HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 35 REMARK 465 SER B 36 REMARK 465 GLN B 37 REMARK 465 GLY B 38 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 ILE B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLU B 44 REMARK 465 PHE B 45 REMARK 465 LYS B 46 REMARK 465 LYS B 47 REMARK 465 PHE B 48 REMARK 465 PHE B 49 REMARK 465 GLY B 50 REMARK 465 ASP B 51 REMARK 465 ASP B 52 REMARK 465 LEU B 53 REMARK 465 PRO B 54 REMARK 465 ASP B 55 REMARK 465 GLN B 56 REMARK 465 PRO B 57 DBREF 4A8A B 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 B 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 B 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 B 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 B 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 B 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 B 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 B 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 B 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 B 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 B 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 B 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 B 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 B 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 B 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 B 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 B 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 B 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 B 225 ILE ASP PHE GLY ATOM 1 CA PRO B 11 -39.176 40.778 40.055 1.00135.28 ATOM 2 CA LEU B 12 -37.093 43.296 38.313 1.00110.99 ATOM 3 CA PRO B 13 -38.630 46.541 37.474 1.00 80.82 ATOM 4 CA SER B 14 -38.956 47.485 33.846 1.00 65.63 ATOM 5 CA LEU B 15 -35.344 47.713 32.793 1.00107.79 ATOM 6 CA ALA B 16 -36.003 49.893 29.806 1.00 39.97 ATOM 7 CA PRO B 17 -36.496 53.030 31.759 1.00 65.93 ATOM 8 CA MET B 18 -33.190 52.626 33.554 1.00 37.46 ATOM 9 CA LEU B 19 -31.469 51.492 30.392 1.00 50.08 ATOM 10 CA GLU B 20 -32.577 54.425 28.330 1.00 66.79 ATOM 11 CA LYS B 21 -30.539 56.850 30.329 1.00125.77 ATOM 12 CA VAL B 22 -27.490 54.663 30.947 1.00151.96 ATOM 13 CA LEU B 23 -26.981 52.987 27.604 1.00 79.51 ATOM 14 CA PRO B 24 -25.307 55.829 25.818 1.00 66.13 ATOM 15 CA ALA B 25 -22.591 55.631 28.452 1.00 36.98 ATOM 16 CA VAL B 26 -21.530 52.213 27.235 1.00 40.63 ATOM 17 CA VAL B 27 -19.513 52.252 24.088 1.00117.92 ATOM 18 CA SER B 28 -17.959 49.872 21.598 1.00 36.21 ATOM 19 CA VAL B 29 -14.234 49.912 21.197 1.00 34.83 ATOM 20 CA ARG B 30 -12.673 49.114 17.887 1.00102.36 ATOM 21 CA VAL B 31 -9.057 48.193 17.576 1.00 40.31 ATOM 22 CA GLU B 32 -6.633 47.669 14.753 1.00 35.24 ATOM 23 CA GLY B 33 -3.039 46.643 14.946 1.00 30.95 ATOM 24 CA THR B 34 -0.303 44.145 14.243 1.00140.10 ATOM 25 CA ALA B 58 2.308 42.138 11.030 1.00 28.07 ATOM 26 CA GLN B 59 -0.941 41.073 9.486 1.00155.34 ATOM 27 CA PRO B 60 -3.519 43.525 10.503 1.00159.32 ATOM 28 CA PHE B 61 -6.351 42.332 12.620 1.00 70.26 ATOM 29 CA GLU B 62 -9.399 44.100 13.869 1.00 30.08 ATOM 30 CA GLY B 63 -10.714 43.495 17.323 1.00 22.36 ATOM 31 CA LEU B 64 -13.954 44.491 18.925 1.00 46.68 ATOM 32 CA GLY B 65 -14.572 45.210 22.562 1.00 26.63 ATOM 33 CA SER B 66 -16.550 47.540 24.734 1.00 32.31 ATOM 34 CA GLY B 67 -15.832 50.323 27.158 1.00 16.08 ATOM 35 CA VAL B 68 -17.603 52.621 29.552 1.00 32.24 ATOM 36 CA ILE B 69 -17.423 56.375 29.653 1.00 97.52 ATOM 37 CA ILE B 70 -16.371 57.316 33.147 1.00111.05 ATOM 38 CA ASN B 71 -15.941 61.012 32.520 1.00 42.90 ATOM 39 CA ALA B 72 -18.044 62.712 29.902 1.00 31.75 ATOM 40 CA SER B 73 -16.215 65.996 29.905 1.00 31.03 ATOM 41 CA LYS B 74 -12.790 64.446 29.774 1.00 88.43 ATOM 42 CA GLY B 75 -13.911 61.639 27.543 1.00 24.90 ATOM 43 CA TYR B 76 -12.289 58.949 29.620 1.00 66.14 ATOM 44 CA VAL B 77 -13.348 55.455 28.743 1.00 39.93 ATOM 45 CA LEU B 78 -12.590 52.415 30.858 1.00 45.44 ATOM 46 CA THR B 79 -11.820 49.165 29.107 1.00 41.97 ATOM 47 CA ASN B 80 -9.946 45.944 29.550 1.00 54.07 ATOM 48 CA ASN B 81 -6.257 46.020 28.890 1.00 59.55 ATOM 49 CA HIS B 82 -6.512 42.934 26.748 1.00 49.53 ATOM 50 CA VAL B 83 -8.842 44.586 24.326 1.00 48.23 ATOM 51 CA ILE B 84 -6.434 47.533 24.008 1.00120.03 ATOM 52 CA ASN B 85 -3.074 45.767 24.186 1.00147.88 ATOM 53 CA GLN B 86 -2.336 45.054 20.543 1.00 77.56 ATOM 54 CA ALA B 87 -4.074 48.171 19.257 1.00 71.77 ATOM 55 CA GLN B 88 -2.138 50.453 16.994 1.00113.02 ATOM 56 CA LYS B 89 -5.206 52.625 16.670 1.00 32.78 ATOM 57 CA ILE B 90 -8.361 52.804 18.706 1.00 93.26 ATOM 58 CA SER B 91 -11.773 54.080 17.788 1.00 31.34 ATOM 59 CA ILE B 92 -14.831 54.473 19.954 1.00103.40 ATOM 60 CA GLN B 93 -18.365 54.201 18.675 1.00 40.43 ATOM 61 CA LEU B 94 -21.427 55.466 20.464 1.00 49.44 ATOM 62 CA ASN B 95 -24.803 53.809 20.327 1.00 39.23 ATOM 63 CA ASP B 96 -25.972 56.771 18.301 1.00 45.72 ATOM 64 CA GLY B 97 -23.466 55.922 15.623 1.00 30.38 ATOM 65 CA ARG B 98 -21.055 58.740 16.265 1.00 62.42 ATOM 66 CA GLU B 99 -17.457 57.633 16.247 1.00 35.06 ATOM 67 CA PHE B 100 -14.412 59.136 17.871 1.00 45.50 ATOM 68 CA ASP B 101 -10.702 58.489 18.018 1.00 33.40 ATOM 69 CA ALA B 102 -9.163 57.395 21.253 1.00 28.58 ATOM 70 CA LYS B 103 -5.715 57.307 22.734 1.00 98.96 ATOM 71 CA LEU B 104 -4.447 55.073 25.484 1.00 50.14 ATOM 72 CA ILE B 105 -3.985 57.017 28.675 1.00 92.44 ATOM 73 CA GLY B 106 -2.550 54.050 30.503 1.00 24.93 ATOM 74 CA SER B 107 -3.280 50.527 31.571 1.00 96.27 ATOM 75 CA ASP B 108 -1.972 47.654 33.583 1.00105.20 ATOM 76 CA ASP B 109 -1.674 43.960 32.842 1.00 68.61 ATOM 77 CA GLN B 110 -2.082 42.511 36.290 1.00 97.08 ATOM 78 CA SER B 111 -5.619 43.802 36.942 1.00 63.76 ATOM 79 CA ASP B 112 -6.334 44.080 33.213 1.00 71.63 ATOM 80 CA ILE B 113 -7.693 47.620 33.359 1.00 43.10 ATOM 81 CA ALA B 114 -6.944 50.287 30.782 1.00 31.36 ATOM 82 CA LEU B 115 -7.993 53.894 30.418 1.00 94.96 ATOM 83 CA LEU B 116 -8.703 55.538 27.080 1.00 84.98 ATOM 84 CA GLN B 117 -9.441 59.121 26.256 1.00 55.59 ATOM 85 CA ILE B 118 -11.681 60.216 23.447 1.00 41.90 ATOM 86 CA GLN B 119 -10.349 62.913 21.227 1.00 92.63 ATOM 87 CA ASN B 120 -12.625 65.918 20.950 1.00 49.14 ATOM 88 CA PRO B 121 -15.311 64.279 22.981 1.00 62.24 ATOM 89 CA SER B 122 -18.629 66.049 22.647 1.00 36.14 ATOM 90 CA LYS B 123 -22.069 65.576 24.169 1.00 42.60 ATOM 91 CA LEU B 124 -21.094 62.404 25.954 1.00 93.58 ATOM 92 CA THR B 125 -22.973 60.554 28.628 1.00100.72 ATOM 93 CA GLN B 126 -21.251 59.411 31.779 1.00 55.35 ATOM 94 CA ILE B 127 -22.023 56.361 33.842 1.00120.68 ATOM 95 CA ALA B 128 -22.320 56.623 37.599 1.00 30.67 ATOM 96 CA ILE B 129 -20.273 54.211 39.608 1.00 41.81 ATOM 97 CA ALA B 130 -21.666 52.211 42.492 1.00 34.92 ATOM 98 CA ASP B 131 -19.847 50.811 45.483 1.00 36.50 ATOM 99 CA SER B 132 -18.808 47.315 44.516 1.00 36.29 ATOM 100 CA ASP B 133 -18.173 46.449 48.128 1.00 33.56 ATOM 101 CA LYS B 134 -21.891 46.706 48.838 1.00139.25 ATOM 102 CA LEU B 135 -22.816 44.035 46.341 1.00107.52 ATOM 103 CA ARG B 136 -24.133 40.775 47.638 1.00205.02 ATOM 104 CA VAL B 137 -25.058 37.573 45.891 1.00 85.70 ATOM 105 CA GLY B 138 -28.527 37.677 44.459 1.00 25.73 ATOM 106 CA ASP B 139 -28.341 41.292 43.418 1.00 37.23 ATOM 107 CA PHE B 140 -29.572 41.899 39.909 1.00 75.30 ATOM 108 CA ALA B 141 -27.110 42.806 37.215 1.00 35.40 ATOM 109 CA VAL B 142 -27.255 43.850 33.596 1.00 38.60 ATOM 110 CA ALA B 143 -24.367 43.519 31.227 1.00 28.58 ATOM 111 CA VAL B 144 -23.908 45.796 28.278 1.00 33.49 ATOM 112 CA GLY B 145 -21.334 45.342 25.577 1.00 25.19 ATOM 113 CA ASN B 146 -20.917 44.200 22.041 1.00 76.44 ATOM 114 CA PRO B 147 -20.984 40.496 21.751 1.00166.27 ATOM 115 CA PHE B 148 -19.757 39.213 18.426 1.00 75.20 ATOM 116 CA GLY B 149 -19.587 42.816 17.364 1.00 31.88 ATOM 117 CA LEU B 150 -23.311 42.696 16.902 1.00 58.98 ATOM 118 CA GLY B 151 -23.804 46.124 18.385 1.00 38.98 ATOM 119 CA GLN B 152 -24.734 47.308 21.817 1.00114.78 ATOM 120 CA THR B 153 -26.500 44.475 23.539 1.00 50.99 ATOM 121 CA ALA B 154 -27.879 44.187 27.020 1.00 34.64 ATOM 122 CA THR B 155 -28.234 40.970 28.962 1.00 32.03 ATOM 123 CA SER B 156 -29.625 40.396 32.406 1.00 85.63 ATOM 124 CA GLY B 157 -28.684 38.161 35.298 1.00 24.13 ATOM 125 CA ILE B 158 -27.808 38.221 38.983 1.00 95.64 ATOM 126 CA VAL B 159 -24.544 38.422 40.842 1.00 48.41 ATOM 127 CA SER B 160 -23.575 34.800 41.233 1.00 42.38 ATOM 128 CA ALA B 161 -20.616 35.364 43.489 1.00 38.29 ATOM 129 CA LEU B 162 -17.993 37.854 44.491 1.00 94.61 ATOM 130 CA GLY B 163 -14.419 37.897 45.578 1.00 33.28 ATOM 131 CA ARG B 164 -13.367 35.077 43.429 1.00111.35 ATOM 132 CA SER B 165 -9.895 34.399 42.207 1.00 75.06 ATOM 133 CA GLY B 166 -7.644 31.517 41.461 1.00 34.37 ATOM 134 CA LEU B 167 -9.023 31.583 37.966 1.00 48.95 ATOM 135 CA ASN B 168 -5.485 32.397 36.937 1.00 59.63 ATOM 136 CA LEU B 169 -7.001 34.635 34.330 1.00 50.38 ATOM 137 CA GLU B 170 -5.251 37.688 35.707 1.00 98.77 ATOM 138 CA GLY B 171 -2.384 38.537 38.034 1.00 41.48 ATOM 139 CA LEU B 172 -4.771 40.179 40.432 1.00139.49 ATOM 140 CA GLU B 173 -8.243 38.837 40.487 1.00 78.53 ATOM 141 CA ASN B 174 -11.383 39.600 42.410 1.00 98.81 ATOM 142 CA PHE B 175 -14.008 38.930 39.924 1.00 76.86 ATOM 143 CA ILE B 176 -17.639 39.500 40.464 1.00 60.35 ATOM 144 CA GLN B 177 -19.289 36.490 38.929 1.00 57.65 ATOM 145 CA THR B 178 -22.480 36.916 36.960 1.00134.72 ATOM 146 CA ASP B 179 -24.961 34.756 35.094 1.00 66.76 ATOM 147 CA ALA B 180 -25.673 37.534 32.639 1.00 46.16 ATOM 148 CA SER B 181 -24.751 36.343 29.212 1.00 44.53 ATOM 149 CA ILE B 182 -21.315 37.572 28.360 1.00111.46 ATOM 150 CA ASN B 183 -19.601 36.595 25.177 1.00103.70 ATOM 151 CA ARG B 184 -16.564 37.530 23.152 1.00348.79 ATOM 152 CA GLY B 185 -17.199 41.238 22.423 1.00178.51 ATOM 153 CA ASN B 186 -18.266 41.890 26.015 1.00 88.37 ATOM 154 CA ALA B 187 -14.840 42.687 27.437 1.00 96.84 ATOM 155 CA GLY B 188 -14.477 46.221 28.690 1.00 30.10 ATOM 156 CA GLY B 189 -18.242 46.416 28.807 1.00 24.13 ATOM 157 CA ALA B 190 -20.241 47.462 31.789 1.00 45.69 ATOM 158 CA LEU B 191 -22.029 45.422 34.372 1.00115.35 ATOM 159 CA LEU B 192 -24.746 47.540 35.895 1.00120.60 ATOM 160 CA ASN B 193 -27.077 47.285 38.835 1.00 68.64 ATOM 161 CA LEU B 194 -30.790 48.012 38.725 1.00 57.62 ATOM 162 CA ASN B 195 -29.803 51.588 39.058 1.00 65.95 ATOM 163 CA GLY B 196 -27.838 52.638 36.018 1.00 63.30 ATOM 164 CA GLU B 197 -24.739 52.453 38.251 1.00 69.99 ATOM 165 CA LEU B 198 -21.636 50.544 37.230 1.00100.95 ATOM 166 CA ILE B 199 -20.842 47.549 39.410 1.00 82.20 ATOM 167 CA GLY B 200 -17.905 46.269 37.379 1.00 33.02 ATOM 168 CA ILE B 201 -16.241 45.836 34.008 1.00 99.88 ATOM 169 CA ASN B 202 -16.818 42.482 32.351 1.00 82.13 ATOM 170 CA THR B 203 -13.376 40.954 31.929 1.00 83.70 ATOM 171 CA ALA B 204 -13.775 37.288 31.123 1.00 58.74 ATOM 172 CA ILE B 205 -15.839 34.149 30.845 1.00 95.35 ATOM 173 CA LEU B 206 -15.434 30.490 31.615 1.00 64.60 ATOM 174 CA ALA B 207 -16.858 28.438 28.823 1.00 42.77 ATOM 175 CA PRO B 208 -15.813 25.223 27.292 1.00 68.59 ATOM 176 CA GLY B 209 -17.635 26.055 24.075 1.00 28.36 ATOM 177 CA GLY B 210 -16.242 29.524 23.859 1.00 23.57 ATOM 178 CA GLY B 211 -19.816 30.661 24.232 1.00 23.73 ATOM 179 CA SER B 212 -21.487 31.975 27.350 1.00 59.02 ATOM 180 CA VAL B 213 -22.010 29.188 29.878 1.00 61.65 ATOM 181 CA GLY B 214 -23.536 31.605 32.319 1.00 39.06 ATOM 182 CA ILE B 215 -20.340 32.010 34.252 1.00 65.67 ATOM 183 CA GLY B 216 -18.873 35.430 33.630 1.00 24.18 ATOM 184 CA PHE B 217 -16.423 37.506 35.593 1.00 54.12 ATOM 185 CA ALA B 218 -16.080 41.233 35.999 1.00 33.04 ATOM 186 CA ILE B 219 -13.655 43.578 37.703 1.00 69.97 ATOM 187 CA PRO B 220 -15.410 45.327 40.477 1.00 82.21 ATOM 188 CA SER B 221 -16.357 48.954 40.030 1.00 39.57 ATOM 189 CA ASN B 222 -14.325 49.981 42.964 1.00 60.96 ATOM 190 CA MET B 223 -11.704 48.141 41.126 1.00104.86 ATOM 191 CA ALA B 224 -11.835 50.022 37.899 1.00 52.35 ATOM 192 CA ARG B 225 -12.682 53.277 39.575 1.00 99.87 ATOM 193 CA THR B 226 -9.637 53.941 41.625 1.00 62.42 ATOM 194 CA LEU B 227 -7.361 52.096 39.191 1.00112.19 ATOM 195 CA ALA B 228 -8.697 54.310 36.470 1.00 46.13 ATOM 196 CA GLN B 229 -8.318 57.301 38.672 1.00 81.08 ATOM 197 CA GLN B 230 -4.599 57.410 38.990 1.00106.41 ATOM 198 CA LEU B 231 -4.397 56.487 35.359 1.00 57.06 ATOM 199 CA ILE B 232 -5.561 60.022 34.983 1.00127.04 ATOM 200 CA ASP B 233 -4.281 61.113 38.456 1.00183.63 ATOM 201 CA PHE B 234 -2.601 60.883 41.002 1.00173.25 ATOM 202 CA GLY B 235 -0.811 58.527 38.706 1.00 57.62 TER