HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA J 35 REMARK 465 SER J 36 REMARK 465 GLN J 37 REMARK 465 GLY J 38 REMARK 465 GLN J 39 REMARK 465 LYS J 40 REMARK 465 ILE J 41 REMARK 465 PRO J 42 REMARK 465 GLU J 43 REMARK 465 GLU J 44 REMARK 465 PHE J 45 REMARK 465 LYS J 46 REMARK 465 LYS J 47 REMARK 465 PHE J 48 REMARK 465 PHE J 49 REMARK 465 GLY J 50 REMARK 465 ASP J 51 REMARK 465 ASP J 52 REMARK 465 LEU J 53 REMARK 465 PRO J 54 REMARK 465 ASP J 55 REMARK 465 GLN J 56 REMARK 465 PRO J 57 DBREF 4A8A J 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 J 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 J 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 J 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 J 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 J 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 J 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 J 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 J 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 J 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 J 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 J 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 J 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 J 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 J 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 J 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 J 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 J 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 J 225 ILE ASP PHE GLY ATOM 1 CA PRO J 11 -40.863 -44.219 -43.688 1.00 55.91 ATOM 2 CA LEU J 12 -40.330 -40.547 -43.927 1.00110.71 ATOM 3 CA PRO J 13 -39.702 -39.632 -47.418 1.00111.92 ATOM 4 CA SER J 14 -36.355 -40.396 -48.821 1.00 88.00 ATOM 5 CA LEU J 15 -35.018 -36.887 -48.702 1.00 85.70 ATOM 6 CA ALA J 16 -32.035 -37.707 -50.826 1.00 37.49 ATOM 7 CA PRO J 17 -33.884 -38.134 -54.030 1.00 69.40 ATOM 8 CA MET J 18 -35.617 -34.798 -53.698 1.00 34.19 ATOM 9 CA LEU J 19 -32.474 -33.144 -52.449 1.00 44.01 ATOM 10 CA GLU J 20 -30.200 -34.223 -55.228 1.00 48.35 ATOM 11 CA LYS J 21 -32.152 -32.314 -57.822 1.00132.53 ATOM 12 CA VAL J 22 -32.736 -29.197 -55.714 1.00111.28 ATOM 13 CA LEU J 23 -29.416 -28.711 -53.951 1.00117.24 ATOM 14 CA PRO J 24 -27.533 -27.107 -56.765 1.00 66.56 ATOM 15 CA ALA J 25 -30.064 -24.290 -56.648 1.00 31.26 ATOM 16 CA VAL J 26 -28.876 -23.193 -53.232 1.00 34.34 ATOM 17 CA VAL J 27 -25.617 -21.326 -53.174 1.00 36.68 ATOM 18 CA SER J 28 -23.233 -19.832 -50.687 1.00 35.70 ATOM 19 CA VAL J 29 -22.562 -16.155 -50.795 1.00108.81 ATOM 20 CA ARG J 30 -19.295 -14.660 -49.708 1.00 88.25 ATOM 21 CA VAL J 31 -18.868 -11.024 -48.859 1.00 45.56 ATOM 22 CA GLU J 32 -16.012 -8.616 -48.198 1.00 49.10 ATOM 23 CA GLY J 33 -16.200 -5.013 -47.106 1.00 29.05 ATOM 24 CA THR J 34 -15.769 -2.296 -44.505 1.00 50.83 ATOM 25 CA ALA J 58 -13.165 0.488 -41.763 1.00 48.60 ATOM 26 CA GLN J 59 -11.682 -2.858 -40.975 1.00146.13 ATOM 27 CA PRO J 60 -11.861 -5.408 -43.644 1.00 74.67 ATOM 28 CA PHE J 61 -14.119 -8.301 -42.810 1.00 51.34 ATOM 29 CA GLU J 62 -15.376 -11.372 -44.561 1.00 25.16 ATOM 30 CA GLY J 63 -18.823 -12.772 -44.135 1.00 22.00 ATOM 31 CA LEU J 64 -20.492 -15.924 -45.320 1.00 88.76 ATOM 32 CA GLY J 65 -24.136 -16.482 -46.066 1.00 23.59 ATOM 33 CA SER J 66 -26.336 -18.357 -48.477 1.00 80.94 ATOM 34 CA GLY J 67 -28.657 -17.565 -51.316 1.00 23.25 ATOM 35 CA VAL J 68 -31.041 -19.271 -53.681 1.00 60.88 ATOM 36 CA ILE J 69 -31.025 -19.177 -57.443 1.00102.17 ATOM 37 CA ILE J 70 -34.395 -17.824 -58.480 1.00 85.20 ATOM 38 CA ASN J 71 -33.667 -17.509 -62.172 1.00 41.15 ATOM 39 CA ALA J 72 -31.035 -19.651 -63.791 1.00 32.52 ATOM 40 CA SER J 73 -30.919 -17.768 -67.041 1.00 31.03 ATOM 41 CA LYS J 74 -30.662 -14.356 -65.460 1.00128.84 ATOM 42 CA GLY J 75 -28.607 -15.616 -62.606 1.00 28.75 ATOM 43 CA TYR J 76 -30.739 -13.898 -60.012 1.00 64.67 ATOM 44 CA VAL J 77 -30.005 -15.016 -56.489 1.00 36.82 ATOM 45 CA LEU J 78 -32.164 -14.133 -53.538 1.00111.65 ATOM 46 CA THR J 79 -30.507 -13.517 -50.208 1.00 49.59 ATOM 47 CA ASN J 80 -30.951 -11.598 -47.023 1.00 57.48 ATOM 48 CA ASN J 81 -30.132 -7.939 -47.062 1.00 56.86 ATOM 49 CA HIS J 82 -28.103 -8.194 -43.911 1.00 56.38 ATOM 50 CA VAL J 83 -25.825 -10.677 -45.548 1.00 67.82 ATOM 51 CA ILE J 84 -25.265 -8.245 -48.427 1.00132.31 ATOM 52 CA ASN J 85 -25.452 -4.855 -46.767 1.00124.85 ATOM 53 CA GLN J 86 -21.813 -4.285 -45.800 1.00 57.74 ATOM 54 CA ALA J 87 -20.495 -6.045 -48.905 1.00 70.22 ATOM 55 CA GLN J 88 -18.100 -4.100 -51.022 1.00137.71 ATOM 56 CA LYS J 89 -17.687 -7.182 -53.189 1.00 38.81 ATOM 57 CA ILE J 90 -19.787 -10.296 -53.456 1.00 44.67 ATOM 58 CA SER J 91 -19.097 -13.739 -54.826 1.00 83.30 ATOM 59 CA ILE J 92 -21.277 -16.778 -55.022 1.00 56.71 ATOM 60 CA GLN J 93 -20.179 -20.360 -54.994 1.00 41.11 ATOM 61 CA LEU J 94 -22.049 -23.353 -56.304 1.00 48.50 ATOM 62 CA ASN J 95 -22.086 -26.740 -54.644 1.00 44.81 ATOM 63 CA ASP J 96 -20.080 -27.978 -57.585 1.00 46.94 ATOM 64 CA GLY J 97 -17.307 -25.613 -56.632 1.00 32.70 ATOM 65 CA ARG J 98 -17.766 -23.138 -59.432 1.00 74.62 ATOM 66 CA GLU J 99 -17.672 -19.567 -58.263 1.00 92.80 ATOM 67 CA PHE J 100 -18.976 -16.378 -59.770 1.00 54.07 ATOM 68 CA ASP J 101 -19.034 -12.650 -59.162 1.00123.76 ATOM 69 CA ALA J 102 -22.300 -11.045 -58.190 1.00 37.65 ATOM 70 CA LYS J 103 -23.691 -7.547 -58.152 1.00 36.88 ATOM 71 CA LEU J 104 -26.454 -6.291 -55.955 1.00 48.58 ATOM 72 CA ILE J 105 -29.525 -5.672 -58.034 1.00103.34 ATOM 73 CA GLY J 106 -31.404 -4.162 -55.137 1.00 24.74 ATOM 74 CA SER J 107 -32.643 -4.899 -51.666 1.00 98.82 ATOM 75 CA ASP J 108 -34.614 -3.441 -48.843 1.00102.19 ATOM 76 CA ASP J 109 -33.994 -3.124 -45.137 1.00 64.69 ATOM 77 CA GLN J 110 -37.429 -3.521 -43.702 1.00104.28 ATOM 78 CA SER J 111 -38.231 -6.986 -45.064 1.00121.31 ATOM 79 CA ASP J 112 -34.534 -7.861 -45.272 1.00 76.17 ATOM 80 CA ILE J 113 -34.633 -9.218 -48.801 1.00 47.23 ATOM 81 CA ALA J 114 -31.962 -8.547 -51.385 1.00 32.59 ATOM 82 CA LEU J 115 -31.521 -9.631 -54.962 1.00 96.54 ATOM 83 CA LEU J 116 -28.176 -10.356 -56.537 1.00 85.58 ATOM 84 CA GLN J 117 -27.250 -11.196 -60.070 1.00115.46 ATOM 85 CA ILE J 118 -24.455 -13.519 -61.052 1.00109.43 ATOM 86 CA GLN J 119 -22.135 -12.170 -63.664 1.00101.02 ATOM 87 CA ASN J 120 -21.957 -14.400 -66.713 1.00 55.67 ATOM 88 CA PRO J 121 -23.972 -17.107 -65.086 1.00 67.39 ATOM 89 CA SER J 122 -23.748 -20.416 -66.871 1.00 40.40 ATOM 90 CA LYS J 123 -25.364 -23.819 -66.494 1.00 48.61 ATOM 91 CA LEU J 124 -27.195 -22.906 -63.351 1.00 77.84 ATOM 92 CA THR J 125 -30.126 -24.617 -61.707 1.00 96.00 ATOM 93 CA GLN J 126 -33.186 -22.804 -60.447 1.00127.99 ATOM 94 CA ILE J 127 -35.388 -23.505 -57.491 1.00106.80 ATOM 95 CA ALA J 128 -39.120 -23.743 -57.873 1.00 33.88 ATOM 96 CA ILE J 129 -41.189 -21.557 -55.626 1.00 71.06 ATOM 97 CA ALA J 130 -44.079 -22.866 -53.592 1.00 35.59 ATOM 98 CA ASP J 131 -47.078 -21.002 -52.270 1.00 39.08 ATOM 99 CA SER J 132 -46.185 -19.964 -48.742 1.00 38.33 ATOM 100 CA ASP J 133 -49.733 -19.170 -47.803 1.00 58.42 ATOM 101 CA LYS J 134 -50.586 -22.848 -48.180 1.00136.90 ATOM 102 CA LEU J 135 -48.226 -23.978 -45.452 1.00 97.14 ATOM 103 CA ARG J 136 -49.676 -25.196 -42.189 1.00 69.11 ATOM 104 CA VAL J 137 -48.009 -26.089 -38.944 1.00 28.07 ATOM 105 CA GLY J 138 -46.695 -29.605 -38.985 1.00 25.78 ATOM 106 CA ASP J 139 -45.574 -29.637 -42.557 1.00122.14 ATOM 107 CA PHE J 140 -42.073 -30.878 -43.217 1.00 60.39 ATOM 108 CA ALA J 141 -39.298 -28.481 -44.028 1.00 31.62 ATOM 109 CA VAL J 142 -35.658 -28.748 -44.967 1.00 30.89 ATOM 110 CA ALA J 143 -33.190 -25.950 -44.590 1.00 27.38 ATOM 111 CA VAL J 144 -30.171 -25.610 -46.799 1.00 29.23 ATOM 112 CA GLY J 145 -27.375 -23.140 -46.331 1.00 19.44 ATOM 113 CA ASN J 146 -23.851 -22.867 -45.090 1.00 56.22 ATOM 114 CA PRO J 147 -23.664 -22.951 -41.385 1.00148.50 ATOM 115 CA PHE J 148 -20.332 -21.849 -39.998 1.00 66.06 ATOM 116 CA GLY J 149 -19.179 -21.740 -43.582 1.00 25.88 ATOM 117 CA LEU J 150 -18.788 -25.496 -43.556 1.00 86.97 ATOM 118 CA GLY J 151 -20.295 -25.913 -46.981 1.00 30.93 ATOM 119 CA GLN J 152 -23.735 -26.772 -48.195 1.00117.67 ATOM 120 CA THR J 153 -25.574 -28.365 -45.335 1.00 40.63 ATOM 121 CA ALA J 154 -29.110 -29.629 -45.124 1.00 26.68 ATOM 122 CA THR J 155 -31.144 -29.868 -41.959 1.00 30.02 ATOM 123 CA SER J 156 -34.638 -31.158 -41.433 1.00 32.64 ATOM 124 CA GLY J 157 -37.566 -30.125 -39.298 1.00 20.54 ATOM 125 CA ILE J 158 -41.215 -29.137 -39.428 1.00 44.87 ATOM 126 CA VAL J 159 -42.947 -25.814 -39.713 1.00 46.65 ATOM 127 CA SER J 160 -43.359 -24.744 -36.112 1.00 51.02 ATOM 128 CA ALA J 161 -45.493 -21.686 -36.682 1.00 39.29 ATOM 129 CA LEU J 162 -46.390 -19.077 -39.234 1.00 61.11 ATOM 130 CA GLY J 163 -47.370 -15.465 -39.239 1.00 35.79 ATOM 131 CA ARG J 164 -44.883 -14.602 -36.559 1.00234.20 ATOM 132 CA SER J 165 -43.800 -11.133 -35.810 1.00 85.25 ATOM 133 CA GLY J 166 -43.042 -8.827 -32.970 1.00 34.37 ATOM 134 CA LEU J 167 -39.620 -10.431 -33.002 1.00105.14 ATOM 135 CA ASN J 168 -38.311 -6.966 -33.761 1.00 65.91 ATOM 136 CA LEU J 169 -35.702 -8.490 -35.973 1.00137.03 ATOM 137 CA GLU J 170 -36.981 -6.562 -38.970 1.00103.23 ATOM 138 CA GLY J 171 -39.294 -3.684 -39.751 1.00 35.65 ATOM 139 CA LEU J 172 -41.651 -5.977 -41.560 1.00 92.55 ATOM 140 CA GLU J 173 -41.920 -9.466 -40.389 1.00173.56 ATOM 141 CA ASN J 174 -43.977 -12.554 -41.015 1.00126.96 ATOM 142 CA PHE J 175 -41.636 -15.291 -40.293 1.00123.22 ATOM 143 CA ILE J 176 -42.289 -18.901 -40.860 1.00246.29 ATOM 144 CA GLN J 177 -40.865 -20.564 -37.827 1.00150.75 ATOM 145 CA THR J 178 -39.069 -23.843 -38.127 1.00133.90 ATOM 146 CA ASP J 179 -37.264 -26.292 -35.839 1.00 88.50 ATOM 147 CA ALA J 180 -34.815 -27.218 -38.584 1.00 45.73 ATOM 148 CA SER J 181 -31.385 -26.392 -37.321 1.00 43.57 ATOM 149 CA ILE J 182 -30.388 -23.004 -38.550 1.00 44.85 ATOM 150 CA ASN J 183 -27.146 -21.420 -37.524 1.00 42.53 ATOM 151 CA ARG J 184 -24.993 -18.522 -38.496 1.00 71.46 ATOM 152 CA GLY J 185 -24.285 -18.699 -42.183 1.00 23.64 ATOM 153 CA ASN J 186 -27.772 -19.996 -42.862 1.00 53.67 ATOM 154 CA ALA J 187 -28.993 -16.521 -43.720 1.00 47.93 ATOM 155 CA GLY J 188 -30.246 -16.163 -47.252 1.00 24.06 ATOM 156 CA GLY J 189 -30.471 -19.925 -47.448 1.00 20.84 ATOM 157 CA ALA J 190 -33.499 -21.836 -48.557 1.00 41.28 ATOM 158 CA LEU J 191 -36.235 -23.499 -46.578 1.00 65.01 ATOM 159 CA LEU J 192 -37.760 -26.185 -48.731 1.00 55.29 ATOM 160 CA ASN J 193 -40.782 -28.422 -48.652 1.00 50.27 ATOM 161 CA LEU J 194 -40.740 -32.135 -49.375 1.00100.62 ATOM 162 CA ASN J 195 -41.200 -31.204 -53.009 1.00 49.46 ATOM 163 CA GLY J 196 -37.968 -29.282 -52.923 1.00 23.68 ATOM 164 CA GLU J 197 -39.910 -26.122 -53.595 1.00 39.45 ATOM 165 CA LEU J 198 -38.907 -22.900 -51.878 1.00126.33 ATOM 166 CA ILE J 199 -41.114 -22.179 -48.868 1.00 76.20 ATOM 167 CA GLY J 200 -39.057 -19.284 -47.532 1.00 30.07 ATOM 168 CA ILE J 201 -35.636 -17.798 -47.014 1.00 77.57 ATOM 169 CA ASN J 202 -34.048 -18.365 -43.640 1.00 69.26 ATOM 170 CA THR J 203 -33.558 -14.950 -42.101 1.00 90.71 ATOM 171 CA ALA J 204 -32.747 -15.396 -38.431 1.00 54.51 ATOM 172 CA ILE J 205 -32.888 -17.413 -35.259 1.00 96.90 ATOM 173 CA LEU J 206 -33.459 -16.878 -31.591 1.00 58.69 ATOM 174 CA ALA J 207 -30.752 -18.466 -29.530 1.00 44.19 ATOM 175 CA PRO J 208 -29.305 -17.447 -26.256 1.00141.80 ATOM 176 CA GLY J 209 -26.147 -19.403 -26.997 1.00 32.68 ATOM 177 CA GLY J 210 -25.783 -18.079 -30.479 1.00 22.40 ATOM 178 CA GLY J 211 -26.312 -21.643 -31.575 1.00 24.42 ATOM 179 CA SER J 212 -29.466 -23.179 -32.953 1.00 56.25 ATOM 180 CA VAL J 213 -32.078 -23.552 -30.230 1.00 66.72 ATOM 181 CA GLY J 214 -34.528 -25.030 -32.666 1.00 39.91 ATOM 182 CA ILE J 215 -36.327 -21.778 -33.214 1.00 71.40 ATOM 183 CA GLY J 216 -35.588 -20.329 -36.606 1.00 30.82 ATOM 184 CA PHE J 217 -37.394 -17.799 -38.719 1.00146.22 ATOM 185 CA ALA J 218 -37.699 -17.519 -42.466 1.00 39.19 ATOM 186 CA ILE J 219 -39.320 -15.039 -44.772 1.00152.64 ATOM 187 CA PRO J 220 -42.020 -16.725 -46.650 1.00100.33 ATOM 188 CA SER J 221 -41.608 -17.662 -50.268 1.00 43.59 ATOM 189 CA ASN J 222 -44.448 -15.515 -51.350 1.00 68.78 ATOM 190 CA MET J 223 -42.534 -12.936 -49.528 1.00134.68 ATOM 191 CA ALA J 224 -39.298 -13.223 -51.359 1.00 53.82 ATOM 192 CA ARG J 225 -40.904 -13.952 -54.669 1.00100.97 ATOM 193 CA THR J 226 -42.774 -10.797 -55.317 1.00 64.61 ATOM 194 CA LEU J 227 -40.270 -8.682 -53.401 1.00113.18 ATOM 195 CA ALA J 228 -37.601 -10.138 -55.599 1.00 44.35 ATOM 196 CA GLN J 229 -39.640 -9.604 -58.695 1.00 76.68 ATOM 197 CA GLN J 230 -39.971 -5.876 -58.469 1.00 74.56 ATOM 198 CA LEU J 231 -36.290 -5.770 -57.712 1.00 51.23 ATOM 199 CA ILE J 232 -35.760 -6.938 -61.223 1.00 61.34 ATOM 200 CA ASP J 233 -39.069 -5.435 -62.380 1.00166.82 ATOM 201 CA PHE J 234 -41.100 -3.365 -62.074 1.00208.36 ATOM 202 CA GLY J 235 -38.849 -1.846 -59.507 1.00 42.90 TER