HEADER PROTEIN BINDING/METAL BINDING PROTEIN 09-JUL-12 3VUY TITLE Crystal structure of A20 ZF7 in complex with linear tetraubiquitin COMPND MOL_ID: 2; COMPND 2 MOLECULE: Tumor necrosis factor alpha-induced protein 3; COMPND 3 CHAIN: D, F, E; COMPND 4 FRAGMENT: A20-type 7 Zinc finger domain, residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.98 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 1 DBREF 3VUY D 757 790 UNP P21580 TNAP3_HUMAN 757 790 SEQRES 1 D 33 GLY PRO PRO LYS GLN ARG CYS ARG ALA PRO ALA CYS ASP SEQRES 2 D 33 HIS PHE GLY ASN ALA LYS CYS ASN GLY TYR CYS ASN GLU SEQRES 3 D 33 CYS PHE GLN PHE LYS GLN MET ATOM 1 N PRO D 757 8.907 26.493 -45.584 1.00 87.27 ATOM 2 CA PRO D 757 9.041 25.833 -44.281 1.00 86.64 ATOM 3 C PRO D 757 7.694 25.364 -43.742 1.00 85.61 ATOM 4 O PRO D 757 6.721 26.116 -43.798 1.00 85.37 ATOM 5 CB PRO D 757 9.605 26.942 -43.390 1.00 85.68 ATOM 6 CG PRO D 757 10.356 27.821 -44.328 1.00 88.32 ATOM 7 CD PRO D 757 9.568 27.810 -45.608 1.00 89.12 ATOM 8 N PRO D 758 7.640 24.126 -43.227 1.00 83.47 ATOM 9 CA PRO D 758 6.420 23.552 -42.646 1.00 77.00 ATOM 10 C PRO D 758 5.962 24.327 -41.414 1.00 69.34 ATOM 11 O PRO D 758 6.793 24.807 -40.643 1.00 69.01 ATOM 12 CB PRO D 758 6.857 22.140 -42.241 1.00 79.41 ATOM 13 CG PRO D 758 8.045 21.845 -43.096 1.00 84.50 ATOM 14 CD PRO D 758 8.748 23.157 -43.245 1.00 84.67 ATOM 15 N LYS D 759 4.650 24.442 -41.238 1.00 64.36 ATOM 16 CA LYS D 759 4.087 25.172 -40.110 1.00 64.13 ATOM 17 C LYS D 759 4.307 24.425 -38.798 1.00 63.26 ATOM 18 O LYS D 759 4.166 23.204 -38.738 1.00 74.03 ATOM 19 CB LYS D 759 2.593 25.420 -40.328 1.00 64.89 ATOM 20 N GLN D 760 4.656 25.165 -37.751 1.00 46.19 ATOM 21 CA GLN D 760 4.869 24.576 -36.434 1.00 44.48 ATOM 22 C GLN D 760 4.120 25.345 -35.353 1.00 35.79 ATOM 23 O GLN D 760 4.130 26.576 -35.334 1.00 33.95 ATOM 24 CB GLN D 760 6.360 24.530 -36.093 1.00 55.13 ATOM 25 CG GLN D 760 7.159 23.536 -36.916 1.00 67.07 ATOM 26 CD GLN D 760 8.015 22.631 -36.053 1.00 75.98 ATOM 27 OE1 GLN D 760 9.160 22.955 -35.738 1.00 76.76 ATOM 28 NE2 GLN D 760 7.460 21.490 -35.663 1.00 82.86 ATOM 29 N ARG D 761 3.468 24.614 -34.457 1.00 37.21 ATOM 30 CA ARG D 761 2.793 25.230 -33.325 1.00 38.14 ATOM 31 C ARG D 761 3.829 25.870 -32.413 1.00 26.62 ATOM 32 O ARG D 761 4.982 25.440 -32.380 1.00 29.25 ATOM 33 CB ARG D 761 1.978 24.192 -32.554 1.00 35.93 ATOM 34 CG ARG D 761 0.820 23.603 -33.345 1.00 39.48 ATOM 35 CD ARG D 761 -0.229 24.660 -33.659 1.00 37.91 ATOM 36 NE ARG D 761 -1.349 24.106 -34.414 1.00 41.74 ATOM 37 CZ ARG D 761 -2.490 24.750 -34.640 1.00 39.69 ATOM 38 NH1 ARG D 761 -2.670 25.973 -34.165 1.00 37.85 ATOM 39 NH2 ARG D 761 -3.455 24.168 -35.339 1.00 47.32 ATOM 40 N CYS D 762 3.422 26.903 -31.684 1.00 25.54 ATOM 41 CA CYS D 762 4.329 27.580 -30.767 1.00 29.67 ATOM 42 C CYS D 762 4.877 26.626 -29.712 1.00 26.86 ATOM 43 O CYS D 762 4.224 25.651 -29.345 1.00 27.63 ATOM 44 CB CYS D 762 3.640 28.752 -30.080 1.00 24.50 ATOM 45 SG CYS D 762 4.651 29.450 -28.769 1.00 26.77 ATOM 46 N ARG D 763 6.077 26.921 -29.225 1.00 29.85 ATOM 47 CA ARG D 763 6.748 26.046 -28.271 1.00 33.91 ATOM 48 C ARG D 763 6.182 26.169 -26.858 1.00 29.11 ATOM 49 O ARG D 763 6.426 25.308 -26.014 1.00 34.69 ATOM 50 CB ARG D 763 8.255 26.317 -28.256 1.00 37.60 ATOM 51 CG ARG D 763 8.699 27.355 -27.233 1.00 54.33 ATOM 52 CD ARG D 763 10.218 27.398 -27.092 1.00 61.84 ATOM 53 NE ARG D 763 10.902 26.634 -28.132 1.00 67.42 ATOM 54 CZ ARG D 763 11.415 25.420 -27.952 1.00 73.47 ATOM 55 NH1 ARG D 763 11.320 24.826 -26.769 1.00 70.34 ATOM 56 NH2 ARG D 763 12.018 24.799 -28.956 1.00 75.26 ATOM 57 N ALA D 764 5.431 27.237 -26.603 1.00 27.79 ATOM 58 CA ALA D 764 4.829 27.450 -25.288 1.00 27.98 ATOM 59 C ALA D 764 3.767 26.394 -24.999 1.00 32.81 ATOM 60 O ALA D 764 2.972 26.059 -25.877 1.00 32.64 ATOM 61 CB ALA D 764 4.229 28.846 -25.192 1.00 30.10 ATOM 62 N PRO D 765 3.756 25.863 -23.765 1.00 36.64 ATOM 63 CA PRO D 765 2.772 24.851 -23.363 1.00 35.35 ATOM 64 C PRO D 765 1.342 25.360 -23.512 1.00 36.13 ATOM 65 O PRO D 765 1.039 26.477 -23.087 1.00 33.88 ATOM 66 CB PRO D 765 3.097 24.615 -21.885 1.00 36.46 ATOM 67 CG PRO D 765 4.527 25.009 -21.743 1.00 39.06 ATOM 68 CD PRO D 765 4.715 26.158 -22.687 1.00 33.09 ATOM 69 N ALA D 766 0.494 24.545 -24.135 1.00 34.18 ATOM 70 CA ALA D 766 -0.934 24.829 -24.305 1.00 36.91 ATOM 71 C ALA D 766 -1.281 25.986 -25.250 1.00 28.64 ATOM 72 O ALA D 766 -2.455 26.304 -25.427 1.00 43.00 ATOM 73 CB ALA D 766 -1.626 25.011 -22.948 1.00 31.31 ATOM 74 N CYS D 767 -0.280 26.614 -25.857 1.00 27.48 ATOM 75 CA CYS D 767 -0.567 27.635 -26.863 1.00 26.12 ATOM 76 C CYS D 767 -0.755 27.029 -28.252 1.00 30.17 ATOM 77 O CYS D 767 0.047 26.210 -28.700 1.00 33.83 ATOM 78 CB CYS D 767 0.510 28.714 -26.911 1.00 26.16 ATOM 79 SG CYS D 767 0.105 30.021 -28.098 1.00 24.16 ATOM 80 N ASP D 768 -1.817 27.454 -28.929 1.00 28.43 ATOM 81 CA ASP D 768 -2.183 26.895 -30.225 1.00 38.05 ATOM 82 C ASP D 768 -1.797 27.794 -31.398 1.00 32.98 ATOM 83 O ASP D 768 -2.166 27.522 -32.538 1.00 28.66 ATOM 84 CB ASP D 768 -3.683 26.595 -30.266 1.00 44.62 ATOM 85 CG ASP D 768 -4.519 27.729 -29.702 1.00 56.51 ATOM 86 OD1 ASP D 768 -3.968 28.831 -29.496 1.00 52.33 ATOM 87 OD2 ASP D 768 -5.728 27.517 -29.468 1.00 60.53 ATOM 88 N HIS D 769 -1.061 28.865 -31.122 1.00 25.60 ATOM 89 CA HIS D 769 -0.574 29.735 -32.186 1.00 22.96 ATOM 90 C HIS D 769 0.514 29.031 -32.984 1.00 32.94 ATOM 91 O HIS D 769 1.026 27.991 -32.569 1.00 27.92 ATOM 92 CB HIS D 769 -0.018 31.041 -31.617 1.00 22.38 ATOM 93 CG HIS D 769 -1.069 31.996 -31.137 1.00 26.15 ATOM 94 ND1 HIS D 769 -0.771 33.107 -30.384 1.00 22.26 ATOM 95 CD2 HIS D 769 -2.411 32.004 -31.315 1.00 26.81 ATOM 96 CE1 HIS D 769 -1.887 33.762 -30.109 1.00 24.06 ATOM 97 NE2 HIS D 769 -2.895 33.115 -30.662 1.00 29.26 ATOM 98 N PHE D 770 0.862 29.601 -34.133 1.00 29.22 ATOM 99 CA PHE D 770 2.003 29.124 -34.900 1.00 23.69 ATOM 100 C PHE D 770 3.244 29.897 -34.476 1.00 23.08 ATOM 101 O PHE D 770 3.221 31.125 -34.396 1.00 22.50 ATOM 102 CB PHE D 770 1.764 29.296 -36.403 1.00 23.18 ATOM 103 CG PHE D 770 0.646 28.450 -36.940 1.00 23.74 ATOM 104 CD1 PHE D 770 -0.641 28.953 -37.028 1.00 23.46 ATOM 105 CD2 PHE D 770 0.883 27.148 -37.352 1.00 30.43 ATOM 106 CE1 PHE D 770 -1.672 28.174 -37.520 1.00 34.80 ATOM 107 CE2 PHE D 770 -0.142 26.364 -37.845 1.00 34.49 ATOM 108 CZ PHE D 770 -1.422 26.878 -37.929 1.00 42.48 ATOM 109 N GLY D 771 4.322 29.177 -34.192 1.00 23.95 ATOM 110 CA GLY D 771 5.574 29.813 -33.830 1.00 24.28 ATOM 111 C GLY D 771 6.375 30.167 -35.066 1.00 28.36 ATOM 112 O GLY D 771 6.081 29.683 -36.159 1.00 27.39 ATOM 113 N ASN D 772 7.381 31.018 -34.901 1.00 27.71 ATOM 114 CA ASN D 772 8.266 31.367 -36.008 1.00 34.82 ATOM 115 C ASN D 772 9.736 31.314 -35.600 1.00 41.02 ATOM 116 O ASN D 772 10.064 31.404 -34.417 1.00 46.87 ATOM 117 CB ASN D 772 7.906 32.736 -36.596 1.00 27.41 ATOM 118 CG ASN D 772 8.061 33.864 -35.595 1.00 32.68 ATOM 119 OD1 ASN D 772 9.132 34.459 -35.475 1.00 26.24 ATOM 120 ND2 ASN D 772 6.988 34.170 -34.877 1.00 24.14 ATOM 121 N ALA D 773 10.613 31.163 -36.586 1.00 35.72 ATOM 122 CA ALA D 773 12.037 30.970 -36.332 1.00 33.80 ATOM 123 C ALA D 773 12.705 32.204 -35.733 1.00 33.18 ATOM 124 O ALA D 773 13.684 32.089 -34.995 1.00 37.08 ATOM 125 CB ALA D 773 12.749 30.546 -37.609 1.00 35.91 ATOM 126 N LYS D 774 12.177 33.379 -36.055 1.00 30.24 ATOM 127 CA LYS D 774 12.717 34.630 -35.534 1.00 36.30 ATOM 128 C LYS D 774 12.514 34.701 -34.025 1.00 36.59 ATOM 129 O LYS D 774 13.356 35.224 -33.297 1.00 33.16 ATOM 130 CB LYS D 774 12.048 35.825 -36.216 1.00 40.63 ATOM 131 CG LYS D 774 12.711 37.166 -35.938 1.00 48.08 ATOM 132 CD LYS D 774 12.003 38.288 -36.686 1.00 54.43 ATOM 133 CE LYS D 774 12.845 39.557 -36.727 1.00 62.96 ATOM 134 NZ LYS D 774 13.129 40.100 -35.369 1.00 66.67 ATOM 135 N CYS D 775 11.390 34.162 -33.565 1.00 34.91 ATOM 136 CA CYS D 775 11.062 34.158 -32.146 1.00 37.41 ATOM 137 C CYS D 775 11.455 32.843 -31.473 1.00 42.17 ATOM 138 O CYS D 775 10.893 32.477 -30.441 1.00 36.07 ATOM 139 CB CYS D 775 9.569 34.429 -31.947 1.00 26.89 ATOM 140 SG CYS D 775 9.050 36.088 -32.436 1.00 30.77 ATOM 141 N ASN D 776 12.417 32.144 -32.069 1.00 30.78 ATOM 142 CA ASN D 776 12.946 30.896 -31.518 1.00 40.20 ATOM 143 C ASN D 776 11.890 29.816 -31.292 1.00 41.50 ATOM 144 O ASN D 776 11.972 29.049 -30.332 1.00 44.72 ATOM 145 CB ASN D 776 13.712 31.160 -30.218 1.00 33.40 ATOM 146 CG ASN D 776 14.872 32.114 -30.409 1.00 41.20 ATOM 147 OD1 ASN D 776 15.632 32.001 -31.371 1.00 40.28 ATOM 148 ND2 ASN D 776 15.010 33.068 -29.496 1.00 42.50 ATOM 149 N GLY D 777 10.901 29.761 -32.177 1.00 29.55 ATOM 150 CA GLY D 777 9.858 28.756 -32.082 1.00 28.88 ATOM 151 C GLY D 777 8.611 29.252 -31.378 1.00 36.58 ATOM 152 O GLY D 777 7.559 28.617 -31.442 1.00 35.08 ATOM 153 N TYR D 778 8.730 30.385 -30.694 1.00 26.98 ATOM 154 CA TYR D 778 7.581 31.006 -30.047 1.00 29.84 ATOM 155 C TYR D 778 6.738 31.742 -31.077 1.00 31.77 ATOM 156 O TYR D 778 7.233 32.122 -32.136 1.00 28.47 ATOM 157 CB TYR D 778 8.028 32.007 -28.979 1.00 27.05 ATOM 158 CG TYR D 778 8.489 31.398 -27.675 1.00 29.21 ATOM 159 CD1 TYR D 778 7.572 30.923 -26.745 1.00 32.22 ATOM 160 CD2 TYR D 778 9.839 31.325 -27.359 1.00 29.65 ATOM 161 CE1 TYR D 778 7.988 30.376 -25.543 1.00 32.08 ATOM 162 CE2 TYR D 778 10.265 30.781 -26.161 1.00 34.96 ATOM 163 CZ TYR D 778 9.336 30.308 -25.258 1.00 36.93 ATOM 164 OH TYR D 778 9.759 29.766 -24.066 1.00 48.14 ATOM 165 N CYS D 779 5.464 31.948 -30.763 1.00 32.40 ATOM 166 CA CYS D 779 4.647 32.858 -31.548 1.00 24.74 ATOM 167 C CYS D 779 5.039 34.269 -31.134 1.00 30.36 ATOM 168 O CYS D 779 5.723 34.454 -30.126 1.00 29.63 ATOM 169 CB CYS D 779 3.158 32.623 -31.293 1.00 34.31 ATOM 170 SG CYS D 779 2.504 33.409 -29.798 1.00 26.06 ATOM 171 N ASN D 780 4.612 35.261 -31.907 1.00 25.32 ATOM 172 CA ASN D 780 4.965 36.647 -31.617 1.00 24.52 ATOM 173 C ASN D 780 4.443 37.143 -30.269 1.00 23.77 ATOM 174 O ASN D 780 5.128 37.886 -29.566 1.00 24.73 ATOM 175 CB ASN D 780 4.490 37.572 -32.738 1.00 23.42 ATOM 176 CG ASN D 780 5.164 37.275 -34.060 1.00 31.21 ATOM 177 OD1 ASN D 780 6.363 37.501 -34.221 1.00 24.43 ATOM 178 ND2 ASN D 780 4.396 36.768 -35.017 1.00 24.09 ATOM 179 N GLU D 781 3.231 36.728 -29.915 1.00 23.22 ATOM 180 CA GLU D 781 2.601 37.182 -28.682 1.00 23.68 ATOM 181 C GLU D 781 3.332 36.633 -27.460 1.00 34.32 ATOM 182 O GLU D 781 3.638 37.374 -26.526 1.00 26.29 ATOM 183 CB GLU D 781 1.121 36.783 -28.653 1.00 23.61 ATOM 184 CG GLU D 781 0.299 37.487 -27.580 1.00 28.86 ATOM 185 CD GLU D 781 -1.195 37.294 -27.774 1.00 39.70 ATOM 186 OE1 GLU D 781 -1.588 36.631 -28.757 1.00 39.71 ATOM 187 OE2 GLU D 781 -1.979 37.806 -26.945 1.00 24.98 ATOM 188 N CYS D 782 3.622 35.336 -27.478 1.00 23.95 ATOM 189 CA CYS D 782 4.322 34.698 -26.368 1.00 27.37 ATOM 190 C CYS D 782 5.773 35.151 -26.258 1.00 27.41 ATOM 191 O CYS D 782 6.315 35.251 -25.156 1.00 26.66 ATOM 192 CB CYS D 782 4.239 33.176 -26.473 1.00 24.56 ATOM 193 SG CYS D 782 2.640 32.511 -25.974 1.00 32.31 ATOM 194 N PHE D 783 6.400 35.426 -27.398 1.00 26.25 ATOM 195 CA PHE D 783 7.768 35.928 -27.392 1.00 26.77 ATOM 196 C PHE D 783 7.813 37.290 -26.712 1.00 27.67 ATOM 197 O PHE D 783 8.751 37.595 -25.980 1.00 30.62 ATOM 198 CB PHE D 783 8.332 36.024 -28.812 1.00 26.72 ATOM 199 CG PHE D 783 9.809 36.297 -28.857 1.00 28.36 ATOM 200 CD1 PHE D 783 10.721 35.269 -28.683 1.00 37.50 ATOM 201 CD2 PHE D 783 10.287 37.580 -29.065 1.00 29.39 ATOM 202 CE1 PHE D 783 12.081 35.513 -28.721 1.00 31.13 ATOM 203 CE2 PHE D 783 11.647 37.830 -29.105 1.00 31.28 ATOM 204 CZ PHE D 783 12.544 36.795 -28.932 1.00 32.15 ATOM 205 N GLN D 784 6.782 38.095 -26.949 1.00 27.11 ATOM 206 CA GLN D 784 6.668 39.413 -26.333 1.00 35.55 ATOM 207 C GLN D 784 6.498 39.302 -24.817 1.00 37.91 ATOM 208 O GLN D 784 7.127 40.040 -24.059 1.00 34.89 ATOM 209 CB GLN D 784 5.499 40.186 -26.949 1.00 42.79 ATOM 210 CG GLN D 784 5.320 41.595 -26.408 1.00 57.05 ATOM 211 CD GLN D 784 4.230 42.365 -27.132 1.00 68.58 ATOM 212 OE1 GLN D 784 4.010 42.177 -28.329 1.00 72.13 ATOM 213 NE2 GLN D 784 3.536 43.235 -26.405 1.00 66.89 ATOM 214 N PHE D 785 5.649 38.374 -24.382 1.00 30.32 ATOM 215 CA PHE D 785 5.440 38.136 -22.956 1.00 31.22 ATOM 216 C PHE D 785 6.701 37.595 -22.295 1.00 29.88 ATOM 217 O PHE D 785 6.992 37.912 -21.143 1.00 34.56 ATOM 218 CB PHE D 785 4.278 37.167 -22.726 1.00 27.89 ATOM 219 CG PHE D 785 2.927 37.824 -22.733 1.00 27.74 ATOM 220 CD1 PHE D 785 2.524 38.620 -21.673 1.00 30.37 ATOM 221 CD2 PHE D 785 2.053 37.632 -23.790 1.00 26.62 ATOM 222 CE1 PHE D 785 1.279 39.222 -21.672 1.00 33.66 ATOM 223 CE2 PHE D 785 0.806 38.230 -23.794 1.00 26.84 ATOM 224 CZ PHE D 785 0.420 39.026 -22.734 1.00 31.75 ATOM 225 N LYS D 786 7.443 36.774 -23.031 1.00 30.04 ATOM 226 CA LYS D 786 8.692 36.214 -22.530 1.00 37.64 ATOM 227 C LYS D 786 9.701 37.317 -22.223 1.00 42.14 ATOM 228 O LYS D 786 10.482 37.211 -21.277 1.00 41.85 ATOM 229 CB LYS D 786 9.276 35.214 -23.531 1.00 34.09 ATOM 230 CG LYS D 786 10.646 34.687 -23.147 1.00 36.71 ATOM 231 CD LYS D 786 10.946 33.364 -23.823 1.00 41.13 ATOM 232 CE LYS D 786 12.264 33.425 -24.571 1.00 51.21 ATOM 233 NZ LYS D 786 13.350 33.979 -23.715 1.00 50.78 ATOM 234 N GLN D 787 9.678 38.380 -23.022 1.00 42.04 ATOM 235 CA GLN D 787 10.524 39.534 -22.758 1.00 47.68 ATOM 236 C GLN D 787 10.045 40.234 -21.491 1.00 48.61 ATOM 237 O GLN D 787 10.850 40.631 -20.652 1.00 54.77 ATOM 238 CB GLN D 787 10.513 40.514 -23.935 1.00 48.90 ATOM 239 CG GLN D 787 10.723 39.874 -25.299 1.00 61.79 ATOM 240 CD GLN D 787 11.883 38.897 -25.326 1.00 68.09 ATOM 241 OE1 GLN D 787 13.008 39.238 -24.960 1.00 78.65 ATOM 242 NE2 GLN D 787 11.612 37.670 -25.759 1.00 55.19 ATOM 243 N MET D 788 8.729 40.375 -21.356 1.00 47.57 ATOM 244 CA MET D 788 8.146 41.005 -20.176 1.00 52.35 ATOM 245 C MET D 788 8.443 40.190 -18.925 1.00 54.32 ATOM 246 O MET D 788 8.737 40.744 -17.866 1.00 55.78 ATOM 247 CB MET D 788 6.630 41.158 -20.326 1.00 57.05 ATOM 248 CG MET D 788 6.165 41.912 -21.562 1.00 56.35 ATOM 249 SD MET D 788 4.406 42.300 -21.446 1.00 91.64 ATOM 250 CE MET D 788 3.981 42.541 -23.167 1.00 46.44 ATOM 251 ZN ZN D 801 2.553 31.058 -28.306 1.00 27.38 ATOM 252 K K D 802 2.308 24.451 -27.965 1.00 45.62 TER