HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 35 REMARK 465 SER C 36 REMARK 465 GLN C 37 REMARK 465 GLY C 38 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 ILE C 41 REMARK 465 PRO C 42 REMARK 465 GLU C 43 REMARK 465 GLU C 44 REMARK 465 PHE C 45 REMARK 465 LYS C 46 REMARK 465 LYS C 47 REMARK 465 PHE C 48 REMARK 465 PHE C 49 REMARK 465 GLY C 50 REMARK 465 ASP C 51 REMARK 465 ASP C 52 REMARK 465 LEU C 53 REMARK 465 PRO C 54 REMARK 465 ASP C 55 REMARK 465 GLN C 56 REMARK 465 PRO C 57 DBREF 4A8A C 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 C 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 C 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 C 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 C 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 C 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 C 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 C 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 C 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 C 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 C 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 C 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 C 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 C 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 C 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 C 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 C 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 C 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 C 225 ILE ASP PHE GLY ATOM 1 CA PRO C 11 -44.451 40.339 42.695 1.00 85.77 ATOM 2 CA LEU C 12 -45.751 40.166 39.166 1.00111.04 ATOM 3 CA PRO C 13 -49.029 38.649 38.532 1.00 92.64 ATOM 4 CA SER C 14 -48.856 34.960 38.051 1.00104.33 ATOM 5 CA LEU C 15 -48.514 33.908 34.451 1.00172.76 ATOM 6 CA ALA C 16 -50.487 30.766 35.006 1.00 45.64 ATOM 7 CA PRO C 17 -53.786 32.466 35.350 1.00 70.33 ATOM 8 CA MET C 18 -53.347 34.364 32.104 1.00 59.62 ATOM 9 CA LEU C 19 -51.898 31.357 30.358 1.00117.94 ATOM 10 CA GLU C 20 -54.720 29.017 31.206 1.00 34.97 ATOM 11 CA LYS C 21 -57.217 30.971 29.179 1.00 62.35 ATOM 12 CA VAL C 22 -54.893 31.780 26.266 1.00 52.23 ATOM 13 CA LEU C 23 -53.035 28.529 25.718 1.00114.97 ATOM 14 CA PRO C 24 -55.712 26.672 23.861 1.00 65.40 ATOM 15 CA ALA C 25 -55.533 29.342 21.178 1.00 29.75 ATOM 16 CA VAL C 26 -52.009 28.334 20.239 1.00 31.39 ATOM 17 CA VAL C 27 -51.722 25.159 18.252 1.00 35.69 ATOM 18 CA SER C 28 -49.073 22.918 16.802 1.00 88.05 ATOM 19 CA VAL C 29 -48.952 22.480 13.090 1.00123.49 ATOM 20 CA ARG C 30 -47.887 19.242 11.542 1.00 71.15 ATOM 21 CA VAL C 31 -46.737 19.061 7.985 1.00 41.93 ATOM 22 CA GLU C 32 -46.015 16.290 5.563 1.00 90.21 ATOM 23 CA GLY C 33 -44.994 16.446 1.966 1.00 24.10 ATOM 24 CA THR C 34 -42.347 15.790 -0.602 1.00118.34 ATOM 25 CA ALA C 58 -40.141 13.238 -3.428 1.00 25.71 ATOM 26 CA GLN C 59 -39.118 11.568 -0.213 1.00 60.73 ATOM 27 CA PRO C 60 -41.562 12.110 2.533 1.00 60.42 ATOM 28 CA PHE C 61 -40.634 14.414 5.344 1.00 52.56 ATOM 29 CA GLU C 62 -42.458 15.594 8.393 1.00 24.44 ATOM 30 CA GLY C 63 -42.140 19.059 9.783 1.00 16.45 ATOM 31 CA LEU C 64 -43.297 20.566 13.008 1.00101.31 ATOM 32 CA GLY C 65 -44.310 24.131 13.696 1.00 20.94 ATOM 33 CA SER C 66 -46.890 26.149 15.548 1.00 27.78 ATOM 34 CA GLY C 67 -49.767 28.429 14.705 1.00 16.64 ATOM 35 CA VAL C 68 -52.292 30.632 16.405 1.00 91.67 ATOM 36 CA ILE C 69 -55.998 30.526 15.983 1.00 72.77 ATOM 37 CA ILE C 70 -57.176 33.926 14.860 1.00 60.41 ATOM 38 CA ASN C 71 -60.833 33.170 14.199 1.00 45.33 ATOM 39 CA ALA C 72 -62.651 30.503 16.113 1.00 37.88 ATOM 40 CA SER C 73 -65.706 30.228 13.998 1.00 31.42 ATOM 41 CA LYS C 74 -63.857 30.152 10.753 1.00 83.81 ATOM 42 CA GLY C 75 -60.979 28.183 12.141 1.00 24.75 ATOM 43 CA TYR C 76 -58.344 30.466 10.696 1.00 66.43 ATOM 44 CA VAL C 77 -54.867 29.765 11.965 1.00 41.97 ATOM 45 CA LEU C 78 -51.902 32.024 11.356 1.00 48.71 ATOM 46 CA THR C 79 -48.507 30.487 10.753 1.00146.74 ATOM 47 CA ASN C 80 -45.214 31.137 9.101 1.00 67.05 ATOM 48 CA ASN C 81 -45.071 30.518 5.405 1.00 46.66 ATOM 49 CA HIS C 82 -41.898 28.534 5.749 1.00 51.41 ATOM 50 CA VAL C 83 -43.506 25.964 7.948 1.00 61.09 ATOM 51 CA ILE C 84 -46.343 25.502 5.425 1.00119.00 ATOM 52 CA ASN C 85 -44.455 25.854 2.137 1.00150.57 ATOM 53 CA GLN C 86 -43.523 22.240 1.401 1.00 83.02 ATOM 54 CA ALA C 87 -46.625 20.787 3.030 1.00 68.28 ATOM 55 CA GLN C 88 -48.659 18.454 0.912 1.00104.40 ATOM 56 CA LYS C 89 -50.973 17.918 3.861 1.00 34.10 ATOM 57 CA ILE C 90 -51.344 19.892 7.040 1.00 42.69 ATOM 58 CA SER C 91 -52.803 18.969 10.368 1.00 68.23 ATOM 59 CA ILE C 92 -53.304 21.037 13.481 1.00 85.04 ATOM 60 CA GLN C 93 -53.252 19.730 17.008 1.00 42.75 ATOM 61 CA LEU C 94 -54.799 21.420 19.987 1.00 84.88 ATOM 62 CA ASN C 95 -53.392 21.381 23.490 1.00 45.33 ATOM 63 CA ASP C 96 -56.325 19.207 24.434 1.00 54.79 ATOM 64 CA GLY C 97 -55.142 16.588 22.011 1.00 32.81 ATOM 65 CA ARG C 98 -57.820 17.134 19.425 1.00 87.88 ATOM 66 CA GLU C 99 -56.527 17.135 15.888 1.00 39.23 ATOM 67 CA PHE C 100 -57.921 18.619 12.716 1.00 40.12 ATOM 68 CA ASP C 101 -57.016 18.883 9.075 1.00 28.06 ATOM 69 CA ALA C 102 -56.141 22.210 7.585 1.00 35.11 ATOM 70 CA LYS C 103 -55.940 23.742 4.165 1.00 78.90 ATOM 71 CA LEU C 104 -53.776 26.607 3.035 1.00 52.26 ATOM 72 CA ILE C 105 -55.852 29.700 2.532 1.00104.03 ATOM 73 CA GLY C 106 -52.936 31.693 1.223 1.00 26.66 ATOM 74 CA SER C 107 -49.532 32.961 2.166 1.00 95.46 ATOM 75 CA ASP C 108 -46.749 35.212 1.085 1.00101.00 ATOM 76 CA ASP C 109 -43.012 34.738 0.902 1.00 65.85 ATOM 77 CA GLN C 110 -41.681 38.171 1.579 1.00148.56 ATOM 78 CA SER C 111 -43.314 38.694 4.989 1.00 65.24 ATOM 79 CA ASP C 112 -43.390 34.940 5.622 1.00 68.72 ATOM 80 CA ILE C 113 -47.021 34.910 6.759 1.00 99.19 ATOM 81 CA ALA C 114 -49.435 32.118 5.894 1.00 35.38 ATOM 82 CA LEU C 115 -53.088 31.545 6.668 1.00 64.88 ATOM 83 CA LEU C 116 -54.590 28.142 7.260 1.00 76.48 ATOM 84 CA GLN C 117 -58.141 27.062 7.809 1.00 35.13 ATOM 85 CA ILE C 118 -59.163 24.155 9.964 1.00 42.79 ATOM 86 CA GLN C 119 -61.632 21.751 8.490 1.00 91.54 ATOM 87 CA ASN C 120 -64.767 21.353 10.567 1.00 59.10 ATOM 88 CA PRO C 121 -63.400 23.479 13.315 1.00 65.35 ATOM 89 CA SER C 122 -65.321 23.001 16.498 1.00 82.49 ATOM 90 CA LYS C 123 -65.160 24.489 19.984 1.00 43.99 ATOM 91 CA LEU C 124 -62.056 26.506 19.288 1.00 84.57 ATOM 92 CA THR C 125 -60.570 29.262 21.371 1.00 94.79 ATOM 93 CA GLN C 126 -59.268 32.395 19.768 1.00 61.15 ATOM 94 CA ILE C 127 -56.456 34.659 20.684 1.00 99.08 ATOM 95 CA ALA C 128 -57.006 38.384 20.958 1.00 26.70 ATOM 96 CA ILE C 129 -54.719 40.622 18.985 1.00 90.96 ATOM 97 CA ALA C 130 -52.867 43.484 20.610 1.00 31.94 ATOM 98 CA ASP C 131 -51.602 46.563 18.857 1.00 44.01 ATOM 99 CA SER C 132 -47.969 45.879 18.093 1.00 33.15 ATOM 100 CA ASP C 133 -47.337 49.547 17.486 1.00 31.79 ATOM 101 CA LYS C 134 -47.836 50.171 21.189 1.00 90.64 ATOM 102 CA LEU C 135 -45.071 47.803 22.238 1.00 58.92 ATOM 103 CA ARG C 136 -42.040 49.312 23.892 1.00 70.60 ATOM 104 CA VAL C 137 -38.790 47.729 24.879 1.00 82.17 ATOM 105 CA GLY C 138 -38.919 46.220 28.317 1.00 23.75 ATOM 106 CA ASP C 139 -42.430 44.937 27.916 1.00 28.94 ATOM 107 CA PHE C 140 -42.954 41.398 29.112 1.00 48.90 ATOM 108 CA ALA C 141 -43.537 38.722 26.528 1.00 33.98 ATOM 109 CA VAL C 142 -44.331 35.056 26.588 1.00101.47 ATOM 110 CA ALA C 143 -43.690 32.743 23.696 1.00 33.31 ATOM 111 CA VAL C 144 -45.770 29.686 23.048 1.00 28.99 ATOM 112 CA GLY C 145 -45.082 27.029 20.478 1.00 23.28 ATOM 113 CA ASN C 146 -43.640 23.609 20.289 1.00 73.64 ATOM 114 CA PRO C 147 -39.954 23.487 20.378 1.00 68.65 ATOM 115 CA PHE C 148 -38.394 20.276 19.178 1.00 67.02 ATOM 116 CA GLY C 149 -41.931 19.012 18.863 1.00 27.71 ATOM 117 CA LEU C 150 -42.074 18.454 22.610 1.00 95.33 ATOM 118 CA GLY C 151 -45.580 19.816 22.911 1.00 36.10 ATOM 119 CA GLN C 152 -46.925 23.186 23.803 1.00 56.49 ATOM 120 CA THR C 153 -44.231 25.025 25.669 1.00 33.56 ATOM 121 CA ALA C 154 -44.289 28.471 27.151 1.00 34.22 ATOM 122 CA THR C 155 -41.218 30.582 27.669 1.00 98.63 ATOM 123 CA SER C 156 -40.904 34.033 29.130 1.00 36.87 ATOM 124 CA GLY C 157 -38.852 37.100 28.370 1.00 26.19 ATOM 125 CA ILE C 158 -39.111 40.783 27.530 1.00 63.41 ATOM 126 CA VAL C 159 -39.258 42.669 24.271 1.00 47.16 ATOM 127 CA SER C 160 -35.618 43.270 23.477 1.00 45.52 ATOM 128 CA ALA C 161 -36.111 45.501 20.481 1.00 36.93 ATOM 129 CA LEU C 162 -38.546 46.445 17.771 1.00 93.28 ATOM 130 CA GLY C 163 -38.405 47.546 14.197 1.00 31.97 ATOM 131 CA ARG C 164 -35.446 45.427 13.401 1.00105.76 ATOM 132 CA SER C 165 -34.399 44.485 9.923 1.00149.68 ATOM 133 CA GLY C 166 -31.431 43.983 7.715 1.00 44.26 ATOM 134 CA LEU C 167 -31.375 40.465 9.053 1.00 50.45 ATOM 135 CA ASN C 168 -31.937 39.424 5.471 1.00 63.79 ATOM 136 CA LEU C 169 -34.058 36.641 6.848 1.00 48.95 ATOM 137 CA GLU C 170 -37.101 37.846 4.963 1.00102.70 ATOM 138 CA GLY C 171 -37.847 40.132 2.044 1.00 34.76 ATOM 139 CA LEU C 172 -39.878 42.338 4.317 1.00 70.61 ATOM 140 CA GLU C 173 -38.767 42.486 7.875 1.00 98.69 ATOM 141 CA ASN C 174 -39.769 44.291 11.033 1.00109.72 ATOM 142 CA PHE C 175 -39.082 41.830 13.672 1.00 91.89 ATOM 143 CA ILE C 176 -39.843 42.351 17.265 1.00153.21 ATOM 144 CA GLN C 177 -36.923 40.861 19.076 1.00146.73 ATOM 145 CA THR C 178 -37.395 38.910 22.248 1.00 46.23 ATOM 146 CA ASP C 179 -35.182 37.120 24.753 1.00 65.69 ATOM 147 CA ALA C 180 -37.854 34.492 25.344 1.00 36.21 ATOM 148 CA SER C 181 -36.426 31.147 24.448 1.00 42.14 ATOM 149 CA ILE C 182 -37.395 30.312 20.928 1.00 41.42 ATOM 150 CA ASN C 183 -36.144 27.181 19.285 1.00 43.83 ATOM 151 CA ARG C 184 -36.887 25.201 16.209 1.00118.57 ATOM 152 CA GLY C 185 -40.544 24.308 16.129 1.00 22.92 ATOM 153 CA ASN C 186 -41.412 27.698 17.561 1.00 51.31 ATOM 154 CA ALA C 187 -42.134 29.158 14.169 1.00104.72 ATOM 155 CA GLY C 188 -45.692 30.194 13.596 1.00 25.49 ATOM 156 CA GLY C 189 -46.092 30.246 17.349 1.00 21.78 ATOM 157 CA ALA C 190 -47.413 33.133 19.328 1.00 44.24 ATOM 158 CA LEU C 191 -45.675 35.826 21.276 1.00 61.57 ATOM 159 CA LEU C 192 -48.028 37.132 23.908 1.00 95.63 ATOM 160 CA ASN C 193 -48.155 40.022 26.305 1.00 58.82 ATOM 161 CA LEU C 194 -49.143 39.778 29.946 1.00 55.64 ATOM 162 CA ASN C 195 -52.717 40.196 28.812 1.00 48.72 ATOM 163 CA GLY C 196 -52.386 37.069 26.747 1.00 24.13 ATOM 164 CA GLU C 197 -52.918 39.168 23.657 1.00 42.88 ATOM 165 CA LEU C 198 -50.937 38.377 20.536 1.00145.81 ATOM 166 CA ILE C 199 -48.001 40.729 20.033 1.00 97.55 ATOM 167 CA GLY C 200 -46.453 38.824 17.135 1.00 31.59 ATOM 168 CA ILE C 201 -45.742 35.517 15.432 1.00 92.52 ATOM 169 CA ASN C 202 -42.343 34.028 16.190 1.00 65.84 ATOM 170 CA THR C 203 -40.575 33.660 12.856 1.00 82.37 ATOM 171 CA ALA C 204 -36.896 33.068 13.483 1.00 54.37 ATOM 172 CA ILE C 205 -33.850 33.286 15.675 1.00 50.28 ATOM 173 CA LEU C 206 -30.176 33.984 15.390 1.00 48.12 ATOM 174 CA ALA C 207 -28.114 31.283 16.964 1.00 41.76 ATOM 175 CA PRO C 208 -24.725 30.019 16.103 1.00 66.50 ATOM 176 CA GLY C 209 -25.456 26.752 17.866 1.00 29.29 ATOM 177 CA GLY C 210 -28.823 26.344 16.285 1.00 22.89 ATOM 178 CA GLY C 211 -30.180 26.618 19.790 1.00 23.04 ATOM 179 CA SER C 212 -31.767 29.640 21.395 1.00 52.09 ATOM 180 CA VAL C 213 -29.191 32.319 22.127 1.00 60.66 ATOM 181 CA GLY C 214 -31.859 34.561 23.535 1.00 34.60 ATOM 182 CA ILE C 215 -32.188 36.462 20.301 1.00 95.68 ATOM 183 CA GLY C 216 -35.507 35.714 18.676 1.00 21.18 ATOM 184 CA PHE C 217 -37.559 37.579 16.123 1.00 51.19 ATOM 185 CA ALA C 218 -41.273 37.734 15.521 1.00 34.92 ATOM 186 CA ILE C 219 -43.556 39.424 13.030 1.00116.17 ATOM 187 CA PRO C 220 -45.585 41.977 14.777 1.00 86.85 ATOM 188 CA SER C 221 -49.236 41.254 15.355 1.00 95.49 ATOM 189 CA ASN C 222 -50.276 44.262 13.423 1.00 64.41 ATOM 190 CA MET C 223 -48.244 42.575 10.855 1.00108.27 ATOM 191 CA ALA C 224 -49.917 39.235 10.861 1.00 49.81 ATOM 192 CA ARG C 225 -53.367 40.537 11.449 1.00150.72 ATOM 193 CA THR C 226 -53.928 42.705 8.461 1.00 63.50 ATOM 194 CA LEU C 227 -51.795 40.399 6.312 1.00 97.27 ATOM 195 CA ALA C 228 -53.955 37.545 7.440 1.00 49.74 ATOM 196 CA GLN C 229 -57.044 39.574 6.853 1.00 85.83 ATOM 197 CA GLN C 230 -56.773 39.951 3.117 1.00178.95 ATOM 198 CA LEU C 231 -55.753 36.361 2.924 1.00 58.98 ATOM 199 CA ILE C 232 -59.268 35.731 3.999 1.00160.89 ATOM 200 CA ASP C 233 -60.520 38.988 2.425 1.00173.38 ATOM 201 CA PHE C 234 -60.296 41.195 0.491 1.00154.01 ATOM 202 CA GLY C 235 -57.082 39.680 -0.739 1.00 77.64 TER