HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 31-JAN-14 3WQR TITLE Crystal structure of pfdxr complexed with inhibitor-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.267; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.97 ANGSTORMS DBREF 3WQR B 1 488 UNP O96693 DXR_PLAFX 1 488 SEQRES 1 B 30 SER GLU ASN SER GLU ASP LEU MET LYS GLN ILE LEU GLN SEQRES 2 B 30 ILE HIS SER TRP ALA LYS ASP LYS ALA THR ASP ILE TYR SEQRES 3 B 30 ASN LYS HIS ASN ATOM 1 N SER B 457 -9.175 -15.430 60.088 1.00 40.51 ATOM 2 CA SER B 457 -8.093 -16.346 60.408 1.00 41.79 ATOM 3 C SER B 457 -6.970 -16.295 59.354 1.00 42.36 ATOM 4 O SER B 457 -7.211 -15.942 58.193 1.00 42.40 ATOM 5 CB SER B 457 -8.632 -17.765 60.639 1.00 41.71 ATOM 6 OG SER B 457 -8.864 -18.440 59.426 1.00 43.23 ATOM 7 N GLU B 458 -5.749 -16.637 59.772 1.00 43.11 ATOM 8 CA GLU B 458 -4.550 -16.311 58.987 1.00 43.67 ATOM 9 C GLU B 458 -4.096 -17.384 58.009 1.00 43.60 ATOM 10 O GLU B 458 -3.609 -17.051 56.930 1.00 44.06 ATOM 11 CB GLU B 458 -3.382 -15.878 59.888 1.00 44.11 ATOM 12 CG GLU B 458 -3.727 -14.803 60.921 1.00 45.57 ATOM 13 CD GLU B 458 -4.138 -15.398 62.266 1.00 47.71 ATOM 14 OE1 GLU B 458 -3.251 -15.930 62.967 1.00 48.71 ATOM 15 OE2 GLU B 458 -5.338 -15.333 62.625 1.00 48.33 ATOM 16 N ASN B 459 -4.231 -18.658 58.367 1.00 43.58 ATOM 17 CA ASN B 459 -3.892 -19.720 57.416 1.00 43.91 ATOM 18 C ASN B 459 -5.065 -20.113 56.520 1.00 43.73 ATOM 19 O ASN B 459 -6.235 -19.993 56.912 1.00 43.55 ATOM 20 CB ASN B 459 -3.268 -20.949 58.093 1.00 44.21 ATOM 21 CG ASN B 459 -4.212 -21.635 59.048 1.00 45.42 ATOM 22 OD1 ASN B 459 -4.469 -21.140 60.152 1.00 47.57 ATOM 23 ND2 ASN B 459 -4.729 -22.792 58.639 1.00 45.67 ATOM 24 N SER B 460 -4.713 -20.591 55.327 1.00 43.50 ATOM 25 CA SER B 460 -5.646 -20.906 54.247 1.00 43.40 ATOM 26 C SER B 460 -6.700 -21.937 54.610 1.00 43.26 ATOM 27 O SER B 460 -7.887 -21.716 54.366 1.00 43.19 ATOM 28 CB SER B 460 -4.873 -21.378 53.011 1.00 43.25 ATOM 29 OG SER B 460 -3.981 -20.376 52.574 1.00 43.73 ATOM 30 N GLU B 461 -6.262 -23.066 55.172 1.00 43.20 ATOM 31 CA GLU B 461 -7.173 -24.146 55.569 1.00 43.18 ATOM 32 C GLU B 461 -8.209 -23.667 56.587 1.00 42.60 ATOM 33 O GLU B 461 -9.390 -24.022 56.496 1.00 42.70 ATOM 34 CB GLU B 461 -6.404 -25.346 56.127 1.00 43.51 ATOM 35 CG GLU B 461 -5.711 -26.198 55.069 1.00 45.38 ATOM 36 CD GLU B 461 -4.210 -25.925 54.957 1.00 48.12 ATOM 37 OE1 GLU B 461 -3.802 -24.741 54.909 1.00 48.64 ATOM 38 OE2 GLU B 461 -3.434 -26.907 54.905 1.00 49.08 ATOM 39 N ASP B 462 -7.750 -22.854 57.539 1.00 41.66 ATOM 40 CA ASP B 462 -8.595 -22.272 58.581 1.00 40.69 ATOM 41 C ASP B 462 -9.606 -21.282 58.005 1.00 39.66 ATOM 42 O ASP B 462 -10.772 -21.276 58.401 1.00 39.51 ATOM 43 CB ASP B 462 -7.734 -21.538 59.615 1.00 41.02 ATOM 44 CG ASP B 462 -7.289 -22.428 60.773 1.00 42.49 ATOM 45 OD1 ASP B 462 -7.107 -23.663 60.588 1.00 43.03 ATOM 46 OD2 ASP B 462 -7.106 -21.860 61.879 1.00 43.80 ATOM 47 N LEU B 463 -9.145 -20.428 57.093 1.00 37.90 ATOM 48 CA LEU B 463 -10.002 -19.419 56.488 1.00 36.67 ATOM 49 C LEU B 463 -11.093 -20.067 55.633 1.00 36.01 ATOM 50 O LEU B 463 -12.235 -19.613 55.649 1.00 35.79 ATOM 51 CB LEU B 463 -9.182 -18.403 55.684 1.00 35.69 ATOM 52 CG LEU B 463 -9.910 -17.272 54.947 1.00 35.12 ATOM 53 CD1 LEU B 463 -10.812 -16.441 55.872 1.00 32.50 ATOM 54 CD2 LEU B 463 -8.906 -16.376 54.248 1.00 32.59 ATOM 55 N MET B 464 -10.737 -21.127 54.909 1.00 35.33 ATOM 56 CA MET B 464 -11.705 -21.882 54.117 1.00 35.24 ATOM 57 C MET B 464 -12.804 -22.499 54.985 1.00 34.97 ATOM 58 O MET B 464 -13.991 -22.366 54.673 1.00 34.85 ATOM 59 CB MET B 464 -11.022 -22.961 53.269 1.00 35.21 ATOM 60 CG MET B 464 -11.990 -23.812 52.434 1.00 36.93 ATOM 61 SD MET B 464 -13.153 -22.820 51.443 1.00 41.29 ATOM 62 CE MET B 464 -12.610 -23.174 49.773 1.00 41.89 ATOM 63 N LYS B 465 -12.415 -23.177 56.065 1.00 34.19 ATOM 64 CA LYS B 465 -13.405 -23.753 56.975 1.00 33.61 ATOM 65 C LYS B 465 -14.248 -22.659 57.653 1.00 32.51 ATOM 66 O LYS B 465 -15.434 -22.862 57.914 1.00 32.44 ATOM 67 CB LYS B 465 -12.762 -24.730 57.982 1.00 33.85 ATOM 68 CG LYS B 465 -11.964 -24.084 59.119 1.00 35.67 ATOM 69 CD LYS B 465 -11.291 -25.125 60.043 1.00 38.11 ATOM 70 CE LYS B 465 -10.036 -25.733 59.399 1.00 39.95 ATOM 71 NZ LYS B 465 -9.102 -26.333 60.404 1.00 41.10 ATOM 72 N GLN B 466 -13.644 -21.497 57.902 1.00 31.43 ATOM 73 CA GLN B 466 -14.380 -20.351 58.438 1.00 30.79 ATOM 74 C GLN B 466 -15.452 -19.867 57.440 1.00 30.26 ATOM 75 O GLN B 466 -16.608 -19.631 57.827 1.00 30.18 ATOM 76 CB GLN B 466 -13.435 -19.218 58.804 1.00 30.93 ATOM 77 CG GLN B 466 -14.045 -18.185 59.751 1.00 32.76 ATOM 78 CD GLN B 466 -13.092 -17.045 60.096 1.00 35.24 ATOM 79 OE1 GLN B 466 -12.006 -16.914 59.516 1.00 35.13 ATOM 80 NE2 GLN B 466 -13.508 -16.198 61.034 1.00 35.20 ATOM 81 N ILE B 467 -15.057 -19.736 56.168 1.00 28.64 ATOM 82 CA ILE B 467 -15.980 -19.392 55.077 1.00 27.78 ATOM 83 C ILE B 467 -17.145 -20.379 54.979 1.00 27.25 ATOM 84 O ILE B 467 -18.297 -19.965 54.911 1.00 27.34 ATOM 85 CB ILE B 467 -15.243 -19.280 53.703 1.00 27.50 ATOM 86 CG1 ILE B 467 -14.303 -18.078 53.704 1.00 26.84 ATOM 87 CG2 ILE B 467 -16.263 -19.173 52.521 1.00 26.51 ATOM 88 CD1 ILE B 467 -13.261 -18.114 52.608 1.00 25.91 ATOM 89 N LEU B 468 -16.833 -21.672 54.994 1.00 26.96 ATOM 90 CA LEU B 468 -17.836 -22.733 54.901 1.00 27.00 ATOM 91 C LEU B 468 -18.848 -22.703 56.056 1.00 26.65 ATOM 92 O LEU B 468 -20.050 -22.854 55.823 1.00 26.41 ATOM 93 CB LEU B 468 -17.158 -24.097 54.813 1.00 27.00 ATOM 94 CG LEU B 468 -16.373 -24.399 53.529 1.00 29.22 ATOM 95 CD1 LEU B 468 -15.353 -25.505 53.774 1.00 30.09 ATOM 96 CD2 LEU B 468 -17.302 -24.784 52.380 1.00 29.90 ATOM 97 N GLN B 469 -18.356 -22.482 57.279 1.00 26.11 ATOM 98 CA GLN B 469 -19.201 -22.309 58.473 1.00 26.24 ATOM 99 C GLN B 469 -20.172 -21.138 58.330 1.00 25.25 ATOM 100 O GLN B 469 -21.361 -21.263 58.602 1.00 24.72 ATOM 101 CB GLN B 469 -18.331 -22.094 59.734 1.00 27.00 ATOM 102 CG GLN B 469 -19.147 -21.860 61.015 1.00 30.34 ATOM 103 CD GLN B 469 -18.348 -21.232 62.170 1.00 35.44 ATOM 104 OE1 GLN B 469 -17.866 -20.089 62.077 1.00 37.95 ATOM 105 NE2 GLN B 469 -18.246 -21.966 63.283 1.00 35.33 ATOM 106 N ILE B 470 -19.644 -19.993 57.920 1.00 24.68 ATOM 107 CA ILE B 470 -20.434 -18.781 57.799 1.00 24.27 ATOM 108 C ILE B 470 -21.465 -18.926 56.671 1.00 23.66 ATOM 109 O ILE B 470 -22.624 -18.528 56.818 1.00 23.03 ATOM 110 CB ILE B 470 -19.516 -17.548 57.647 1.00 24.35 ATOM 111 CG1 ILE B 470 -18.726 -17.357 58.955 1.00 25.62 ATOM 112 CG2 ILE B 470 -20.319 -16.301 57.342 1.00 23.82 ATOM 113 CD1 ILE B 470 -17.675 -16.300 58.916 1.00 25.32 ATOM 114 N HIS B 471 -21.043 -19.548 55.573 1.00 23.49 ATOM 115 CA HIS B 471 -21.919 -19.798 54.442 1.00 23.24 ATOM 116 C HIS B 471 -23.112 -20.653 54.865 1.00 23.38 ATOM 117 O HIS B 471 -24.257 -20.294 54.593 1.00 22.05 ATOM 118 CB HIS B 471 -21.153 -20.495 53.327 1.00 23.53 ATOM 119 CG HIS B 471 -21.984 -20.773 52.117 1.00 23.69 ATOM 120 ND1 HIS B 471 -22.371 -19.781 51.244 1.00 23.94 ATOM 121 CD2 HIS B 471 -22.512 -21.923 51.638 1.00 24.37 ATOM 122 CE1 HIS B 471 -23.101 -20.306 50.278 1.00 22.35 ATOM 123 NE2 HIS B 471 -23.194 -21.605 50.487 1.00 24.47 ATOM 124 N SER B 472 -22.830 -21.769 55.544 1.00 23.39 ATOM 125 CA SER B 472 -23.875 -22.654 56.062 1.00 23.75 ATOM 126 C SER B 472 -24.748 -21.945 57.082 1.00 22.72 ATOM 127 O SER B 472 -25.962 -22.080 57.045 1.00 22.20 ATOM 128 CB SER B 472 -23.279 -23.907 56.698 1.00 23.95 ATOM 129 OG SER B 472 -22.495 -24.582 55.744 1.00 28.19 ATOM 130 N TRP B 473 -24.126 -21.195 57.990 1.00 22.21 ATOM 131 CA TRP B 473 -24.895 -20.399 58.940 1.00 22.40 ATOM 132 C TRP B 473 -25.889 -19.450 58.242 1.00 21.75 ATOM 133 O TRP B 473 -27.049 -19.368 58.638 1.00 21.53 ATOM 134 CB TRP B 473 -23.996 -19.602 59.893 1.00 22.36 ATOM 135 CG TRP B 473 -24.801 -18.665 60.743 1.00 24.00 ATOM 136 CD1 TRP B 473 -25.432 -18.960 61.926 1.00 25.00 ATOM 137 CD2 TRP B 473 -25.097 -17.286 60.462 1.00 25.22 ATOM 138 NE1 TRP B 473 -26.093 -17.845 62.399 1.00 26.79 ATOM 139 CE2 TRP B 473 -25.903 -16.806 61.525 1.00 26.17 ATOM 140 CE3 TRP B 473 -24.760 -16.412 59.417 1.00 25.64 ATOM 141 CZ2 TRP B 473 -26.375 -15.491 61.574 1.00 25.71 ATOM 142 CZ3 TRP B 473 -25.222 -15.105 59.463 1.00 25.40 ATOM 143 CH2 TRP B 473 -26.025 -14.654 60.541 1.00 26.99 ATOM 144 N ALA B 474 -25.427 -18.733 57.221 1.00 21.18 ATOM 145 CA ALA B 474 -26.247 -17.712 56.580 1.00 21.07 ATOM 146 C ALA B 474 -27.412 -18.337 55.819 1.00 20.94 ATOM 147 O ALA B 474 -28.510 -17.787 55.801 1.00 20.70 ATOM 148 CB ALA B 474 -25.396 -16.826 55.658 1.00 20.92 ATOM 149 N LYS B 475 -27.168 -19.494 55.215 1.00 21.11 ATOM 150 CA LYS B 475 -28.210 -20.222 54.503 1.00 22.24 ATOM 151 C LYS B 475 -29.279 -20.702 55.473 1.00 22.54 ATOM 152 O LYS B 475 -30.471 -20.526 55.222 1.00 21.72 ATOM 153 CB LYS B 475 -27.618 -21.382 53.709 1.00 22.52 ATOM 154 CG LYS B 475 -27.085 -20.953 52.328 1.00 24.45 ATOM 155 CD LYS B 475 -26.449 -22.114 51.567 1.00 29.21 ATOM 156 CE LYS B 475 -27.380 -23.315 51.429 1.00 33.13 ATOM 157 NZ LYS B 475 -26.609 -24.574 51.175 1.00 35.47 ATOM 158 N ASP B 476 -28.839 -21.272 56.597 1.00 23.13 ATOM 159 CA ASP B 476 -29.759 -21.690 57.652 1.00 23.75 ATOM 160 C ASP B 476 -30.555 -20.515 58.212 1.00 22.59 ATOM 161 O ASP B 476 -31.734 -20.656 58.483 1.00 23.05 ATOM 162 CB ASP B 476 -29.021 -22.443 58.773 1.00 24.55 ATOM 163 CG ASP B 476 -28.691 -23.891 58.399 1.00 28.68 ATOM 164 OD1 ASP B 476 -29.127 -24.382 57.326 1.00 33.36 ATOM 165 OD2 ASP B 476 -27.989 -24.554 59.191 1.00 33.92 ATOM 166 N LYS B 477 -29.921 -19.356 58.354 1.00 21.81 ATOM 167 CA LYS B 477 -30.588 -18.170 58.904 1.00 21.44 ATOM 168 C LYS B 477 -31.661 -17.615 57.950 1.00 21.14 ATOM 169 O LYS B 477 -32.753 -17.220 58.387 1.00 20.00 ATOM 170 CB LYS B 477 -29.553 -17.090 59.244 1.00 21.24 ATOM 171 CG LYS B 477 -30.109 -15.798 59.820 1.00 23.46 ATOM 172 CD LYS B 477 -30.540 -15.945 61.285 1.00 27.88 ATOM 173 CE LYS B 477 -31.189 -14.670 61.783 1.00 30.01 ATOM 174 NZ LYS B 477 -31.755 -14.861 63.158 1.00 32.47 ATOM 175 N ALA B 478 -31.334 -17.574 56.656 1.00 20.60 ATOM 176 CA ALA B 478 -32.284 -17.158 55.625 1.00 20.72 ATOM 177 C ALA B 478 -33.535 -18.038 55.636 1.00 21.38 ATOM 178 O ALA B 478 -34.656 -17.527 55.621 1.00 20.93 ATOM 179 CB ALA B 478 -31.617 -17.194 54.261 1.00 20.29 ATOM 180 N THR B 479 -33.324 -19.359 55.660 1.00 22.57 ATOM 181 CA THR B 479 -34.401 -20.350 55.730 1.00 23.97 ATOM 182 C THR B 479 -35.284 -20.186 56.982 1.00 25.01 ATOM 183 O THR B 479 -36.504 -20.256 56.890 1.00 25.13 ATOM 184 CB THR B 479 -33.836 -21.786 55.640 1.00 23.86 ATOM 185 OG1 THR B 479 -33.224 -21.965 54.356 1.00 23.84 ATOM 186 CG2 THR B 479 -34.938 -22.849 55.846 1.00 23.47 ATOM 187 N ASP B 480 -34.659 -19.946 58.132 1.00 26.43 ATOM 188 CA ASP B 480 -35.386 -19.673 59.384 1.00 27.18 ATOM 189 C ASP B 480 -36.249 -18.415 59.300 1.00 27.36 ATOM 190 O ASP B 480 -37.399 -18.405 59.768 1.00 26.84 ATOM 191 CB ASP B 480 -34.399 -19.485 60.535 1.00 27.85 ATOM 192 CG ASP B 480 -33.710 -20.763 60.942 1.00 29.74 ATOM 193 OD1 ASP B 480 -34.137 -21.869 60.536 1.00 32.03 ATOM 194 OD2 ASP B 480 -32.723 -20.651 61.696 1.00 34.22 ATOM 195 N ILE B 481 -35.679 -17.349 58.733 1.00 27.29 ATOM 196 CA ILE B 481 -36.433 -16.124 58.472 1.00 27.88 ATOM 197 C ILE B 481 -37.646 -16.448 57.594 1.00 28.31 ATOM 198 O ILE B 481 -38.762 -16.026 57.899 1.00 28.03 ATOM 199 CB ILE B 481 -35.546 -14.981 57.887 1.00 27.82 ATOM 200 CG1 ILE B 481 -34.610 -14.446 58.980 1.00 27.86 ATOM 201 CG2 ILE B 481 -36.411 -13.828 57.333 1.00 28.16 ATOM 202 CD1 ILE B 481 -33.458 -13.573 58.481 1.00 28.66 ATOM 203 N TYR B 482 -37.438 -17.235 56.541 1.00 28.92 ATOM 204 CA TYR B 482 -38.543 -17.614 55.671 1.00 30.11 ATOM 205 C TYR B 482 -39.603 -18.405 56.449 1.00 31.93 ATOM 206 O TYR B 482 -40.795 -18.096 56.365 1.00 31.44 ATOM 207 CB TYR B 482 -38.054 -18.426 54.472 1.00 29.51 ATOM 208 CG TYR B 482 -39.158 -19.195 53.802 1.00 27.68 ATOM 209 CD1 TYR B 482 -40.171 -18.530 53.117 1.00 26.93 ATOM 210 CD2 TYR B 482 -39.199 -20.588 53.857 1.00 27.48 ATOM 211 CE1 TYR B 482 -41.204 -19.228 52.496 1.00 27.26 ATOM 212 CE2 TYR B 482 -40.226 -21.297 53.242 1.00 27.95 ATOM 213 CZ TYR B 482 -41.227 -20.608 52.560 1.00 27.61 ATOM 214 OH TYR B 482 -42.253 -21.294 51.946 1.00 26.71 ATOM 215 N ASN B 483 -39.147 -19.421 57.188 1.00 34.00 ATOM 216 CA ASN B 483 -40.004 -20.259 58.027 1.00 36.74 ATOM 217 C ASN B 483 -40.831 -19.460 59.033 1.00 38.42 ATOM 218 O ASN B 483 -41.953 -19.839 59.360 1.00 38.69 ATOM 219 CB ASN B 483 -39.163 -21.286 58.789 1.00 36.72 ATOM 220 CG ASN B 483 -38.645 -22.404 57.906 1.00 37.22 ATOM 221 OD1 ASN B 483 -39.179 -22.680 56.835 1.00 37.65 ATOM 222 ND2 ASN B 483 -37.593 -23.067 58.367 1.00 38.54 ATOM 223 N LYS B 484 -40.267 -18.361 59.521 1.00 40.70 ATOM 224 CA LYS B 484 -40.932 -17.528 60.518 1.00 43.29 ATOM 225 C LYS B 484 -42.145 -16.803 59.926 1.00 44.63 ATOM 226 O LYS B 484 -43.202 -16.763 60.550 1.00 44.76 ATOM 227 CB LYS B 484 -39.949 -16.529 61.141 1.00 43.40 ATOM 228 CG LYS B 484 -39.844 -16.620 62.663 1.00 44.83 ATOM 229 CD LYS B 484 -39.024 -15.462 63.253 1.00 47.19 ATOM 230 CE LYS B 484 -39.911 -14.364 63.862 1.00 47.57 ATOM 231 NZ LYS B 484 -40.799 -13.695 62.874 1.00 48.71 ATOM 232 N HIS B 485 -41.997 -16.246 58.722 1.00 46.39 ATOM 233 CA HIS B 485 -43.102 -15.545 58.061 1.00 48.22 ATOM 234 C HIS B 485 -44.110 -16.518 57.427 1.00 48.89 ATOM 235 O HIS B 485 -45.171 -16.760 58.003 1.00 49.36 ATOM 236 CB HIS B 485 -42.592 -14.511 57.047 1.00 48.60 ATOM 237 CG HIS B 485 -43.683 -13.720 56.389 1.00 50.38 ATOM 238 ND1 HIS B 485 -44.254 -14.090 55.189 1.00 52.08 ATOM 239 CD2 HIS B 485 -44.310 -12.578 56.766 1.00 51.97 ATOM 240 CE1 HIS B 485 -45.183 -13.211 54.854 1.00 52.87 ATOM 241 NE2 HIS B 485 -45.238 -12.285 55.795 1.00 52.93 ATOM 242 N ASN B 486 -43.786 -17.064 56.255 1.00 49.65 ATOM 243 CA ASN B 486 -44.650 -18.050 55.591 1.00 50.35 ATOM 244 C ASN B 486 -44.581 -19.425 56.255 1.00 50.30 ATOM 245 O ASN B 486 -43.578 -20.128 56.152 1.00 50.29 ATOM 246 CB ASN B 486 -44.313 -18.171 54.095 1.00 50.70 ATOM 247 CG ASN B 486 -45.070 -17.164 53.227 1.00 51.79 ATOM 248 OD1 ASN B 486 -46.296 -17.038 53.323 1.00 52.93 ATOM 249 ND2 ASN B 486 -44.337 -16.460 52.352 1.00 51.54 TER