HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 35 REMARK 465 SER H 36 REMARK 465 GLN H 37 REMARK 465 GLY H 38 REMARK 465 GLN H 39 REMARK 465 LYS H 40 REMARK 465 ILE H 41 REMARK 465 PRO H 42 REMARK 465 GLU H 43 REMARK 465 GLU H 44 REMARK 465 PHE H 45 REMARK 465 LYS H 46 REMARK 465 LYS H 47 REMARK 465 PHE H 48 REMARK 465 PHE H 49 REMARK 465 GLY H 50 REMARK 465 ASP H 51 REMARK 465 ASP H 52 REMARK 465 LEU H 53 REMARK 465 PRO H 54 REMARK 465 ASP H 55 REMARK 465 GLN H 56 REMARK 465 PRO H 57 DBREF 4A8A H 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 H 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 H 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 H 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 H 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 H 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 H 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 H 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 H 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 H 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 H 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 H 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 H 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 H 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 H 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 H 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 H 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 H 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 H 225 ILE ASP PHE GLY ATOM 1 CA PRO H 11 48.707 46.360 -42.813 1.00138.27 ATOM 2 CA LEU H 12 45.069 46.672 -41.950 1.00140.53 ATOM 3 CA PRO H 13 44.196 49.908 -40.306 1.00101.03 ATOM 4 CA SER H 14 43.174 49.665 -36.688 1.00 86.07 ATOM 5 CA LEU H 15 39.557 49.655 -35.615 1.00 52.75 ATOM 6 CA ALA H 16 40.075 52.112 -32.814 1.00 38.43 ATOM 7 CA PRO H 17 40.452 55.150 -34.957 1.00138.52 ATOM 8 CA MET H 18 37.276 54.389 -36.867 1.00128.73 ATOM 9 CA LEU H 19 35.591 53.393 -33.647 1.00164.21 ATOM 10 CA GLU H 20 36.425 56.597 -31.850 1.00 49.50 ATOM 11 CA LYS H 21 34.352 58.775 -34.105 1.00 40.58 ATOM 12 CA VAL H 22 31.456 56.358 -34.508 1.00 56.40 ATOM 13 CA LEU H 23 30.852 55.078 -31.005 1.00123.92 ATOM 14 CA PRO H 24 29.051 58.025 -29.579 1.00 65.88 ATOM 15 CA ALA H 25 26.381 57.448 -32.200 1.00 31.23 ATOM 16 CA VAL H 26 25.461 54.123 -30.643 1.00 31.82 ATOM 17 CA VAL H 27 23.269 54.434 -27.608 1.00 40.87 ATOM 18 CA SER H 28 21.910 52.183 -24.911 1.00 36.68 ATOM 19 CA VAL H 29 18.179 52.149 -24.486 1.00 34.08 ATOM 20 CA ARG H 30 16.565 51.567 -21.144 1.00 79.03 ATOM 21 CA VAL H 31 12.957 50.565 -20.827 1.00 39.37 ATOM 22 CA GLU H 32 10.475 50.323 -17.999 1.00 35.91 ATOM 23 CA GLY H 33 6.898 49.181 -18.124 1.00 22.05 ATOM 24 CA THR H 34 4.453 46.497 -17.215 1.00 61.08 ATOM 25 CA ALA H 58 1.934 43.821 -14.984 1.00 20.34 ATOM 26 CA GLN H 59 4.920 43.530 -12.727 1.00 91.21 ATOM 27 CA PRO H 60 7.388 46.305 -13.265 1.00149.20 ATOM 28 CA PHE H 61 10.227 45.206 -15.452 1.00 58.22 ATOM 29 CA GLU H 62 13.333 46.855 -16.733 1.00 26.49 ATOM 30 CA GLY H 63 14.795 45.960 -20.064 1.00 17.27 ATOM 31 CA LEU H 64 17.976 46.994 -21.734 1.00 75.54 ATOM 32 CA GLY H 65 18.718 47.304 -25.403 1.00 22.01 ATOM 33 CA SER H 66 20.609 49.520 -27.763 1.00 72.63 ATOM 34 CA GLY H 67 19.826 52.016 -30.474 1.00 18.46 ATOM 35 CA VAL H 68 21.524 54.103 -33.099 1.00 38.79 ATOM 36 CA ILE H 69 21.315 57.847 -33.525 1.00152.58 ATOM 37 CA ILE H 70 20.111 58.428 -37.039 1.00121.93 ATOM 38 CA ASN H 71 19.741 62.173 -36.768 1.00 51.71 ATOM 39 CA ALA H 72 21.633 64.186 -34.222 1.00 36.97 ATOM 40 CA SER H 73 19.679 67.348 -34.682 1.00 32.86 ATOM 41 CA LYS H 74 16.298 65.760 -34.380 1.00111.45 ATOM 42 CA GLY H 75 17.498 63.159 -31.956 1.00 26.70 ATOM 43 CA TYR H 76 16.013 60.232 -33.825 1.00 62.79 ATOM 44 CA VAL H 77 17.176 56.865 -32.590 1.00 46.88 ATOM 45 CA LEU H 78 16.567 53.630 -34.436 1.00152.68 ATOM 46 CA THR H 79 15.890 50.554 -32.350 1.00 62.20 ATOM 47 CA ASN H 80 14.134 47.234 -32.536 1.00 69.92 ATOM 48 CA ASN H 81 10.432 47.179 -31.911 1.00 41.68 ATOM 49 CA HIS H 82 10.718 44.370 -29.435 1.00 53.35 ATOM 50 CA VAL H 83 13.013 46.340 -27.217 1.00 38.06 ATOM 51 CA ILE H 84 10.489 49.205 -27.178 1.00119.42 ATOM 52 CA ASN H 85 7.196 47.328 -27.297 1.00 65.79 ATOM 53 CA GLN H 86 6.406 46.980 -23.585 1.00 59.81 ATOM 54 CA ALA H 87 8.023 50.270 -22.588 1.00 67.72 ATOM 55 CA GLN H 88 5.935 52.668 -20.584 1.00 55.21 ATOM 56 CA LYS H 89 8.925 54.960 -20.421 1.00 31.18 ATOM 57 CA ILE H 90 12.139 54.962 -22.362 1.00 48.94 ATOM 58 CA SER H 91 15.456 56.566 -21.670 1.00 32.79 ATOM 59 CA ILE H 92 18.630 56.548 -23.655 1.00 73.94 ATOM 60 CA GLN H 93 22.148 56.772 -22.377 1.00 37.63 ATOM 61 CA LEU H 94 25.128 58.030 -24.263 1.00 43.78 ATOM 62 CA ASN H 95 28.599 56.554 -24.017 1.00 44.50 ATOM 63 CA ASP H 96 29.602 59.685 -22.184 1.00 57.82 ATOM 64 CA GLY H 97 27.103 58.990 -19.448 1.00 26.93 ATOM 65 CA ARG H 98 24.616 61.639 -20.437 1.00141.00 ATOM 66 CA GLU H 99 21.056 60.421 -20.273 1.00 41.55 ATOM 67 CA PHE H 100 17.929 61.571 -22.047 1.00 49.85 ATOM 68 CA ASP H 101 14.288 60.628 -22.153 1.00 31.77 ATOM 69 CA ALA H 102 12.790 59.404 -25.374 1.00 28.91 ATOM 70 CA LYS H 103 9.386 59.053 -26.957 1.00106.10 ATOM 71 CA LEU H 104 8.341 56.448 -29.456 1.00107.09 ATOM 72 CA ILE H 105 7.731 58.088 -32.803 1.00 95.04 ATOM 73 CA GLY H 106 6.513 54.925 -34.440 1.00 23.22 ATOM 74 CA SER H 107 7.319 51.299 -35.017 1.00 88.10 ATOM 75 CA ASP H 108 6.463 48.233 -37.059 1.00 87.57 ATOM 76 CA ASP H 109 5.907 44.736 -35.763 1.00 55.90 ATOM 77 CA GLN H 110 6.577 42.735 -38.860 1.00156.40 ATOM 78 CA SER H 111 9.980 44.213 -39.715 1.00130.40 ATOM 79 CA ASP H 112 10.679 44.856 -36.027 1.00 73.70 ATOM 80 CA ILE H 113 11.926 48.407 -36.475 1.00 48.20 ATOM 81 CA ALA H 114 11.010 51.297 -34.212 1.00 31.28 ATOM 82 CA LEU H 115 11.946 54.949 -34.202 1.00 96.86 ATOM 83 CA LEU H 116 12.503 56.920 -31.033 1.00 48.63 ATOM 84 CA GLN H 117 13.046 60.601 -30.500 1.00130.88 ATOM 85 CA ILE H 118 15.220 61.993 -27.794 1.00135.23 ATOM 86 CA GLN H 119 13.754 64.840 -25.861 1.00101.87 ATOM 87 CA ASN H 120 15.871 67.949 -25.758 1.00 50.48 ATOM 88 CA PRO H 121 18.641 66.327 -27.697 1.00 70.59 ATOM 89 CA SER H 122 21.891 68.200 -27.479 1.00 39.33 ATOM 90 CA LYS H 123 25.425 67.766 -28.770 1.00 43.23 ATOM 91 CA LEU H 124 24.702 64.405 -30.292 1.00 47.41 ATOM 92 CA THR H 125 26.596 62.530 -32.963 1.00 37.09 ATOM 93 CA GLN H 126 24.968 60.736 -35.866 1.00173.17 ATOM 94 CA ILE H 127 25.848 57.563 -37.652 1.00 83.46 ATOM 95 CA ALA H 128 26.252 57.523 -41.396 1.00 28.95 ATOM 96 CA ILE H 129 24.327 54.866 -43.245 1.00 54.47 ATOM 97 CA ALA H 130 25.838 52.611 -45.872 1.00 37.00 ATOM 98 CA ASP H 131 24.108 50.861 -48.729 1.00 37.03 ATOM 99 CA SER H 132 23.188 47.436 -47.444 1.00 38.02 ATOM 100 CA ASP H 133 22.606 46.175 -50.947 1.00 33.04 ATOM 101 CA LYS H 134 26.309 46.503 -51.688 1.00137.47 ATOM 102 CA LEU H 135 27.353 44.161 -48.929 1.00111.54 ATOM 103 CA ARG H 136 28.755 40.814 -49.853 1.00118.37 ATOM 104 CA VAL H 137 29.759 37.875 -47.758 1.00 84.12 ATOM 105 CA GLY H 138 33.192 38.254 -46.284 1.00 24.69 ATOM 106 CA ASP H 139 32.828 41.937 -45.562 1.00127.82 ATOM 107 CA PHE H 140 34.057 43.025 -42.170 1.00 54.72 ATOM 108 CA ALA H 141 31.509 44.025 -39.605 1.00 32.32 ATOM 109 CA VAL H 142 31.599 45.410 -36.110 1.00 88.90 ATOM 110 CA ALA H 143 28.704 45.195 -33.738 1.00 31.44 ATOM 111 CA VAL H 144 28.095 47.733 -31.041 1.00 29.65 ATOM 112 CA GLY H 145 25.508 47.475 -28.330 1.00 25.19 ATOM 113 CA ASN H 146 25.140 46.649 -24.707 1.00110.09 ATOM 114 CA PRO H 147 25.265 43.011 -24.059 1.00 73.03 ATOM 115 CA PHE H 148 24.159 42.027 -20.588 1.00 62.94 ATOM 116 CA GLY H 149 23.778 45.721 -19.928 1.00 22.02 ATOM 117 CA LEU H 150 27.501 45.861 -19.369 1.00 41.89 ATOM 118 CA GLY H 151 27.922 49.097 -21.251 1.00 30.28 ATOM 119 CA GLN H 152 28.840 49.911 -24.779 1.00 59.79 ATOM 120 CA THR H 153 30.687 46.959 -26.175 1.00 50.02 ATOM 121 CA ALA H 154 32.132 46.409 -29.591 1.00 37.07 ATOM 122 CA THR H 155 32.624 43.040 -31.196 1.00107.78 ATOM 123 CA SER H 156 34.082 42.164 -34.547 1.00 79.72 ATOM 124 CA GLY H 157 33.279 39.637 -37.229 1.00 21.84 ATOM 125 CA ILE H 158 32.457 39.248 -40.898 1.00 57.29 ATOM 126 CA VAL H 159 29.241 39.239 -42.863 1.00 55.74 ATOM 127 CA SER H 160 28.371 35.563 -42.820 1.00 53.99 ATOM 128 CA ALA H 161 25.385 35.688 -45.115 1.00 46.93 ATOM 129 CA LEU H 162 22.724 37.972 -46.422 1.00116.41 ATOM 130 CA GLY H 163 19.211 37.773 -47.668 1.00 31.80 ATOM 131 CA ARG H 164 18.230 35.185 -45.222 1.00102.62 ATOM 132 CA SER H 165 14.954 34.384 -43.699 1.00 89.66 ATOM 133 CA GLY H 166 12.420 31.746 -42.979 1.00 40.92 ATOM 134 CA LEU H 167 13.830 32.043 -39.485 1.00 51.05 ATOM 135 CA ASN H 168 10.282 32.910 -38.505 1.00 65.98 ATOM 136 CA LEU H 169 11.715 35.403 -36.092 1.00 46.75 ATOM 137 CA GLU H 170 9.582 38.107 -37.648 1.00108.39 ATOM 138 CA GLY H 171 6.948 38.678 -40.316 1.00 40.43 ATOM 139 CA LEU H 172 9.351 40.267 -42.736 1.00164.25 ATOM 140 CA GLU H 173 12.824 38.980 -42.603 1.00 93.02 ATOM 141 CA ASN H 174 15.984 39.634 -44.521 1.00114.47 ATOM 142 CA PHE H 175 18.647 39.351 -42.026 1.00 99.62 ATOM 143 CA ILE H 176 22.251 39.988 -42.635 1.00 77.54 ATOM 144 CA GLN H 177 23.993 37.258 -40.735 1.00 44.79 ATOM 145 CA THR H 178 27.143 38.010 -38.820 1.00 46.51 ATOM 146 CA ASP H 179 29.707 36.127 -36.764 1.00 59.19 ATOM 147 CA ALA H 180 30.247 39.138 -34.541 1.00 40.46 ATOM 148 CA SER H 181 29.361 38.282 -31.003 1.00 88.51 ATOM 149 CA ILE H 182 25.790 39.322 -30.401 1.00114.55 ATOM 150 CA ASN H 183 24.219 38.711 -27.045 1.00 58.89 ATOM 151 CA ARG H 184 21.105 39.768 -25.278 1.00117.60 ATOM 152 CA GLY H 185 21.055 43.518 -24.977 1.00 23.95 ATOM 153 CA ASN H 186 22.557 43.886 -28.430 1.00 56.57 ATOM 154 CA ALA H 187 19.128 44.387 -29.929 1.00 43.00 ATOM 155 CA GLY H 188 18.658 47.713 -31.615 1.00 23.66 ATOM 156 CA GLY H 189 22.415 48.057 -31.697 1.00 21.18 ATOM 157 CA ALA H 190 24.438 48.900 -34.733 1.00 44.15 ATOM 158 CA LEU H 191 26.327 46.686 -37.084 1.00133.03 ATOM 159 CA LEU H 192 28.987 48.715 -38.779 1.00 70.95 ATOM 160 CA ASN H 193 31.310 48.641 -41.743 1.00153.74 ATOM 161 CA LEU H 194 35.030 49.282 -41.444 1.00 45.11 ATOM 162 CA ASN H 195 34.017 52.750 -42.519 1.00 57.74 ATOM 163 CA GLY H 196 31.892 53.033 -39.424 1.00 27.92 ATOM 164 CA GLU H 197 28.813 53.272 -41.570 1.00 55.80 ATOM 165 CA LEU H 198 25.637 51.535 -40.452 1.00140.26 ATOM 166 CA ILE H 199 25.146 48.266 -42.324 1.00 84.73 ATOM 167 CA GLY H 200 22.207 47.084 -40.230 1.00 31.73 ATOM 168 CA ILE H 201 20.553 46.903 -36.833 1.00 58.14 ATOM 169 CA ASN H 202 21.195 43.765 -34.829 1.00 68.27 ATOM 170 CA THR H 203 17.813 42.143 -34.307 1.00 84.15 ATOM 171 CA ALA H 204 18.401 38.633 -33.033 1.00 62.37 ATOM 172 CA ILE H 205 20.510 35.522 -32.702 1.00199.06 ATOM 173 CA LEU H 206 20.072 31.828 -32.905 1.00 81.51 ATOM 174 CA ALA H 207 21.670 30.233 -29.926 1.00 57.92 ATOM 175 CA PRO H 208 20.744 27.094 -28.162 1.00144.49 ATOM 176 CA GLY H 209 22.531 28.226 -25.015 1.00 31.24 ATOM 177 CA GLY H 210 21.036 31.656 -25.099 1.00 23.63 ATOM 178 CA GLY H 211 24.571 32.870 -25.584 1.00 25.26 ATOM 179 CA SER H 212 26.217 33.957 -28.796 1.00 56.35 ATOM 180 CA VAL H 213 26.858 30.993 -31.066 1.00139.25 ATOM 181 CA GLY H 214 28.352 33.231 -33.679 1.00 37.19 ATOM 182 CA ILE H 215 25.101 33.258 -35.577 1.00110.86 ATOM 183 CA GLY H 216 23.575 36.706 -35.397 1.00 23.30 ATOM 184 CA PHE H 217 21.046 38.462 -37.562 1.00 47.85 ATOM 185 CA ALA H 218 20.574 42.119 -38.342 1.00 36.43 ATOM 186 CA ILE H 219 18.097 44.160 -40.315 1.00 92.95 ATOM 187 CA PRO H 220 19.819 45.693 -43.222 1.00 88.67 ATOM 188 CA SER H 221 20.602 49.376 -43.122 1.00 98.19 ATOM 189 CA ASN H 222 18.657 50.001 -46.231 1.00 63.87 ATOM 190 CA MET H 223 16.048 48.311 -44.264 1.00113.55 ATOM 191 CA ALA H 224 16.080 50.491 -41.232 1.00 51.31 ATOM 192 CA ARG H 225 16.799 53.650 -43.127 1.00 91.58 ATOM 193 CA THR H 226 13.825 53.948 -45.355 1.00 60.63 ATOM 194 CA LEU H 227 11.595 52.274 -42.766 1.00110.76 ATOM 195 CA ALA H 228 12.763 54.816 -40.249 1.00 45.29 ATOM 196 CA GLN H 229 12.308 57.525 -42.786 1.00 83.40 ATOM 197 CA GLN H 230 8.581 57.416 -43.122 1.00 90.78 ATOM 198 CA LEU H 231 8.257 57.008 -39.398 1.00109.31 ATOM 199 CA ILE H 232 9.473 60.530 -39.396 1.00125.14 ATOM 200 CA ASP H 233 8.188 61.240 -42.957 1.00164.90 ATOM 201 CA PHE H 234 6.276 60.639 -45.216 1.00195.86 ATOM 202 CA GLY H 235 4.560 59.298 -42.210 1.00 28.39 TER