HEADER HYDROLASE/HYDROLASE 20-NOV-11 4A8A TITLE Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex TITLE 2 with lysozyme COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.107; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA K 35 REMARK 465 SER K 36 REMARK 465 GLN K 37 REMARK 465 GLY K 38 REMARK 465 GLN K 39 REMARK 465 LYS K 40 REMARK 465 ILE K 41 REMARK 465 PRO K 42 REMARK 465 GLU K 43 REMARK 465 GLU K 44 REMARK 465 PHE K 45 REMARK 465 LYS K 46 REMARK 465 LYS K 47 REMARK 465 PHE K 48 REMARK 465 PHE K 49 REMARK 465 GLY K 50 REMARK 465 ASP K 51 REMARK 465 ASP K 52 REMARK 465 LEU K 53 REMARK 465 PRO K 54 REMARK 465 ASP K 55 REMARK 465 GLN K 56 REMARK 465 PRO K 57 DBREF 4A8A K 1 428 UNP P39099 DEGQ_ECOLI 28 455 SEQRES 1 K 225 PRO LEU PRO SER LEU ALA PRO MET LEU GLU LYS VAL LEU SEQRES 2 K 225 PRO ALA VAL VAL SER VAL ARG VAL GLU GLY THR ALA SER SEQRES 3 K 225 GLN GLY GLN LYS ILE PRO GLU GLU PHE LYS LYS PHE PHE SEQRES 4 K 225 GLY ASP ASP LEU PRO ASP GLN PRO ALA GLN PRO PHE GLU SEQRES 5 K 225 GLY LEU GLY SER GLY VAL ILE ILE ASN ALA SER LYS GLY SEQRES 6 K 225 TYR VAL LEU THR ASN ASN HIS VAL ILE ASN GLN ALA GLN SEQRES 7 K 225 LYS ILE SER ILE GLN LEU ASN ASP GLY ARG GLU PHE ASP SEQRES 8 K 225 ALA LYS LEU ILE GLY SER ASP ASP GLN SER ASP ILE ALA SEQRES 9 K 225 LEU LEU GLN ILE GLN ASN PRO SER LYS LEU THR GLN ILE SEQRES 10 K 225 ALA ILE ALA ASP SER ASP LYS LEU ARG VAL GLY ASP PHE SEQRES 11 K 225 ALA VAL ALA VAL GLY ASN PRO PHE GLY LEU GLY GLN THR SEQRES 12 K 225 ALA THR SER GLY ILE VAL SER ALA LEU GLY ARG SER GLY SEQRES 13 K 225 LEU ASN LEU GLU GLY LEU GLU ASN PHE ILE GLN THR ASP SEQRES 14 K 225 ALA SER ILE ASN ARG GLY ASN ALA GLY GLY ALA LEU LEU SEQRES 15 K 225 ASN LEU ASN GLY GLU LEU ILE GLY ILE ASN THR ALA ILE SEQRES 16 K 225 LEU ALA PRO GLY GLY GLY SER VAL GLY ILE GLY PHE ALA SEQRES 17 K 225 ILE PRO SER ASN MET ALA ARG THR LEU ALA GLN GLN LEU SEQRES 18 K 225 ILE ASP PHE GLY ATOM 1 CA PRO K 11 -43.880 -42.870 -40.703 1.00116.59 ATOM 2 CA LEU K 12 -40.822 -44.924 -39.983 1.00101.56 ATOM 3 CA PRO K 13 -41.565 -48.506 -39.717 1.00201.24 ATOM 4 CA SER K 14 -40.584 -49.666 -36.334 1.00117.94 ATOM 5 CA LEU K 15 -37.266 -48.446 -35.155 1.00123.90 ATOM 6 CA ALA K 16 -37.466 -50.763 -32.173 1.00 44.68 ATOM 7 CA PRO K 17 -37.573 -53.977 -34.055 1.00 73.93 ATOM 8 CA MET K 18 -34.393 -53.196 -35.909 1.00 47.20 ATOM 9 CA LEU K 19 -32.809 -51.901 -32.751 1.00 62.75 ATOM 10 CA GLU K 20 -33.499 -54.939 -30.675 1.00 80.84 ATOM 11 CA LYS K 21 -31.292 -57.077 -32.840 1.00 82.46 ATOM 12 CA VAL K 22 -28.533 -54.510 -33.365 1.00112.84 ATOM 13 CA LEU K 23 -28.183 -52.880 -29.966 1.00122.94 ATOM 14 CA PRO K 24 -26.188 -55.586 -28.300 1.00 66.91 ATOM 15 CA ALA K 25 -23.480 -54.903 -30.859 1.00 34.56 ATOM 16 CA VAL K 26 -22.885 -51.419 -29.510 1.00 34.85 ATOM 17 CA VAL K 27 -20.976 -51.278 -26.277 1.00 41.12 ATOM 18 CA SER K 28 -19.814 -48.766 -23.751 1.00 75.43 ATOM 19 CA VAL K 29 -16.128 -48.312 -23.243 1.00 36.56 ATOM 20 CA ARG K 30 -14.739 -47.482 -19.843 1.00131.78 ATOM 21 CA VAL K 31 -11.269 -46.144 -19.434 1.00 40.01 ATOM 22 CA GLU K 32 -8.986 -45.407 -16.531 1.00 40.33 ATOM 23 CA GLY K 33 -5.610 -43.793 -16.643 1.00 21.08 ATOM 24 CA THR K 34 -3.308 -40.963 -15.657 1.00 40.00 ATOM 25 CA ALA K 58 -1.358 -38.067 -13.088 1.00 16.89 ATOM 26 CA GLN K 59 -4.305 -38.515 -10.827 1.00 86.86 ATOM 27 CA PRO K 60 -6.581 -41.233 -11.882 1.00 63.41 ATOM 28 CA PHE K 61 -9.544 -40.297 -13.995 1.00 49.91 ATOM 29 CA GLU K 62 -12.276 -42.264 -15.617 1.00 25.82 ATOM 30 CA GLY K 63 -13.574 -41.628 -19.083 1.00 17.57 ATOM 31 CA LEU K 64 -16.603 -43.002 -20.817 1.00 39.32 ATOM 32 CA GLY K 65 -17.070 -43.676 -24.488 1.00 20.26 ATOM 33 CA SER K 66 -18.678 -46.184 -26.770 1.00 28.05 ATOM 34 CA GLY K 67 -17.551 -48.762 -29.271 1.00 19.85 ATOM 35 CA VAL K 68 -18.974 -51.213 -31.730 1.00 95.84 ATOM 36 CA ILE K 69 -18.351 -54.925 -31.939 1.00106.00 ATOM 37 CA ILE K 70 -16.929 -55.540 -35.369 1.00 93.06 ATOM 38 CA ASN K 71 -16.121 -59.203 -34.900 1.00 46.92 ATOM 39 CA ALA K 72 -17.978 -61.261 -32.371 1.00 28.85 ATOM 40 CA SER K 73 -15.676 -64.224 -32.502 1.00 32.49 ATOM 41 CA LYS K 74 -12.480 -62.271 -32.156 1.00 89.21 ATOM 42 CA GLY K 75 -14.044 -59.699 -29.904 1.00 25.86 ATOM 43 CA TYR K 76 -12.783 -56.756 -31.897 1.00 82.59 ATOM 44 CA VAL K 77 -14.370 -53.485 -30.982 1.00 95.93 ATOM 45 CA LEU K 78 -13.998 -50.280 -32.949 1.00 87.81 ATOM 46 CA THR K 79 -13.691 -47.027 -31.082 1.00 42.29 ATOM 47 CA ASN K 80 -12.277 -43.567 -31.400 1.00 58.83 ATOM 48 CA ASN K 81 -8.620 -43.182 -30.644 1.00 45.67 ATOM 49 CA HIS K 82 -9.297 -40.207 -28.449 1.00 50.60 ATOM 50 CA VAL K 83 -11.482 -42.205 -26.171 1.00113.01 ATOM 51 CA ILE K 84 -8.727 -44.815 -25.767 1.00135.40 ATOM 52 CA ASN K 85 -5.609 -42.664 -25.896 1.00 69.70 ATOM 53 CA GLN K 86 -5.061 -41.897 -22.199 1.00 61.55 ATOM 54 CA ALA K 87 -6.395 -45.222 -20.947 1.00 66.64 ATOM 55 CA GLN K 88 -4.116 -47.347 -18.826 1.00 87.98 ATOM 56 CA LYS K 89 -6.840 -49.953 -18.603 1.00 30.41 ATOM 57 CA ILE K 90 -9.957 -50.427 -20.644 1.00 40.23 ATOM 58 CA SER K 91 -13.163 -52.276 -19.958 1.00 26.39 ATOM 59 CA ILE K 92 -16.156 -52.863 -22.156 1.00100.94 ATOM 60 CA GLN K 93 -19.690 -53.256 -20.966 1.00108.61 ATOM 61 CA LEU K 94 -22.527 -54.797 -22.883 1.00 83.27 ATOM 62 CA ASN K 95 -26.076 -53.553 -22.696 1.00 40.76 ATOM 63 CA ASP K 96 -26.916 -56.795 -20.938 1.00 49.84 ATOM 64 CA GLY K 97 -24.641 -55.763 -18.116 1.00 33.27 ATOM 65 CA ARG K 98 -21.824 -58.166 -18.824 1.00 84.55 ATOM 66 CA GLU K 99 -18.418 -56.575 -18.690 1.00102.24 ATOM 67 CA PHE K 100 -15.076 -57.544 -20.137 1.00 43.33 ATOM 68 CA ASP K 101 -11.490 -56.375 -20.185 1.00 39.06 ATOM 69 CA ALA K 102 -10.015 -55.099 -23.409 1.00 32.23 ATOM 70 CA LYS K 103 -6.595 -54.287 -24.775 1.00142.29 ATOM 71 CA LEU K 104 -5.668 -51.976 -27.598 1.00 72.07 ATOM 72 CA ILE K 105 -4.887 -53.804 -30.765 1.00108.04 ATOM 73 CA GLY K 106 -3.810 -50.588 -32.407 1.00 27.75 ATOM 74 CA SER K 107 -5.029 -47.192 -33.459 1.00 48.46 ATOM 75 CA ASP K 108 -4.057 -44.145 -35.391 1.00 93.66 ATOM 76 CA ASP K 109 -4.221 -40.469 -34.563 1.00 61.47 ATOM 77 CA GLN K 110 -4.899 -38.958 -37.934 1.00 96.81 ATOM 78 CA SER K 111 -8.188 -40.718 -38.677 1.00 66.80 ATOM 79 CA ASP K 112 -8.888 -41.182 -34.968 1.00 72.55 ATOM 80 CA ILE K 113 -9.725 -44.865 -35.267 1.00 55.71 ATOM 81 CA ALA K 114 -8.695 -47.424 -32.691 1.00 30.21 ATOM 82 CA LEU K 115 -9.182 -51.160 -32.496 1.00 83.78 ATOM 83 CA LEU K 116 -9.771 -52.887 -29.219 1.00 72.35 ATOM 84 CA GLN K 117 -10.006 -56.550 -28.415 1.00 59.68 ATOM 85 CA ILE K 118 -12.151 -58.060 -25.728 1.00 48.83 ATOM 86 CA GLN K 119 -10.454 -60.568 -23.526 1.00 97.00 ATOM 87 CA ASN K 120 -12.199 -63.904 -23.418 1.00 49.82 ATOM 88 CA PRO K 121 -15.068 -62.627 -25.468 1.00 62.14 ATOM 89 CA SER K 122 -18.111 -64.849 -25.269 1.00 34.99 ATOM 90 CA LYS K 123 -21.599 -64.797 -26.747 1.00 43.18 ATOM 91 CA LEU K 124 -21.094 -61.503 -28.498 1.00 86.05 ATOM 92 CA THR K 125 -23.164 -59.903 -31.200 1.00116.19 ATOM 93 CA GLN K 126 -21.584 -58.365 -34.248 1.00 54.32 ATOM 94 CA ILE K 127 -22.780 -55.388 -36.215 1.00101.88 ATOM 95 CA ALA K 128 -23.020 -55.549 -39.984 1.00 31.09 ATOM 96 CA ILE K 129 -21.232 -52.886 -41.951 1.00 97.73 ATOM 97 CA ALA K 130 -22.928 -50.943 -44.716 1.00 34.14 ATOM 98 CA ASP K 131 -21.249 -49.293 -47.661 1.00 35.14 ATOM 99 CA SER K 132 -20.718 -45.700 -46.618 1.00 32.27 ATOM 100 CA ASP K 133 -20.087 -44.659 -50.189 1.00 35.73 ATOM 101 CA LYS K 134 -23.701 -45.332 -51.058 1.00 62.56 ATOM 102 CA LEU K 135 -25.055 -42.993 -48.396 1.00 73.84 ATOM 103 CA ARG K 136 -26.640 -39.783 -49.596 1.00 88.54 ATOM 104 CA VAL K 137 -28.094 -36.800 -47.830 1.00 85.14 ATOM 105 CA GLY K 138 -31.543 -37.382 -46.470 1.00 22.46 ATOM 106 CA ASP K 139 -30.869 -40.951 -45.465 1.00 28.67 ATOM 107 CA PHE K 140 -32.100 -41.913 -42.028 1.00 53.88 ATOM 108 CA ALA K 141 -29.571 -42.510 -39.312 1.00 37.94 ATOM 109 CA VAL K 142 -29.646 -43.674 -35.729 1.00 42.89 ATOM 110 CA ALA K 143 -26.870 -43.021 -33.295 1.00 30.02 ATOM 111 CA VAL K 144 -26.145 -45.309 -30.404 1.00 31.54 ATOM 112 CA GLY K 145 -23.690 -44.629 -27.637 1.00 21.68 ATOM 113 CA ASN K 146 -23.539 -43.576 -24.048 1.00 65.49 ATOM 114 CA PRO K 147 -24.067 -39.902 -23.689 1.00 74.07 ATOM 115 CA PHE K 148 -23.100 -38.543 -20.307 1.00 66.86 ATOM 116 CA GLY K 149 -22.423 -42.129 -19.361 1.00 31.34 ATOM 117 CA LEU K 150 -26.132 -42.593 -18.923 1.00 61.50 ATOM 118 CA GLY K 151 -26.146 -46.001 -20.553 1.00 32.69 ATOM 119 CA GLN K 152 -26.944 -47.148 -24.036 1.00113.77 ATOM 120 CA THR K 153 -28.963 -44.461 -25.676 1.00 40.17 ATOM 121 CA ALA K 154 -30.318 -44.254 -29.175 1.00 30.11 ATOM 122 CA THR K 155 -31.100 -41.067 -31.031 1.00 35.99 ATOM 123 CA SER K 156 -32.337 -40.586 -34.516 1.00116.15 ATOM 124 CA GLY K 157 -31.851 -38.156 -37.355 1.00 25.50 ATOM 125 CA ILE K 158 -30.920 -38.015 -41.027 1.00 48.45 ATOM 126 CA VAL K 159 -27.606 -37.685 -42.776 1.00133.09 ATOM 127 CA SER K 160 -27.087 -33.983 -43.077 1.00 49.37 ATOM 128 CA ALA K 161 -24.040 -34.090 -45.285 1.00 57.00 ATOM 129 CA LEU K 162 -21.096 -36.180 -46.250 1.00111.34 ATOM 130 CA GLY K 163 -17.560 -35.714 -47.363 1.00 30.36 ATOM 131 CA ARG K 164 -17.036 -32.974 -44.866 1.00210.55 ATOM 132 CA SER K 165 -13.672 -31.820 -43.802 1.00 78.65 ATOM 133 CA GLY K 166 -11.689 -28.754 -42.985 1.00 38.31 ATOM 134 CA LEU K 167 -13.162 -29.028 -39.516 1.00 61.08 ATOM 135 CA ASN K 168 -9.557 -29.614 -38.451 1.00 93.79 ATOM 136 CA LEU K 169 -10.812 -31.917 -35.787 1.00 49.77 ATOM 137 CA GLU K 170 -8.533 -34.628 -37.153 1.00 84.28 ATOM 138 CA GLY K 171 -5.685 -35.070 -39.607 1.00 38.72 ATOM 139 CA LEU K 172 -7.800 -37.010 -42.039 1.00106.94 ATOM 140 CA GLU K 173 -11.391 -36.070 -42.093 1.00 88.55 ATOM 141 CA ASN K 174 -14.379 -37.123 -44.131 1.00 91.14 ATOM 142 CA PHE K 175 -17.122 -36.932 -41.693 1.00 81.38 ATOM 143 CA ILE K 176 -20.646 -37.925 -42.313 1.00 75.71 ATOM 144 CA GLN K 177 -22.680 -35.167 -40.773 1.00117.89 ATOM 145 CA THR K 178 -25.798 -36.062 -38.869 1.00125.56 ATOM 146 CA ASP K 179 -28.527 -34.245 -36.953 1.00 62.69 ATOM 147 CA ALA K 180 -28.960 -37.179 -34.584 1.00 39.47 ATOM 148 CA SER K 181 -28.215 -35.981 -31.119 1.00 43.67 ATOM 149 CA ILE K 182 -24.636 -36.750 -30.293 1.00 96.26 ATOM 150 CA ASN K 183 -23.169 -35.805 -26.962 1.00 77.62 ATOM 151 CA ARG K 184 -20.049 -36.305 -24.887 1.00 98.78 ATOM 152 CA GLY K 185 -20.351 -40.072 -24.289 1.00 59.14 ATOM 153 CA ASN K 186 -21.134 -40.786 -27.944 1.00 74.34 ATOM 154 CA ALA K 187 -17.582 -41.046 -29.282 1.00 46.32 ATOM 155 CA GLY K 188 -16.745 -44.461 -30.649 1.00 24.14 ATOM 156 CA GLY K 189 -20.447 -45.165 -30.844 1.00 22.49 ATOM 157 CA ALA K 190 -22.266 -46.348 -33.894 1.00 49.95 ATOM 158 CA LEU K 191 -24.259 -44.549 -36.540 1.00194.15 ATOM 159 CA LEU K 192 -26.706 -46.935 -38.029 1.00 67.68 ATOM 160 CA ASN K 193 -28.942 -46.938 -41.051 1.00 73.83 ATOM 161 CA LEU K 194 -32.590 -48.028 -41.112 1.00108.57 ATOM 162 CA ASN K 195 -31.138 -51.470 -41.283 1.00 81.02 ATOM 163 CA GLY K 196 -28.964 -52.551 -38.421 1.00 71.83 ATOM 164 CA GLU K 197 -25.947 -51.651 -40.560 1.00 71.85 ATOM 165 CA LEU K 198 -23.096 -49.449 -39.427 1.00 70.94 ATOM 166 CA ILE K 199 -22.780 -46.275 -41.473 1.00146.82 ATOM 167 CA GLY K 200 -20.001 -44.757 -39.407 1.00 28.87 ATOM 168 CA ILE K 201 -18.444 -44.192 -36.003 1.00 92.07 ATOM 169 CA ASN K 202 -19.528 -41.015 -34.244 1.00 68.32 ATOM 170 CA THR K 203 -16.340 -39.039 -33.731 1.00 83.16 ATOM 171 CA ALA K 204 -17.242 -35.493 -32.769 1.00 54.07 ATOM 172 CA ILE K 205 -19.657 -32.603 -32.760 1.00111.59 ATOM 173 CA LEU K 206 -19.709 -28.863 -33.193 1.00114.67 ATOM 174 CA ALA K 207 -21.422 -27.198 -30.327 1.00 47.43 ATOM 175 CA PRO K 208 -20.806 -23.863 -28.829 1.00 70.92 ATOM 176 CA GLY K 209 -22.541 -25.011 -25.656 1.00 36.92 ATOM 177 CA GLY K 210 -20.721 -28.287 -25.466 1.00 27.03 ATOM 178 CA GLY K 211 -24.104 -29.877 -25.967 1.00 31.93 ATOM 179 CA SER K 212 -25.568 -31.302 -29.149 1.00 66.78 ATOM 180 CA VAL K 213 -26.415 -28.542 -31.609 1.00 72.47 ATOM 181 CA GLY K 214 -27.606 -31.063 -34.124 1.00 37.24 ATOM 182 CA ILE K 215 -24.288 -30.967 -35.926 1.00119.08 ATOM 183 CA GLY K 216 -22.490 -34.247 -35.420 1.00 23.88 ATOM 184 CA PHE K 217 -19.742 -35.914 -37.371 1.00 49.57 ATOM 185 CA ALA K 218 -18.914 -39.550 -37.836 1.00 33.49 ATOM 186 CA ILE K 219 -16.184 -41.434 -39.610 1.00 69.02 ATOM 187 CA PRO K 220 -17.648 -43.398 -42.396 1.00 83.18 ATOM 188 CA SER K 221 -18.106 -47.136 -42.109 1.00 35.69 ATOM 189 CA ASN K 222 -15.946 -47.741 -45.072 1.00 59.30 ATOM 190 CA MET K 223 -13.566 -45.705 -43.131 1.00 97.33 ATOM 191 CA ALA K 224 -13.521 -47.663 -39.945 1.00 50.85 ATOM 192 CA ARG K 225 -13.857 -50.991 -41.624 1.00 90.80 ATOM 193 CA THR K 226 -10.763 -51.148 -43.691 1.00 60.45 ATOM 194 CA LEU K 227 -8.779 -49.083 -41.183 1.00113.82 ATOM 195 CA ALA K 228 -9.856 -51.523 -38.543 1.00 49.89 ATOM 196 CA GLN K 229 -9.047 -54.393 -40.807 1.00133.43 ATOM 197 CA GLN K 230 -5.341 -53.992 -41.069 1.00181.52 ATOM 198 CA LEU K 231 -5.170 -53.127 -37.428 1.00 57.48 ATOM 199 CA ILE K 232 -6.178 -56.731 -37.212 1.00 76.81 ATOM 200 CA ASP K 233 -4.535 -57.653 -40.553 1.00177.00 ATOM 201 CA PHE K 234 -2.740 -57.054 -42.931 1.00155.24 ATOM 202 CA GLY K 235 -1.155 -55.411 -39.973 1.00 51.31 TER