS ALA LEU GLY PRO ATOM 1 N TYR B 404 -22.929 2.392 6.275 1.00116.62 ATOM 2 CA TYR B 404 -23.314 1.000 6.680 1.00119.67 ATOM 3 C TYR B 404 -23.015 0.018 5.548 1.00116.40 ATOM 4 O TYR B 404 -23.376 -1.162 5.606 1.00109.36 ATOM 5 CB TYR B 404 -24.784 0.967 7.124 1.00129.94 ATOM 6 CG TYR B 404 -25.067 1.997 8.202 1.00134.80 ATOM 7 CD1 TYR B 404 -25.298 1.611 9.524 1.00134.80 ATOM 8 CD2 TYR B 404 -25.071 3.367 7.903 1.00133.38 ATOM 9 CE1 TYR B 404 -25.543 2.557 10.511 1.00133.80 ATOM 10 CE2 TYR B 404 -25.309 4.318 8.882 1.00132.92 ATOM 11 CZ TYR B 404 -25.547 3.908 10.182 1.00131.74 ATOM 12 OH TYR B 404 -25.789 4.851 11.155 1.00131.51 ATOM 13 N CYS B 405 -22.335 0.552 4.528 1.00122.93 ATOM 14 CA CYS B 405 -21.738 -0.196 3.408 1.00128.32 ATOM 15 C CYS B 405 -20.300 0.323 3.125 1.00121.24 ATOM 16 O CYS B 405 -19.778 0.196 2.009 1.00131.59 ATOM 17 CB CYS B 405 -22.654 -0.121 2.163 1.00130.43 ATOM 18 SG CYS B 405 -22.029 -0.736 0.567 1.00122.65 ATOM 19 N SER B 406 -19.675 0.903 4.152 1.00106.94 ATOM 20 CA SER B 406 -18.267 1.336 4.131 1.00 88.94 ATOM 21 C SER B 406 -17.955 2.506 3.209 1.00 85.88 ATOM 22 O SER B 406 -17.497 3.551 3.674 1.00 84.08 ATOM 23 CB SER B 406 -17.313 0.172 3.834 1.00 87.64 ATOM 24 OG SER B 406 -17.389 -0.820 4.839 1.00 87.57 ATOM 25 N GLN B 407 -18.175 2.333 1.910 1.00 80.39 ATOM 26 CA GLN B 407 -17.810 3.376 0.954 1.00 78.28 ATOM 27 C GLN B 407 -18.851 3.638 -0.136 1.00 79.18 ATOM 28 O GLN B 407 -19.103 4.795 -0.485 1.00 80.81 ATOM 29 CB GLN B 407 -16.418 3.116 0.356 1.00 73.32 ATOM 30 CG GLN B 407 -15.271 3.765 1.132 1.00 70.60 ATOM 31 CD GLN B 407 -13.893 3.271 0.704 1.00 62.81 ATOM 32 OE1 GLN B 407 -13.743 2.183 0.154 1.00 64.39 ATOM 33 NE2 GLN B 407 -12.882 4.076 0.963 1.00 60.82 ATOM 34 N GLY B 408 -19.454 2.578 -0.668 1.00 77.73 ATOM 35 CA GLY B 408 -20.456 2.743 -1.711 1.00 78.52 ATOM 36 C GLY B 408 -21.389 1.567 -1.868 1.00 77.88 ATOM 37 O GLY B 408 -20.967 0.416 -1.772 1.00 79.61 ATOM 38 N CYS B 409 -22.662 1.872 -2.096 1.00 83.42 ATOM 39 CA CYS B 409 -23.661 0.871 -2.442 1.00 88.95 ATOM 40 C CYS B 409 -24.368 1.290 -3.726 1.00 94.73 ATOM 41 O CYS B 409 -24.093 2.367 -4.269 1.00 93.99 ATOM 42 CB CYS B 409 -24.680 0.690 -1.302 1.00 94.07 ATOM 43 SG CYS B 409 -26.172 1.728 -1.368 1.00 94.80 ATOM 44 N THR B 410 -25.249 0.413 -4.215 1.00 97.83 ATOM 45 CA THR B 410 -26.296 0.732 -5.201 1.00100.11 ATOM 46 C THR B 410 -27.261 -0.448 -5.272 1.00100.51 ATOM 47 O THR B 410 -28.411 -0.353 -4.844 1.00 98.79 ATOM 48 CB THR B 410 -25.768 1.041 -6.628 1.00101.33 ATOM 49 OG1 THR B 410 -24.853 2.147 -6.598 1.00100.90 ATOM 50 CG2 THR B 410 -26.927 1.390 -7.563 1.00101.91 ATOM 51 N PHE B 416 -27.995 -3.147 -2.287 1.00164.66 ATOM 52 CA PHE B 416 -27.778 -4.581 -2.148 1.00122.67 ATOM 53 C PHE B 416 -26.310 -4.950 -2.333 1.00120.96 ATOM 54 O PHE B 416 -25.799 -5.849 -1.660 1.00133.84 ATOM 55 CB PHE B 416 -28.646 -5.357 -3.142 1.00 36.72 ATOM 56 CG PHE B 416 -30.123 -5.201 -2.911 1.00 21.11 ATOM 57 CD1 PHE B 416 -30.781 -5.987 -1.974 1.00 21.24 ATOM 58 CD2 PHE B 416 -30.857 -4.269 -3.632 1.00 20.94 ATOM 59 CE1 PHE B 416 -32.143 -5.846 -1.760 1.00 21.28 ATOM 60 CE2 PHE B 416 -32.218 -4.123 -3.423 1.00 21.34 ATOM 61 CZ PHE B 416 -32.862 -4.912 -2.486 1.00 21.28 ATOM 62 N GLN B 417 -25.629 -4.250 -3.235 1.00117.27 ATOM 63 CA GLN B 417 -24.218 -4.517 -3.498 1.00130.01 ATOM 64 C GLN B 417 -23.322 -3.363 -3.020 1.00126.70 ATOM 65 O GLN B 417 -23.687 -2.192 -3.106 1.00124.47 ATOM 66 CB GLN B 417 -23.979 -4.861 -4.978 1.00128.72 ATOM 67 CG GLN B 417 -23.403 -3.754 -5.848 1.00127.96 ATOM 68 CD GLN B 417 -24.347 -2.581 -6.034 1.00125.37 ATOM 69 OE1 GLN B 417 -25.506 -2.626 -5.621 1.00120.60 ATOM 70 NE2 GLN B 417 -23.852 -1.520 -6.659 1.00125.57 ATOM 71 N CYS B 418 -22.164 -3.738 -2.483 1.00123.18 ATOM 72 CA CYS B 418 -21.205 -2.783 -1.930 1.00118.87 ATOM 73 C CYS B 418 -19.999 -2.580 -2.837 1.00118.57 ATOM 74 O CYS B 418 -19.723 -3.396 -3.719 1.00119.48 ATOM 75 CB CYS B 418 -20.738 -3.230 -0.541 1.00112.76 ATOM 76 SG CYS B 418 -21.822 -2.738 0.818 1.00114.51 ATOM 77 N TRP B 419 -19.299 -1.473 -2.619 1.00113.99 ATOM 78 CA TRP B 419 -18.165 -1.093 -3.445 1.00111.10 ATOM 79 C TRP B 419 -17.053 -0.462 -2.608 1.00107.92 ATOM 80 O TRP B 419 -17.319 0.264 -1.648 1.00108.23 ATOM 81 CB TRP B 419 -18.605 -0.125 -4.545 1.00 20.00 ATOM 82 CG TRP B 419 -18.713 -0.762 -5.896 1.00 20.00 ATOM 83 CD1 TRP B 419 -19.838 -1.275 -6.476 1.00 20.00 ATOM 84 CD2 TRP B 419 -17.653 -0.955 -6.841 1.00 20.00 ATOM 85 NE1 TRP B 419 -19.543 -1.776 -7.721 1.00 20.00 ATOM 86 CE2 TRP B 419 -18.209 -1.592 -7.970 1.00 20.00 ATOM 87 CE3 TRP B 419 -16.286 -0.657 -6.849 1.00 20.00 ATOM 88 CZ2 TRP B 419 -17.449 -1.932 -9.088 1.00 20.00 ATOM 89 CZ3 TRP B 419 -15.536 -0.995 -7.960 1.00 20.00 ATOM 90 CH2 TRP B 419 -16.118 -1.625 -9.063 1.00 20.00 ATOM 91 N CYS B 420 -15.811 -0.761 -2.982 1.00104.18 ATOM 92 CA CYS B 420 -14.628 -0.104 -2.428 1.00 98.84 ATOM 93 C CYS B 420 -14.138 0.967 -3.400 1.00 91.87 ATOM 94 O CYS B 420 -14.783 1.222 -4.418 1.00 93.09 ATOM 95 CB CYS B 420 -13.517 -1.110 -2.130 1.00101.85 ATOM 96 SG CYS B 420 -13.488 -1.729 -0.427 1.00 99.64 ATOM 97 N GLU B 421 -13.010 1.604 -3.088 1.00 79.48 ATOM 98 CA GLU B 421 -12.556 2.739 -3.880 1.00 74.62 ATOM 99 C GLU B 421 -11.074 3.027 -3.801 1.00 69.50 ATOM 100 O GLU B 421 -10.423 2.704 -2.806 1.00 67.88 ATOM 101 CB GLU B 421 -13.323 3.972 -3.391 1.00 77.25 ATOM 102 CG GLU B 421 -13.442 5.114 -4.379 1.00 79.18 ATOM 103 CD GLU B 421 -13.466 6.466 -3.686 1.00 80.97 ATOM 104 OE1 GLU B 421 -14.534 6.863 -3.169 1.00 81.84 ATOM 105 OE2 GLU B 421 -12.411 7.135 -3.665 1.00 79.86 ATOM 106 N ALA B 422 -10.549 3.643 -4.857 1.00 67.71 ATOM 107 CA ALA B 422 -9.163 4.086 -4.869 1.00 64.33 ATOM 108 C ALA B 422 -8.303 2.927 -4.390 1.00 62.73 ATOM 109 O ALA B 422 -8.451 1.795 -4.859 1.00 64.69 ATOM 110 CB ALA B 422 -8.972 5.320 -4.007 1.00 64.20 ATOM 111 N GLY B 423 -7.426 3.197 -3.425 1.00 60.76 ATOM 112 CA GLY B 423 -6.576 2.165 -2.857 1.00 57.75 ATOM 113 C GLY B 423 -7.181 1.427 -1.676 1.00 55.37 ATOM 114 O GLY B 423 -6.566 1.341 -0.610 1.00 55.57 ATOM 115 N TYR B 424 -8.375 0.875 -1.879 1.00 52.85 ATOM 116 CA TYR B 424 -9.056 0.047 -0.882 1.00 51.47 ATOM 117 C TYR B 424 -9.561 -1.202 -1.582 1.00 52.33 ATOM 118 O TYR B 424 -9.666 -1.231 -2.811 1.00 53.48 ATOM 119 CB TYR B 424 -10.236 0.779 -0.237 1.00 51.53 ATOM 120 CG TYR B 424 -9.856 2.008 0.560 1.00 51.81 ATOM 121 CD1 TYR B 424 -10.443 2.279 1.794 1.00 53.54 ATOM 122 CD2 TYR B 424 -8.912 2.905 0.074 1.00 52.69 ATOM 123 CE1 TYR B 424 -10.092 3.405 2.515 1.00 54.41 ATOM 124 CE2 TYR B 424 -8.554 4.025 0.788 1.00 53.77 ATOM 125 CZ TYR B 424 -9.146 4.274 2.005 1.00 55.58 ATOM 126 OH TYR B 424 -8.786 5.399 2.708 1.00 55.54 ATOM 127 N GLU B 425 -9.837 -2.249 -0.810 1.00 54.90 ATOM 128 CA GLU B 425 -10.283 -3.513 -1.382 1.00 60.14 ATOM 129 C GLU B 425 -11.230 -4.247 -0.440 1.00 59.74 ATOM 130 O GLU B 425 -10.816 -4.658 0.646 1.00 59.90 ATOM 131 CB GLU B 425 -9.060 -4.378 -1.643 1.00 68.01 ATOM 132 CG GLU B 425 -8.887 -4.823 -3.075 1.00 85.23 ATOM 133 CD GLU B 425 -7.482 -5.321 -3.339 1.00100.74 ATOM 134 OE1 GLU B 425 -6.804 -5.743 -2.375 1.00102.80 ATOM 135 OE2 GLU B 425 -7.051 -5.288 -4.510 1.00105.33 ATOM 136 N LEU B 426 -12.479 -4.446 -0.861 1.00 64.45 ATOM 137 CA LEU B 426 -13.491 -5.085 -0.010 1.00 68.87 ATOM 138 C LEU B 426 -12.972 -6.339 0.686 1.00 74.39 ATOM 139 O LEU B 426 -12.461 -7.254 0.036 1.00 75.21 ATOM 140 CB LEU B 426 -14.753 -5.433 -0.807 1.00 72.82 ATOM 141 CG LEU B 426 -15.861 -4.405 -1.074 1.00 78.18 ATOM 142 CD1 LEU B 426 -16.999 -5.087 -1.820 1.00 79.72 ATOM 143 CD2 LEU B 426 -16.385 -3.749 0.198 1.00 79.57 ATOM 144 N ARG B 427 -13.112 -6.374 2.007 1.00 81.41 ATOM 145 CA ARG B 427 -12.647 -7.499 2.808 1.00 83.48 ATOM 146 C ARG B 427 -13.507 -8.720 2.562 1.00 82.05 ATOM 147 O ARG B 427 -14.614 -8.592 2.027 1.00 81.37 ATOM 148 CB ARG B 427 -12.708 -7.153 4.290 1.00 84.85 ATOM 149 CG ARG B 427 -11.669 -6.150 4.729 1.00 84.93 ATOM 150 CD ARG B 427 -11.588 -6.165 6.235 1.00 81.27 ATOM 151 NE ARG B 427 -10.629 -5.189 6.724 1.00 80.28 ATOM 152 CZ ARG B 427 -9.359 -5.479 6.968 1.00 77.65 ATOM 153 NH1 ARG B 427 -8.906 -6.708 6.752 1.00 78.28 ATOM 154 NH2 ARG B 427 -8.543 -4.541 7.415 1.00 76.67 ATOM 155 N PRO B 428 -13.002 -9.910 2.940 1.00 83.72 ATOM 156 CA PRO B 428 -13.866 -11.088 2.994 1.00 85.89 ATOM 157 C PRO B 428 -15.126 -10.838 3.847 1.00 87.95 ATOM 158 O PRO B 428 -15.252 -11.368 4.955 1.00 89.29 ATOM 159 CB PRO B 428 -12.958 -12.156 3.615 1.00 85.88 ATOM 160 CG PRO B 428 -11.587 -11.770 3.169 1.00 84.21 ATOM 161 CD PRO B 428 -11.574 -10.265 3.098 1.00 83.50 ATOM 162 N ASP B 429 -16.031 -10.017 3.311 1.00 88.73 ATOM 163 CA ASP B 429 -17.321 -9.682 3.921 1.00 91.10 ATOM 164 C ASP B 429 -18.136 -8.855 2.934 1.00 91.83 ATOM 165 O ASP B 429 -19.362 -8.786 3.025 1.00 91.99 ATOM 166 CB ASP B 429 -17.143 -8.898 5.231 1.00 93.75 ATOM 167 CG ASP B 429 -17.253 -7.390 5.041 1.00 93.90 ATOM 168 OD1 ASP B 429 -16.706 -6.866 4.045 1.00 94.99 ATOM 169 OD2 ASP B 429 -17.881 -6.726 5.894 1.00 94.07 ATOM 170 N ARG B 430 -17.424 -8.198 2.020 1.00 94.66 ATOM 171 CA ARG B 430 -18.018 -7.404 0.943 1.00 99.25 ATOM 172 C ARG B 430 -18.825 -6.168 1.393 1.00102.51 ATOM 173 O ARG B 430 -19.523 -5.557 0.584 1.00103.02 ATOM 174 CB ARG B 430 -18.818 -8.302 -0.017 1.00 99.91 ATOM 175 CG ARG B 430 -17.945 -9.171 -0.913 1.00100.78 ATOM 176 CD ARG B 430 -18.653 -10.466 -1.273 1.00101.55 ATOM 177 NE ARG B 430 -18.026 -11.119 -2.425 1.00103.78 ATOM 178 CZ ARG B 430 -18.483 -12.227 -3.015 1.00109.68 ATOM 179 NH1 ARG B 430 -19.581 -12.842 -2.567 1.00109.45 ATOM 180 NH2 ARG B 430 -17.843 -12.741 -4.065 1.00109.61 ATOM 181 N ARG B 431 -18.720 -5.808 2.673 1.00 98.40 ATOM 182 CA ARG B 431 -19.180 -4.502 3.168 1.00 94.05 ATOM 183 C ARG B 431 -17.944 -3.658 3.492 1.00 88.85 ATOM 184 O ARG B 431 -17.810 -2.523 3.035 1.00 85.07 ATOM 185 CB ARG B 431 -20.058 -4.656 4.417 1.00 93.89 ATOM 186 CG ARG B 431 -21.285 -5.534 4.232 1.00 95.08 ATOM 187 CD ARG B 431 -21.828 -6.030 5.564 1.00100.61 ATOM 188 NE ARG B 431 -22.654 -7.228 5.395 1.00104.77 ATOM 189 CZ ARG B 431 -23.017 -8.053 6.379 1.00108.00 ATOM 190 NH1 ARG B 431 -22.631 -7.825 7.631 1.00111.94 ATOM 191 NH2 ARG B 431 -23.768 -9.117 6.111 1.00109.20 ATOM 192 N SER B 432 -17.042 -4.264 4.262 1.00 90.01 ATOM 193 CA SER B 432 -15.796 -3.684 4.766 1.00 89.02 ATOM 194 C SER B 432 -14.804 -3.299 3.671 1.00 82.67 ATOM 195 O SER B 432 -14.573 -4.081 2.752 1.00 83.60 ATOM 196 CB SER B 432 -15.124 -4.659 5.735 1.00 20.00 ATOM 197 OG SER B 432 -13.891 -4.143 6.205 1.00 20.00 ATOM 198 N CYS B 433 -14.192 -2.121 3.796 1.00 70.67 ATOM 199 CA CYS B 433 -13.239 -1.632 2.801 1.00 66.33 ATOM 200 C CYS B 433 -11.812 -1.448 3.319 1.00 56.78 ATOM 201 O CYS B 433 -11.464 -0.357 3.748 1.00 56.12 ATOM 202 CB CYS B 433 -13.746 -0.314 2.219 1.00 78.17 ATOM 203 SG CYS B 433 -14.672 -0.498 0.679 1.00 90.93 ATOM 204 N LYS B 434 -10.976 -2.486 3.268 1.00 53.03 ATOM 205 CA LYS B 434 -9.592 -2.355 3.761 1.00 52.92 ATOM 206 C LYS B 434 -8.717 -1.513 2.857 1.00 52.06 ATOM 207 O LYS B 434 -8.784 -1.638 1.646 1.00 53.21 ATOM 208 CB LYS B 434 -8.886 -3.707 3.937 1.00 57.27 ATOM 209 CG LYS B 434 -7.422 -3.532 4.380 1.00 59.35 ATOM 210 CD LYS B 434 -6.562 -4.779 4.234 1.00 62.12 ATOM 211 CE LYS B 434 -5.376 -4.732 5.197 1.00 64.47 ATOM 212 NZ LYS B 434 -5.750 -5.113 6.597 1.00 65.66 ATOM 213 N ALA B 435 -7.861 -0.693 3.455 1.00 51.15 ATOM 214 CA ALA B 435 -6.897 0.075 2.686 1.00 50.89 ATOM 215 C ALA B 435 -5.724 -0.775 2.239 1.00 52.60 ATOM 216 O ALA B 435 -5.230 -1.634 2.969 1.00 52.51 ATOM 217 CB ALA B 435 -6.417 1.289 3.462 1.00 51.41 ATOM 218 N LEU B 436 -5.297 -0.506 1.014 1.00 60.24 ATOM 219 CA LEU B 436 -4.125 -1.127 0.425 1.00 65.84 ATOM 220 C LEU B 436 -2.860 -0.530 1.043 1.00 70.37 ATOM 221 O LEU B 436 -2.939 0.326 1.926 1.00 69.24 ATOM 222 CB LEU B 436 -4.124 -0.925 -1.103 1.00 65.50 ATOM 223 CG LEU B 436 -5.370 -1.222 -1.954 1.00 62.34 ATOM 224 CD1 LEU B 436 -5.026 -1.095 -3.430 1.00 60.96 ATOM 225 CD2 LEU B 436 -5.990 -2.579 -1.658 1.00 62.42 ATOM 226 N GLY B 437 -1.701 -0.997 0.578 1.00 74.30 ATOM 227 CA GLY B 437 -0.400 -0.493 1.030 1.00 75.83 ATOM 228 C GLY B 437 0.054 -1.046 2.373 1.00 74.44 ATOM 229 O GLY B 437 -0.379 -2.130 2.779 1.00 75.88 ATOM 230 N PRO B 438 0.929 -0.299 3.076 1.00 70.82 ATOM 231 CA PRO B 438 1.413 -0.657 4.415 1.00 68.90 ATOM 232 C PRO B 438 0.319 -0.600 5.488 1.00 67.22 ATOM 233 O PRO B 438 -0.813 -0.206 5.205 1.00 65.00 ATOM 234 CB PRO B 438 2.484 0.407 4.697 1.00 68.82 ATOM 235 CG PRO B 438 2.112 1.566 3.837 1.00 68.87 ATOM 236 CD PRO B 438 1.533 0.957 2.592 1.00 69.29 TER