HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA D 35 REMARK 465 SER D 36 REMARK 465 GLN D 37 REMARK 465 GLY D 38 REMARK 465 GLN D 39 REMARK 465 LYS D 40 REMARK 465 ILE D 41 REMARK 465 PRO D 42 REMARK 465 GLU D 43 REMARK 465 GLU D 44 REMARK 465 PHE D 45 REMARK 465 LYS D 46 REMARK 465 LYS D 47 REMARK 465 PHE D 48 REMARK 465 PHE D 49 REMARK 465 GLY D 50 REMARK 465 ASP D 51 REMARK 465 ASP D 52 REMARK 465 LEU D 53 REMARK 465 PRO D 54 REMARK 465 ASP D 55 REMARK 465 GLN D 56 REMARK 465 PRO D 57 DBREF 4A8A D 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 D 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 D 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 D 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 D 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 D 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 D 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 D 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 D 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 D 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 D 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 D 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 D 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 D 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 D 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 D 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 D 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 D 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 D 225 ILE ASP PHE GLY ATOM 1 CA PRO D 11 40.404 -40.261 39.695 1.00132.62 ATOM 2 CA LEU D 12 40.618 -42.064 42.976 1.00 98.32 ATOM 3 CA PRO D 13 38.243 -41.986 45.828 1.00178.05 ATOM 4 CA SER D 14 37.126 -40.252 47.624 1.00126.73 ATOM 5 CA LEU D 15 36.169 -36.595 47.522 1.00107.90 ATOM 6 CA ALA D 16 33.100 -37.064 49.647 1.00 40.74 ATOM 7 CA PRO D 17 34.924 -37.359 52.888 1.00 72.64 ATOM 8 CA MET D 18 36.886 -34.192 52.271 1.00 35.91 ATOM 9 CA LEU D 19 33.812 -32.433 50.974 1.00 46.28 ATOM 10 CA GLU D 20 31.596 -33.283 53.886 1.00 83.75 ATOM 11 CA LYS D 21 33.628 -31.202 56.278 1.00 80.90 ATOM 12 CA VAL D 22 34.410 -28.329 53.893 1.00109.58 ATOM 13 CA LEU D 23 31.091 -27.718 52.192 1.00115.36 ATOM 14 CA PRO D 24 29.403 -25.858 54.978 1.00 65.73 ATOM 15 CA ALA D 25 32.074 -23.198 54.577 1.00 37.15 ATOM 16 CA VAL D 26 30.890 -22.290 51.110 1.00 96.13 ATOM 17 CA VAL D 27 27.774 -20.233 51.003 1.00121.18 ATOM 18 CA SER D 28 25.350 -18.805 48.485 1.00 41.39 ATOM 19 CA VAL D 29 24.940 -15.091 48.333 1.00105.53 ATOM 20 CA ARG D 30 21.655 -13.468 47.471 1.00100.49 ATOM 21 CA VAL D 31 21.454 -9.862 46.459 1.00 44.12 ATOM 22 CA GLU D 32 18.744 -7.358 45.766 1.00 89.80 ATOM 23 CA GLY D 33 19.033 -3.791 44.676 1.00 25.89 ATOM 24 CA THR D 34 18.266 -0.974 42.286 1.00 47.00 ATOM 25 CA ALA D 58 15.219 1.480 40.493 1.00 56.51 ATOM 26 CA GLN D 59 13.038 -1.583 40.026 1.00194.34 ATOM 27 CA PRO D 60 14.193 -4.387 42.131 1.00149.62 ATOM 28 CA PHE D 61 16.267 -7.216 40.759 1.00 53.64 ATOM 29 CA GLU D 62 17.780 -10.233 42.392 1.00 32.92 ATOM 30 CA GLY D 63 21.137 -11.774 41.706 1.00 28.05 ATOM 31 CA LEU D 64 22.667 -14.952 42.973 1.00114.54 ATOM 32 CA GLY D 65 26.284 -15.777 43.619 1.00 24.20 ATOM 33 CA SER D 66 28.441 -17.613 46.099 1.00 28.32 ATOM 34 CA GLY D 67 30.899 -16.768 48.822 1.00 15.37 ATOM 35 CA VAL D 68 33.216 -18.493 51.220 1.00 88.78 ATOM 36 CA ILE D 69 33.381 -17.904 54.898 1.00138.15 ATOM 37 CA ILE D 70 36.891 -16.982 55.882 1.00123.95 ATOM 38 CA ASN D 71 36.272 -16.215 59.546 1.00 58.35 ATOM 39 CA ALA D 72 33.704 -18.129 61.518 1.00 41.22 ATOM 40 CA SER D 73 33.583 -15.996 64.580 1.00 33.96 ATOM 41 CA LYS D 74 33.566 -12.751 62.718 1.00 92.05 ATOM 42 CA GLY D 75 31.368 -14.099 59.990 1.00 26.64 ATOM 43 CA TYR D 76 33.516 -12.716 57.209 1.00 78.85 ATOM 44 CA VAL D 77 32.575 -13.997 53.799 1.00 42.52 ATOM 45 CA LEU D 78 34.663 -13.442 50.703 1.00 46.79 ATOM 46 CA THR D 79 32.929 -12.893 47.406 1.00 41.05 ATOM 47 CA ASN D 80 33.370 -11.240 44.065 1.00 50.44 ATOM 48 CA ASN D 81 32.794 -7.533 43.919 1.00 36.69 ATOM 49 CA HIS D 82 30.642 -7.906 40.856 1.00 44.06 ATOM 50 CA VAL D 83 28.192 -10.086 42.676 1.00 42.56 ATOM 51 CA ILE D 84 27.934 -7.509 45.469 1.00119.11 ATOM 52 CA ASN D 85 28.248 -4.234 43.592 1.00 72.12 ATOM 53 CA GLN D 86 24.625 -3.318 42.893 1.00 71.36 ATOM 54 CA ALA D 87 23.213 -4.956 46.006 1.00 65.68 ATOM 55 CA GLN D 88 21.187 -2.801 48.338 1.00 53.38 ATOM 56 CA LYS D 89 20.671 -5.773 50.610 1.00 30.30 ATOM 57 CA ILE D 90 22.688 -8.928 50.946 1.00 86.69 ATOM 58 CA SER D 91 21.652 -12.270 52.335 1.00 28.92 ATOM 59 CA ILE D 92 23.726 -15.361 52.830 1.00 70.93 ATOM 60 CA GLN D 93 22.385 -18.869 52.939 1.00 41.91 ATOM 61 CA LEU D 94 24.174 -21.876 54.294 1.00 92.17 ATOM 62 CA ASN D 95 23.901 -25.341 52.847 1.00 42.80 ATOM 63 CA ASP D 96 21.957 -26.260 55.959 1.00 50.82 ATOM 64 CA GLY D 97 19.260 -23.837 54.938 1.00 31.34 ATOM 65 CA ARG D 98 19.969 -21.233 57.565 1.00 69.91 ATOM 66 CA GLU D 99 19.889 -17.703 56.252 1.00 45.26 ATOM 67 CA PHE D 100 21.583 -14.562 57.475 1.00 62.57 ATOM 68 CA ASP D 101 21.831 -10.947 56.457 1.00 35.86 ATOM 69 CA ALA D 102 25.183 -9.484 55.578 1.00 32.07 ATOM 70 CA LYS D 103 26.773 -6.076 55.227 1.00 85.89 ATOM 71 CA LEU D 104 29.557 -5.141 52.882 1.00 67.39 ATOM 72 CA ILE D 105 32.762 -4.488 54.739 1.00 85.61 ATOM 73 CA GLY D 106 34.596 -3.313 51.662 1.00 28.74 ATOM 74 CA SER D 107 35.611 -4.307 48.187 1.00 64.46 ATOM 75 CA ASP D 108 37.517 -3.166 45.218 1.00136.07 ATOM 76 CA ASP D 109 36.933 -3.141 41.491 1.00 66.08 ATOM 77 CA GLN D 110 40.370 -3.852 40.103 1.00 89.81 ATOM 78 CA SER D 111 40.853 -7.294 41.610 1.00 64.13 ATOM 79 CA ASP D 112 37.109 -7.839 41.955 1.00 72.34 ATOM 80 CA ILE D 113 37.256 -8.966 45.572 1.00 50.28 ATOM 81 CA ALA D 114 34.680 -8.028 48.183 1.00 35.25 ATOM 82 CA LEU D 115 34.366 -8.757 51.877 1.00 96.59 ATOM 83 CA LEU D 116 31.033 -9.335 53.561 1.00 47.79 ATOM 84 CA GLN D 117 30.082 -9.674 57.183 1.00131.39 ATOM 85 CA ILE D 118 27.343 -11.939 58.460 1.00120.42 ATOM 86 CA GLN D 119 25.145 -10.400 61.071 1.00 61.03 ATOM 87 CA ASN D 120 24.719 -12.623 64.108 1.00167.22 ATOM 88 CA PRO D 121 26.868 -15.284 62.557 1.00271.78 ATOM 89 CA SER D 122 26.423 -18.297 64.901 1.00130.48 ATOM 90 CA LYS D 123 27.730 -21.836 64.423 1.00 61.68 ATOM 91 CA LEU D 124 29.674 -21.235 61.262 1.00 93.90 ATOM 92 CA THR D 125 32.320 -23.402 59.686 1.00 99.50 ATOM 93 CA GLN D 126 35.340 -21.841 58.099 1.00 72.66 ATOM 94 CA ILE D 127 37.473 -22.715 55.166 1.00 95.92 ATOM 95 CA ALA D 128 41.196 -23.084 55.543 1.00 31.55 ATOM 96 CA ILE D 129 43.264 -21.200 53.038 1.00 40.00 ATOM 97 CA ALA D 130 46.080 -22.780 51.074 1.00 38.38 ATOM 98 CA ASP D 131 49.116 -21.118 49.569 1.00 35.97 ATOM 99 CA SER D 132 48.201 -20.330 45.989 1.00 79.65 ATOM 100 CA ASP D 133 51.817 -19.843 45.062 1.00 34.74 ATOM 101 CA LYS D 134 52.405 -23.529 45.693 1.00 69.89 ATOM 102 CA LEU D 135 49.862 -24.532 43.051 1.00 57.12 ATOM 103 CA ARG D 136 51.175 -26.340 40.009 1.00115.86 ATOM 104 CA VAL D 137 49.395 -27.224 36.825 1.00102.10 ATOM 105 CA GLY D 138 47.892 -30.644 37.107 1.00 32.59 ATOM 106 CA ASP D 139 46.801 -30.217 40.693 1.00 42.38 ATOM 107 CA PHE D 140 43.245 -31.316 41.262 1.00152.86 ATOM 108 CA ALA D 141 40.659 -28.731 42.096 1.00 31.45 ATOM 109 CA VAL D 142 37.037 -28.756 43.113 1.00 35.01 ATOM 110 CA ALA D 143 34.741 -25.842 42.569 1.00 27.32 ATOM 111 CA VAL D 144 31.812 -25.168 44.815 1.00 29.69 ATOM 112 CA GLY D 145 29.144 -22.568 44.261 1.00 21.23 ATOM 113 CA ASN D 146 25.618 -22.225 43.068 1.00 65.25 ATOM 114 CA PRO D 147 25.318 -22.461 39.381 1.00149.53 ATOM 115 CA PHE D 148 22.028 -21.218 38.020 1.00 68.24 ATOM 116 CA GLY D 149 20.949 -20.835 41.613 1.00 24.57 ATOM 117 CA LEU D 150 20.361 -24.551 41.790 1.00 88.26 ATOM 118 CA GLY D 151 21.958 -24.857 45.194 1.00 31.64 ATOM 119 CA GLN D 152 25.340 -25.884 46.472 1.00 45.19 ATOM 120 CA THR D 153 27.033 -27.726 43.656 1.00 32.65 ATOM 121 CA ALA D 154 30.473 -29.236 43.449 1.00 28.51 ATOM 122 CA THR D 155 32.420 -29.809 40.263 1.00101.10 ATOM 123 CA SER D 156 35.850 -31.297 39.770 1.00 89.35 ATOM 124 CA GLY D 157 38.777 -30.613 37.517 1.00 32.97 ATOM 125 CA ILE D 158 42.464 -29.773 37.543 1.00131.16 ATOM 126 CA VAL D 159 44.430 -26.573 37.581 1.00 50.62 ATOM 127 CA SER D 160 44.831 -25.901 33.903 1.00 94.84 ATOM 128 CA ALA D 161 47.109 -22.894 34.212 1.00 42.15 ATOM 129 CA LEU D 162 48.177 -20.143 36.545 1.00 54.82 ATOM 130 CA GLY D 163 49.340 -16.594 36.360 1.00 31.99 ATOM 131 CA ARG D 164 47.215 -15.767 33.446 1.00122.21 ATOM 132 CA SER D 165 46.059 -12.397 32.326 1.00 81.72 ATOM 133 CA GLY D 166 45.340 -10.130 29.485 1.00 36.91 ATOM 134 CA LEU D 167 41.835 -11.520 29.704 1.00 52.97 ATOM 135 CA ASN D 168 40.724 -7.946 30.253 1.00 95.37 ATOM 136 CA LEU D 169 38.121 -9.265 32.592 1.00 51.96 ATOM 137 CA GLU D 170 39.474 -7.197 35.460 1.00 84.94 ATOM 138 CA GLY D 171 41.939 -4.399 36.030 1.00 36.05 ATOM 139 CA LEU D 172 44.261 -6.659 37.895 1.00115.78 ATOM 140 CA GLU D 173 44.283 -10.243 37.011 1.00 75.37 ATOM 141 CA ASN D 174 46.196 -13.369 37.811 1.00 98.40 ATOM 142 CA PHE D 175 43.696 -16.005 37.348 1.00 76.95 ATOM 143 CA ILE D 176 44.239 -19.584 38.098 1.00 68.48 ATOM 144 CA GLN D 177 42.554 -21.403 35.284 1.00 53.35 ATOM 145 CA THR D 178 40.554 -24.518 35.907 1.00 44.92 ATOM 146 CA ASP D 179 38.707 -27.118 33.884 1.00145.19 ATOM 147 CA ALA D 180 36.160 -27.577 36.644 1.00 41.78 ATOM 148 CA SER D 181 32.732 -26.672 35.428 1.00 82.87 ATOM 149 CA ILE D 182 32.032 -23.098 36.367 1.00 95.62 ATOM 150 CA ASN D 183 28.805 -21.481 35.346 1.00 36.03 ATOM 151 CA ARG D 184 26.895 -18.375 36.162 1.00 88.84 ATOM 152 CA GLY D 185 26.205 -18.224 39.863 1.00 23.93 ATOM 153 CA ASN D 186 29.626 -19.696 40.550 1.00 54.18 ATOM 154 CA ALA D 187 31.115 -16.269 41.134 1.00 87.35 ATOM 155 CA GLY D 188 32.431 -15.731 44.616 1.00 23.80 ATOM 156 CA GLY D 189 32.463 -19.475 45.063 1.00 21.19 ATOM 157 CA ALA D 190 35.419 -21.463 46.208 1.00 43.46 ATOM 158 CA LEU D 191 37.983 -23.480 44.341 1.00 94.03 ATOM 159 CA LEU D 192 39.324 -26.142 46.622 1.00 98.39 ATOM 160 CA ASN D 193 42.324 -28.416 46.887 1.00 85.74 ATOM 161 CA LEU D 194 41.735 -32.046 47.628 1.00145.17 ATOM 162 CA ASN D 195 42.757 -30.976 51.051 1.00107.90 ATOM 163 CA GLY D 196 39.599 -28.911 51.040 1.00 25.18 ATOM 164 CA GLU D 197 41.742 -25.820 51.360 1.00 42.98 ATOM 165 CA LEU D 198 40.838 -22.666 49.479 1.00 61.07 ATOM 166 CA ILE D 199 42.970 -22.266 46.365 1.00 77.85 ATOM 167 CA GLY D 200 41.053 -19.336 44.922 1.00 30.90 ATOM 168 CA ILE D 201 37.722 -17.628 44.362 1.00 90.27 ATOM 169 CA ASN D 202 35.981 -18.404 41.081 1.00 63.39 ATOM 170 CA THR D 203 35.703 -15.071 39.313 1.00 81.19 ATOM 171 CA ALA D 204 34.790 -15.743 35.708 1.00 55.78 ATOM 172 CA ILE D 205 34.727 -17.977 32.683 1.00133.08 ATOM 173 CA LEU D 206 35.380 -17.712 28.991 1.00 59.20 ATOM 174 CA ALA D 207 32.660 -19.277 27.034 1.00 53.12 ATOM 175 CA PRO D 208 30.987 -18.613 23.859 1.00 77.92 ATOM 176 CA GLY D 209 27.516 -19.844 24.583 1.00 26.24 ATOM 177 CA GLY D 210 27.493 -18.526 28.107 1.00 14.65 ATOM 178 CA GLY D 211 27.941 -22.045 29.400 1.00 22.73 ATOM 179 CA SER D 212 31.018 -23.657 30.856 1.00 55.21 ATOM 180 CA VAL D 213 33.514 -24.387 28.103 1.00119.39 ATOM 181 CA GLY D 214 35.938 -25.833 30.598 1.00 36.91 ATOM 182 CA ILE D 215 37.906 -22.646 30.873 1.00 45.62 ATOM 183 CA GLY D 216 37.288 -20.940 34.179 1.00 21.41 ATOM 184 CA PHE D 217 39.311 -18.421 36.099 1.00 47.33 ATOM 185 CA ALA D 218 39.696 -17.821 39.787 1.00 31.46 ATOM 186 CA ILE D 219 41.469 -15.282 41.937 1.00 65.81 ATOM 187 CA PRO D 220 44.172 -17.006 43.807 1.00 85.01 ATOM 188 CA SER D 221 43.717 -17.671 47.499 1.00 40.30 ATOM 189 CA ASN D 222 46.729 -15.671 48.349 1.00 62.40 ATOM 190 CA MET D 223 44.964 -13.116 46.361 1.00109.62 ATOM 191 CA ALA D 224 41.749 -13.075 48.267 1.00 53.35 ATOM 192 CA ARG D 225 43.365 -13.653 51.602 1.00129.97 ATOM 193 CA THR D 226 45.509 -10.623 51.986 1.00 62.72 ATOM 194 CA LEU D 227 43.079 -8.465 50.005 1.00115.97 ATOM 195 CA ALA D 228 40.371 -9.588 52.347 1.00 51.27 ATOM 196 CA GLN D 229 42.678 -9.044 55.252 1.00 89.45 ATOM 197 CA GLN D 230 43.085 -5.305 54.969 1.00182.33 ATOM 198 CA LEU D 231 39.425 -4.953 54.179 1.00 56.79 ATOM 199 CA ILE D 232 39.118 -6.255 57.675 1.00 69.10 ATOM 200 CA ASP D 233 42.359 -4.565 58.719 1.00176.28 ATOM 201 CA PHE D 234 44.580 -2.710 58.326 1.00149.18 ATOM 202 CA GLY D 235 42.177 -1.161 55.941 1.00 35.79 TER