HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA G 35 REMARK 465 SER G 36 REMARK 465 GLN G 37 REMARK 465 GLY G 38 REMARK 465 GLN G 39 REMARK 465 LYS G 40 REMARK 465 ILE G 41 REMARK 465 PRO G 42 REMARK 465 GLU G 43 REMARK 465 GLU G 44 REMARK 465 PHE G 45 REMARK 465 LYS G 46 REMARK 465 LYS G 47 REMARK 465 PHE G 48 REMARK 465 PHE G 49 REMARK 465 GLY G 50 REMARK 465 ASP G 51 REMARK 465 ASP G 52 REMARK 465 LEU G 53 REMARK 465 PRO G 54 REMARK 465 ASP G 55 REMARK 465 GLN G 56 REMARK 465 PRO G 57 DBREF 4A8A G 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 G 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 G 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 G 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 G 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 G 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 G 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 G 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 G 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 G 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 G 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 G 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 G 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 G 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 G 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 G 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 G 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 G 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 G 225 ILE ASP PHE GLY ATOM 1 CA PRO G 11 44.048 36.420 -46.377 1.00108.65 ATOM 2 CA LEU G 12 41.906 37.167 -49.335 1.00 65.61 ATOM 3 CA PRO G 13 40.262 40.441 -48.778 1.00101.38 ATOM 4 CA SER G 14 36.876 39.554 -50.055 1.00 83.64 ATOM 5 CA LEU G 15 35.605 36.102 -49.321 1.00 49.26 ATOM 6 CA ALA G 16 32.575 36.580 -51.501 1.00 35.35 ATOM 7 CA PRO G 17 34.405 36.870 -54.739 1.00 72.70 ATOM 8 CA MET G 18 36.186 33.606 -54.103 1.00 94.30 ATOM 9 CA LEU G 19 33.069 31.960 -52.786 1.00 55.53 ATOM 10 CA GLU G 20 30.855 32.768 -55.698 1.00 80.37 ATOM 11 CA LYS G 21 32.866 30.648 -58.054 1.00100.52 ATOM 12 CA VAL G 22 33.554 27.778 -55.654 1.00113.13 ATOM 13 CA LEU G 23 30.256 27.337 -53.867 1.00 79.77 ATOM 14 CA PRO G 24 28.382 25.465 -56.517 1.00 65.01 ATOM 15 CA ALA G 25 30.991 22.753 -56.234 1.00 44.43 ATOM 16 CA VAL G 26 29.942 21.948 -52.685 1.00 36.03 ATOM 17 CA VAL G 27 26.795 19.933 -52.461 1.00116.29 ATOM 18 CA SER G 28 24.420 18.613 -49.844 1.00 37.07 ATOM 19 CA VAL G 29 23.916 14.910 -49.620 1.00 94.10 ATOM 20 CA ARG G 30 20.598 13.416 -48.644 1.00130.62 ATOM 21 CA VAL G 31 20.342 9.905 -47.338 1.00 45.86 ATOM 22 CA GLU G 32 17.509 7.518 -46.673 1.00 69.83 ATOM 23 CA GLY G 33 17.798 4.025 -45.345 1.00 29.05 ATOM 24 CA THR G 34 17.068 1.302 -42.849 1.00 34.56 ATOM 25 CA ALA G 58 14.904 -0.811 -39.737 1.00 16.95 ATOM 26 CA GLN G 59 12.544 2.092 -39.629 1.00 98.33 ATOM 27 CA PRO G 60 13.121 4.611 -42.337 1.00 95.17 ATOM 28 CA PHE G 61 15.420 7.445 -41.387 1.00 69.21 ATOM 29 CA GLU G 62 16.737 10.472 -43.164 1.00 32.64 ATOM 30 CA GLY G 63 20.184 11.905 -42.774 1.00 22.38 ATOM 31 CA LEU G 64 21.819 14.995 -44.147 1.00 41.25 ATOM 32 CA GLY G 65 25.443 15.606 -44.979 1.00 20.24 ATOM 33 CA SER G 66 27.573 17.366 -47.534 1.00 27.16 ATOM 34 CA GLY G 67 29.884 16.411 -50.348 1.00 20.06 ATOM 35 CA VAL G 68 32.270 17.969 -52.797 1.00 99.26 ATOM 36 CA ILE G 69 32.218 17.635 -56.553 1.00108.64 ATOM 37 CA ILE G 70 35.624 16.341 -57.524 1.00123.66 ATOM 38 CA ASN G 71 34.912 15.696 -61.169 1.00 46.84 ATOM 39 CA ALA G 72 32.210 17.620 -62.928 1.00 29.77 ATOM 40 CA SER G 73 32.182 15.491 -66.023 1.00 32.14 ATOM 41 CA LYS G 74 32.000 12.204 -64.199 1.00158.21 ATOM 42 CA GLY G 75 29.920 13.607 -61.424 1.00 27.78 ATOM 43 CA TYR G 76 32.113 12.151 -58.723 1.00 70.27 ATOM 44 CA VAL G 77 31.381 13.529 -55.290 1.00134.51 ATOM 45 CA LEU G 78 33.534 12.971 -52.268 1.00 63.90 ATOM 46 CA THR G 79 31.882 12.486 -48.931 1.00123.14 ATOM 47 CA ASN G 80 32.401 10.866 -45.579 1.00 55.27 ATOM 48 CA ASN G 81 31.697 7.188 -45.362 1.00 48.72 ATOM 49 CA HIS G 82 29.688 7.672 -42.217 1.00 48.17 ATOM 50 CA VAL G 83 27.274 9.907 -44.021 1.00 64.78 ATOM 51 CA ILE G 84 26.753 7.297 -46.737 1.00113.59 ATOM 52 CA ASN G 85 27.067 4.039 -44.848 1.00122.79 ATOM 53 CA GLN G 86 23.440 3.411 -43.853 1.00 70.00 ATOM 54 CA ALA G 87 21.999 4.908 -47.040 1.00 69.24 ATOM 55 CA GLN G 88 19.633 2.820 -49.098 1.00 56.34 ATOM 56 CA LYS G 89 19.211 5.734 -51.467 1.00 30.20 ATOM 57 CA ILE G 90 21.324 8.804 -51.978 1.00 86.12 ATOM 58 CA SER G 91 20.418 12.124 -53.473 1.00 73.68 ATOM 59 CA ILE G 92 22.546 15.161 -54.091 1.00 60.79 ATOM 60 CA GLN G 93 21.305 18.700 -54.203 1.00 47.34 ATOM 61 CA LEU G 94 23.084 21.658 -55.692 1.00 46.05 ATOM 62 CA ASN G 95 22.966 25.129 -54.256 1.00 99.77 ATOM 63 CA ASP G 96 20.942 26.113 -57.298 1.00 45.91 ATOM 64 CA GLY G 97 18.231 23.751 -56.156 1.00 28.36 ATOM 65 CA ARG G 98 18.768 21.092 -58.771 1.00 60.60 ATOM 66 CA GLU G 99 18.760 17.585 -57.394 1.00 39.80 ATOM 67 CA PHE G 100 20.301 14.403 -58.685 1.00 50.47 ATOM 68 CA ASP G 101 20.456 10.781 -57.666 1.00102.25 ATOM 69 CA ALA G 102 23.739 9.224 -56.704 1.00 30.08 ATOM 70 CA LYS G 103 25.233 5.781 -56.356 1.00 75.73 ATOM 71 CA LEU G 104 28.030 4.736 -54.076 1.00 44.62 ATOM 72 CA ILE G 105 31.128 4.054 -56.099 1.00 40.04 ATOM 73 CA GLY G 106 33.148 2.867 -53.142 1.00 23.40 ATOM 74 CA SER G 107 34.273 3.823 -49.686 1.00103.00 ATOM 75 CA ASP G 108 36.397 2.731 -46.845 1.00109.47 ATOM 76 CA ASP G 109 35.815 2.689 -43.116 1.00 63.74 ATOM 77 CA GLN G 110 39.241 3.303 -41.736 1.00 91.78 ATOM 78 CA SER G 111 39.885 6.682 -43.379 1.00 67.37 ATOM 79 CA ASP G 112 36.153 7.400 -43.566 1.00 73.42 ATOM 80 CA ILE G 113 36.184 8.474 -47.202 1.00 50.20 ATOM 81 CA ALA G 114 33.483 7.557 -49.690 1.00 38.60 ATOM 82 CA LEU G 115 33.047 8.289 -53.363 1.00 99.11 ATOM 83 CA LEU G 116 29.651 8.872 -54.936 1.00 55.43 ATOM 84 CA GLN G 117 28.677 9.308 -58.539 1.00 38.25 ATOM 85 CA ILE G 118 25.869 11.538 -59.694 1.00 40.67 ATOM 86 CA GLN G 119 23.520 10.008 -62.165 1.00 52.55 ATOM 87 CA ASN G 120 23.350 11.901 -65.429 1.00 57.10 ATOM 88 CA PRO G 121 25.282 14.791 -64.043 1.00 63.53 ATOM 89 CA SER G 122 24.923 17.958 -66.056 1.00 34.82 ATOM 90 CA LYS G 123 26.461 21.418 -65.917 1.00 42.79 ATOM 91 CA LEU G 124 28.335 20.789 -62.713 1.00 86.33 ATOM 92 CA THR G 125 31.201 22.723 -61.219 1.00115.62 ATOM 93 CA GLN G 126 34.316 21.109 -59.868 1.00 65.41 ATOM 94 CA ILE G 127 36.500 22.009 -56.935 1.00117.37 ATOM 95 CA ALA G 128 40.194 22.383 -57.504 1.00 27.86 ATOM 96 CA ILE G 129 42.253 20.455 -55.024 1.00 80.68 ATOM 97 CA ALA G 130 45.165 21.992 -53.172 1.00 37.28 ATOM 98 CA ASP G 131 48.213 20.270 -51.762 1.00 33.68 ATOM 99 CA SER G 132 47.373 19.582 -48.141 1.00 39.39 ATOM 100 CA ASP G 133 50.999 18.990 -47.296 1.00 40.42 ATOM 101 CA LYS G 134 51.700 22.658 -47.954 1.00123.62 ATOM 102 CA LEU G 135 49.218 23.718 -45.309 1.00186.24 ATOM 103 CA ARG G 136 50.701 25.516 -42.321 1.00102.73 ATOM 104 CA VAL G 137 49.065 26.513 -39.101 1.00 82.91 ATOM 105 CA GLY G 138 47.615 29.967 -39.345 1.00 24.29 ATOM 106 CA ASP G 139 46.407 29.499 -42.877 1.00 29.89 ATOM 107 CA PHE G 140 42.896 30.738 -43.430 1.00 58.73 ATOM 108 CA ALA G 141 40.205 28.211 -44.120 1.00 37.70 ATOM 109 CA VAL G 142 36.562 28.293 -45.000 1.00 95.90 ATOM 110 CA ALA G 143 34.186 25.457 -44.356 1.00 30.30 ATOM 111 CA VAL G 144 31.169 24.823 -46.495 1.00 28.37 ATOM 112 CA GLY G 145 28.460 22.311 -45.791 1.00 19.91 ATOM 113 CA ASN G 146 24.960 22.064 -44.487 1.00 55.77 ATOM 114 CA PRO G 147 24.844 22.296 -40.810 1.00105.24 ATOM 115 CA PHE G 148 21.518 21.329 -39.317 1.00 61.97 ATOM 116 CA GLY G 149 20.321 20.916 -42.868 1.00 22.47 ATOM 117 CA LEU G 150 19.817 24.642 -43.123 1.00 80.59 ATOM 118 CA GLY G 151 21.272 24.826 -46.597 1.00 28.46 ATOM 119 CA GLN G 152 24.682 25.646 -47.900 1.00 69.11 ATOM 120 CA THR G 153 26.492 27.514 -45.189 1.00 32.27 ATOM 121 CA ALA G 154 29.970 28.947 -45.154 1.00 29.28 ATOM 122 CA THR G 155 32.026 29.507 -42.040 1.00 97.43 ATOM 123 CA SER G 156 35.483 30.946 -41.686 1.00 33.84 ATOM 124 CA GLY G 157 38.462 30.169 -39.520 1.00 21.86 ATOM 125 CA ILE G 158 42.127 29.269 -39.580 1.00 95.32 ATOM 126 CA VAL G 159 43.975 26.003 -39.669 1.00114.00 ATOM 127 CA SER G 160 44.540 25.323 -36.016 1.00 96.83 ATOM 128 CA ALA G 161 46.690 22.247 -36.364 1.00 43.12 ATOM 129 CA LEU G 162 47.643 19.437 -38.663 1.00 93.21 ATOM 130 CA GLY G 163 48.745 15.875 -38.404 1.00 28.05 ATOM 131 CA ARG G 164 46.576 15.178 -35.480 1.00 90.70 ATOM 132 CA SER G 165 45.471 11.809 -34.277 1.00 83.09 ATOM 133 CA GLY G 166 44.770 9.580 -31.409 1.00 36.71 ATOM 134 CA LEU G 167 41.297 11.052 -31.529 1.00 48.27 ATOM 135 CA ASN G 168 40.167 7.494 -32.107 1.00 75.06 ATOM 136 CA LEU G 169 37.519 8.904 -34.361 1.00 49.79 ATOM 137 CA GLU G 170 38.687 6.651 -37.162 1.00146.94 ATOM 138 CA GLY G 171 41.146 3.863 -37.882 1.00 42.09 ATOM 139 CA LEU G 172 43.438 6.057 -39.861 1.00156.65 ATOM 140 CA GLU G 173 43.572 9.619 -38.845 1.00 79.43 ATOM 141 CA ASN G 174 45.477 12.730 -39.780 1.00102.05 ATOM 142 CA PHE G 175 43.051 15.437 -39.297 1.00 89.05 ATOM 143 CA ILE G 176 43.596 19.015 -40.112 1.00 70.53 ATOM 144 CA GLN G 177 42.140 20.889 -37.201 1.00 55.94 ATOM 145 CA THR G 178 40.169 23.996 -37.850 1.00125.53 ATOM 146 CA ASP G 179 38.450 26.728 -35.850 1.00 97.22 ATOM 147 CA ALA G 180 35.839 27.202 -38.536 1.00 47.31 ATOM 148 CA SER G 181 32.416 26.457 -37.200 1.00 82.51 ATOM 149 CA ILE G 182 31.588 22.892 -38.008 1.00 56.31 ATOM 150 CA ASN G 183 28.381 21.330 -36.829 1.00 46.35 ATOM 151 CA ARG G 184 26.334 18.295 -37.593 1.00 56.09 ATOM 152 CA GLY G 185 25.551 18.127 -41.267 1.00 25.52 ATOM 153 CA ASN G 186 28.970 19.490 -42.122 1.00138.38 ATOM 154 CA ALA G 187 30.369 16.019 -42.674 1.00 88.83 ATOM 155 CA GLY G 188 31.560 15.378 -46.178 1.00 24.32 ATOM 156 CA GLY G 189 31.671 19.117 -46.674 1.00 21.32 ATOM 157 CA ALA G 190 34.625 21.022 -47.969 1.00 41.90 ATOM 158 CA LEU G 191 37.292 22.955 -46.176 1.00 61.28 ATOM 159 CA LEU G 192 38.684 25.534 -48.544 1.00102.98 ATOM 160 CA ASN G 193 41.699 27.758 -48.888 1.00156.72 ATOM 161 CA LEU G 194 41.408 31.444 -49.720 1.00 59.04 ATOM 162 CA ASN G 195 41.966 30.288 -53.259 1.00 65.52 ATOM 163 CA GLY G 196 38.834 28.222 -53.002 1.00 28.90 ATOM 164 CA GLU G 197 40.894 25.107 -53.400 1.00 52.98 ATOM 165 CA LEU G 198 39.989 22.058 -51.354 1.00 71.75 ATOM 166 CA ILE G 199 42.245 21.589 -48.341 1.00 84.44 ATOM 167 CA GLY G 200 40.267 18.739 -46.803 1.00 29.32 ATOM 168 CA ILE G 201 36.908 17.159 -46.116 1.00 62.28 ATOM 169 CA ASN G 202 35.326 17.988 -42.790 1.00 78.19 ATOM 170 CA THR G 203 34.953 14.693 -40.963 1.00 81.87 ATOM 171 CA ALA G 204 34.208 15.414 -37.325 1.00 52.08 ATOM 172 CA ILE G 205 34.178 17.703 -34.324 1.00109.27 ATOM 173 CA LEU G 206 34.900 17.372 -30.674 1.00118.43 ATOM 174 CA ALA G 207 32.250 19.130 -28.740 1.00 61.81 ATOM 175 CA PRO G 208 30.862 18.592 -25.354 1.00192.34 ATOM 176 CA GLY G 209 27.405 19.878 -26.060 1.00224.20 ATOM 177 CA GLY G 210 27.198 18.550 -29.563 1.00 45.28 ATOM 178 CA GLY G 211 27.651 22.022 -30.946 1.00 25.72 ATOM 179 CA SER G 212 30.702 23.547 -32.535 1.00 61.34 ATOM 180 CA VAL G 213 33.325 24.195 -29.888 1.00156.87 ATOM 181 CA GLY G 214 35.734 25.536 -32.419 1.00 47.45 ATOM 182 CA ILE G 215 37.655 22.345 -32.760 1.00122.76 ATOM 183 CA GLY G 216 36.859 20.551 -35.955 1.00 21.19 ATOM 184 CA PHE G 217 38.775 17.988 -37.911 1.00 48.00 ATOM 185 CA ALA G 218 39.008 17.316 -41.598 1.00 35.36 ATOM 186 CA ILE G 219 40.722 14.748 -43.722 1.00175.94 ATOM 187 CA PRO G 220 43.366 16.330 -45.746 1.00 90.81 ATOM 188 CA SER G 221 42.775 16.891 -49.423 1.00 93.60 ATOM 189 CA ASN G 222 45.799 14.903 -50.299 1.00 60.23 ATOM 190 CA MET G 223 43.997 12.389 -48.297 1.00104.77 ATOM 191 CA ALA G 224 40.710 12.430 -50.079 1.00 53.94 ATOM 192 CA ARG G 225 42.196 12.956 -53.481 1.00159.09 ATOM 193 CA THR G 226 44.243 9.873 -53.915 1.00 65.85 ATOM 194 CA LEU G 227 41.856 7.805 -51.803 1.00109.14 ATOM 195 CA ALA G 228 39.073 8.945 -54.049 1.00 43.71 ATOM 196 CA GLN G 229 41.129 8.316 -57.108 1.00 77.81 ATOM 197 CA GLN G 230 41.616 4.641 -56.569 1.00 91.55 ATOM 198 CA LEU G 231 37.919 4.393 -55.864 1.00 67.53 ATOM 199 CA ILE G 232 37.354 5.342 -59.436 1.00 60.77 ATOM 200 CA ASP G 233 40.724 3.941 -60.535 1.00165.52 ATOM 201 CA PHE G 234 42.551 1.855 -60.016 1.00153.65 ATOM 202 CA GLY G 235 40.864 0.816 -56.853 1.00 53.92 TER