HEADER RIBOSOME 20-JUL-13 4BYU TITLE Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic TITLE 2 Translation Initiation Complex COMPND MOL_ID: 40; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L41-B; COMPND 3 CHAIN: n; EXPDTA ELECTRON MICROSCOPY DBREF 4BYU n 1 25 UNP P0CX87 RL41B_YEAST 1 25 SEQRES 1 n 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 n 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET n 1 -29.329 23.164 19.885 1.00 47.84 ATOM 2 CA MET n 1 -28.701 22.276 20.855 1.00 47.85 ATOM 3 C MET n 1 -28.369 23.018 22.164 1.00 47.77 ATOM 4 O MET n 1 -28.143 24.239 22.151 1.00 47.80 ATOM 5 CB MET n 1 -27.466 21.626 20.245 1.00 48.12 ATOM 6 CG MET n 1 -26.287 22.536 19.890 1.00 48.34 ATOM 7 SD MET n 1 -24.895 21.589 19.109 1.00 48.66 ATOM 8 CE MET n 1 -24.355 20.579 20.469 1.00 48.63 ATOM 9 N ARG n 2 -28.374 22.283 23.283 1.00 46.64 ATOM 10 CA ARG n 2 -28.034 22.859 24.590 1.00 46.56 ATOM 11 C ARG n 2 -26.756 23.658 24.426 1.00 46.78 ATOM 12 O ARG n 2 -25.854 23.249 23.692 1.00 47.01 ATOM 13 CB ARG n 2 -27.897 21.799 25.710 1.00 46.49 ATOM 14 CG ARG n 2 -26.996 22.269 26.874 1.00 46.52 ATOM 15 CD ARG n 2 -27.507 22.052 28.301 1.00 46.30 ATOM 16 NE ARG n 2 -27.397 20.681 28.810 1.00 46.29 ATOM 17 CZ ARG n 2 -26.952 20.320 30.018 1.00 46.25 ATOM 18 NH1 ARG n 2 -26.506 21.198 30.900 1.00 46.23 ATOM 19 NH2 ARG n 2 -26.925 19.038 30.343 1.00 46.23 ATOM 20 N ALA n 3 -26.700 24.821 25.066 1.00 40.67 ATOM 21 CA ALA n 3 -25.584 25.745 24.895 1.00 40.87 ATOM 22 C ALA n 3 -24.303 25.034 25.264 1.00 41.05 ATOM 23 O ALA n 3 -23.349 25.008 24.490 1.00 41.28 ATOM 24 CB ALA n 3 -25.771 26.958 25.759 1.00 40.74 ATOM 25 N LYS n 4 -24.301 24.433 26.447 1.00 51.64 ATOM 26 CA LYS n 4 -23.093 23.818 26.982 1.00 51.80 ATOM 27 C LYS n 4 -22.430 22.924 25.961 1.00 52.02 ATOM 28 O LYS n 4 -21.210 22.846 25.900 1.00 52.23 ATOM 29 CB LYS n 4 -23.400 23.105 28.313 1.00 51.63 ATOM 30 CG LYS n 4 -22.256 22.309 28.841 1.00 51.78 ATOM 31 CD LYS n 4 -22.676 21.485 29.989 1.00 51.60 ATOM 32 CE LYS n 4 -22.385 22.247 31.225 1.00 51.53 ATOM 33 NZ LYS n 4 -22.401 21.347 32.366 1.00 51.43 ATOM 34 N TRP n 5 -23.260 22.311 25.125 1.00 48.63 ATOM 35 CA TRP n 5 -22.804 21.349 24.160 1.00 48.81 ATOM 36 C TRP n 5 -22.363 22.016 22.870 1.00 49.00 ATOM 37 O TRP n 5 -21.408 21.554 22.239 1.00 49.23 ATOM 38 CB TRP n 5 -23.901 20.353 23.854 1.00 48.67 ATOM 39 CG TRP n 5 -24.440 19.559 24.989 1.00 48.48 ATOM 40 CD1 TRP n 5 -25.703 19.079 25.078 1.00 48.26 ATOM 41 CD2 TRP n 5 -23.769 19.140 26.192 1.00 48.48 ATOM 42 NE1 TRP n 5 -25.868 18.382 26.245 1.00 48.13 ATOM 43 CE2 TRP n 5 -24.687 18.385 26.936 1.00 48.26 ATOM 44 CE3 TRP n 5 -22.480 19.317 26.708 1.00 48.64 ATOM 45 CZ2 TRP n 5 -24.364 17.805 28.172 1.00 48.20 ATOM 46 CZ3 TRP n 5 -22.164 18.723 27.937 1.00 48.58 ATOM 47 CH2 TRP n 5 -23.110 17.991 28.653 1.00 48.36 ATOM 48 N ARG n 6 -23.058 23.080 22.471 1.00 71.57 ATOM 49 CA ARG n 6 -22.571 23.940 21.402 1.00 71.75 ATOM 50 C ARG n 6 -21.145 24.307 21.731 1.00 71.95 ATOM 51 O ARG n 6 -20.230 24.115 20.942 1.00 72.18 ATOM 52 CB ARG n 6 -23.394 25.213 21.331 1.00 71.60 ATOM 53 CG ARG n 6 -23.996 25.532 19.980 1.00 71.63 ATOM 54 CD ARG n 6 -23.120 26.441 19.120 1.00 71.85 ATOM 55 NE ARG n 6 -23.740 27.773 18.960 1.00 71.75 ATOM 56 CZ ARG n 6 -23.451 28.667 17.994 1.00 71.89 ATOM 57 NH1 ARG n 6 -22.555 28.391 17.028 1.00 72.13 ATOM 58 NH2 ARG n 6 -24.088 29.844 17.981 1.00 71.77 ATOM 59 N LYS n 7 -20.987 24.837 22.931 1.00 45.19 ATOM 60 CA LYS n 7 -19.718 25.178 23.494 1.00 45.35 ATOM 61 C LYS n 7 -18.746 24.043 23.333 1.00 45.54 ATOM 62 O LYS n 7 -17.630 24.274 22.878 1.00 45.77 ATOM 63 CB LYS n 7 -19.904 25.472 24.955 1.00 45.17 ATOM 64 CG LYS n 7 -18.662 25.919 25.647 1.00 45.31 ATOM 65 CD LYS n 7 -19.034 26.684 26.887 1.00 45.12 ATOM 66 CE LYS n 7 -17.788 27.101 27.594 1.00 45.26 ATOM 67 NZ LYS n 7 -18.074 28.098 28.666 1.00 45.10 ATOM 68 N LYS n 8 -19.128 22.816 23.674 1.00 37.10 ATOM 69 CA LYS n 8 -18.194 21.691 23.527 1.00 37.29 ATOM 70 C LYS n 8 -17.863 21.449 22.040 1.00 37.49 ATOM 71 O LYS n 8 -16.703 21.215 21.650 1.00 37.72 ATOM 72 CB LYS n 8 -18.774 20.441 24.175 1.00 37.14 ATOM 73 CG LYS n 8 -17.925 19.160 24.151 1.00 37.29 ATOM 74 CD LYS n 8 -18.779 18.012 24.714 1.00 37.11 ATOM 75 CE LYS n 8 -18.611 17.811 26.198 1.00 36.99 ATOM 76 NZ LYS n 8 -17.299 17.179 26.573 1.00 37.18 ATOM 77 N ARG n 9 -18.899 21.543 21.222 1.00 45.03 ATOM 78 CA ARG n 9 -18.741 21.466 19.793 1.00 45.20 ATOM 79 C ARG n 9 -17.692 22.429 19.309 1.00 45.41 ATOM 80 O ARG n 9 -16.852 22.046 18.498 1.00 45.64 ATOM 81 CB ARG n 9 -20.072 21.763 19.065 1.00 45.04 ATOM 82 CG ARG n 9 -20.069 21.425 17.589 1.00 45.19 ATOM 83 CD ARG n 9 -21.115 22.199 16.877 1.00 45.08 ATOM 84 NE ARG n 9 -22.255 21.504 16.242 1.00 44.96 ATOM 85 CZ ARG n 9 -22.776 20.319 16.567 1.00 44.85 ATOM 86 NH1 ARG n 9 -22.272 19.558 17.569 1.00 44.85 ATOM 87 NH2 ARG n 9 -23.833 19.900 15.856 1.00 44.75 ATOM 88 N THR n 10 -17.742 23.684 19.764 1.00 54.72 ATOM 89 CA THR n 10 -16.883 24.674 19.129 1.00 54.92 ATOM 90 C THR n 10 -15.431 24.538 19.600 1.00 55.12 ATOM 91 O THR n 10 -14.502 24.801 18.838 1.00 55.35 ATOM 92 CB THR n 10 -17.394 26.144 19.223 1.00 54.81 ATOM 93 OG1 THR n 10 -16.883 26.766 20.403 1.00 54.77 ATOM 94 CG2 THR n 10 -18.929 26.248 19.158 1.00 54.56 ATOM 95 N ARG n 11 -15.251 24.097 20.842 1.00 70.37 ATOM 96 CA ARG n 11 -13.931 23.772 21.337 1.00 70.55 ATOM 97 C ARG n 11 -13.305 22.703 20.485 1.00 70.75 ATOM 98 O ARG n 11 -12.126 22.757 20.153 1.00 70.98 ATOM 99 CB ARG n 11 -14.007 23.290 22.775 1.00 70.40 ATOM 100 CG ARG n 11 -14.285 24.422 23.718 1.00 70.25 ATOM 101 CD ARG n 11 -13.428 24.367 24.969 1.00 70.28 ATOM 102 NE ARG n 11 -13.589 25.584 25.786 1.00 70.16 ATOM 103 CZ ARG n 11 -14.358 25.690 26.877 1.00 69.92 ATOM 104 NH1 ARG n 11 -15.085 24.642 27.309 1.00 69.77 ATOM 105 NH2 ARG n 11 -14.399 26.853 27.538 1.00 69.84 ATOM 106 N ARG n 12 -14.109 21.708 20.154 1.00 54.68 ATOM 107 CA ARG n 12 -13.648 20.625 19.311 1.00 54.85 ATOM 108 C ARG n 12 -13.277 21.166 17.957 1.00 55.04 ATOM 109 O ARG n 12 -12.230 20.841 17.440 1.00 55.27 ATOM 110 CB ARG n 12 -14.734 19.592 19.135 1.00 54.69 ATOM 111 CG ARG n 12 -14.986 18.812 20.358 1.00 54.54 ATOM 112 CD ARG n 12 -16.073 17.786 20.094 1.00 54.39 ATOM 113 NE ARG n 12 -16.349 16.959 21.266 1.00 54.24 ATOM 114 CZ ARG n 12 -17.493 16.330 21.456 1.00 54.03 ATOM 115 NH1 ARG n 12 -18.454 16.449 20.544 1.00 53.96 ATOM 116 NH2 ARG n 12 -17.656 15.595 22.555 1.00 53.90 ATOM 117 N LEU n 13 -14.140 21.997 17.378 1.00 50.99 ATOM 118 CA LEU n 13 -13.871 22.524 16.061 1.00 51.16 ATOM 119 C LEU n 13 -12.521 23.214 16.044 1.00 51.39 ATOM 120 O LEU n 13 -11.770 23.059 15.095 1.00 51.61 ATOM 121 CB LEU n 13 -14.970 23.487 15.646 1.00 51.01 ATOM 122 CG LEU n 13 -15.381 23.548 14.163 1.00 51.09 ATOM 123 CD1 LEU n 13 -15.989 24.876 13.887 1.00 51.00 ATOM 124 CD2 LEU n 13 -14.234 23.254 13.108 1.00 51.39 ATOM 125 N LYS n 14 -12.225 23.951 17.118 1.00 59.59 ATOM 126 CA LYS n 14 -10.991 24.728 17.268 1.00 59.78 ATOM 127 C LYS n 14 -9.716 23.898 17.273 1.00 60.00 ATOM 128 O LYS n 14 -8.737 24.259 16.629 1.00 60.23 ATOM 129 CB LYS n 14 -11.034 25.574 18.525 1.00 59.64 ATOM 130 CG LYS n 14 -11.838 26.813 18.343 1.00 59.51 ATOM 131 CD LYS n 14 -11.722 27.772 19.535 1.00 59.40 ATOM 132 CE LYS n 14 -10.366 28.480 19.508 1.00 59.63 ATOM 133 NZ LYS n 14 -10.250 29.438 20.655 1.00 59.53 ATOM 134 N ARG n 15 -9.712 22.797 18.009 1.00 67.55 ATOM 135 CA ARG n 15 -8.544 21.949 18.029 1.00 67.75 ATOM 136 C ARG n 15 -8.285 21.419 16.632 1.00 67.94 ATOM 137 O ARG n 15 -7.147 21.396 16.195 1.00 68.18 ATOM 138 CB ARG n 15 -8.715 20.834 19.048 1.00 67.63 ATOM 139 CG ARG n 15 -8.801 21.386 20.441 1.00 67.47 ATOM 140 CD ARG n 15 -8.308 20.386 21.445 1.00 67.47 ATOM 141 NE ARG n 15 -9.202 19.247 21.452 1.00 67.33 ATOM 142 CZ ARG n 15 -10.356 19.223 22.133 1.00 67.06 ATOM 143 NH1 ARG n 15 -10.732 20.282 22.871 1.00 66.92 ATOM 144 NH2 ARG n 15 -11.143 18.136 22.073 1.00 66.95 ATOM 145 N LYS n 16 -9.349 21.027 15.933 1.00 58.94 ATOM 146 CA LYS n 16 -9.264 20.615 14.549 1.00 59.10 ATOM 147 C LYS n 16 -8.728 21.733 13.659 1.00 59.27 ATOM 148 O LYS n 16 -7.915 21.500 12.754 1.00 59.50 ATOM 149 CB LYS n 16 -10.610 20.156 14.034 1.00 58.93 ATOM 150 CG LYS n 16 -10.696 18.647 13.874 1.00 58.94 ATOM 151 CD LYS n 16 -11.926 18.198 13.009 1.00 58.82 ATOM 152 CE LYS n 16 -12.172 19.090 11.726 1.00 58.90 ATOM 153 NZ LYS n 16 -13.651 19.242 11.301 1.00 58.69 ATOM 154 N ARG n 17 -9.155 22.959 13.906 1.00 60.45 ATOM 155 CA ARG n 17 -8.632 24.022 13.093 1.00 60.61 ATOM 156 C ARG n 17 -7.174 24.276 13.418 1.00 60.83 ATOM 157 O ARG n 17 -6.369 24.372 12.515 1.00 61.06 ATOM 158 CB ARG n 17 -9.504 25.270 13.142 1.00 60.45 ATOM 159 CG ARG n 17 -10.644 25.196 12.141 1.00 60.35 ATOM 160 CD ARG n 17 -11.057 26.539 11.619 1.00 60.32 ATOM 161 NE ARG n 17 -12.133 27.040 12.462 1.00 60.05 ATOM 162 CZ ARG n 17 -13.427 27.058 12.123 1.00 59.86 ATOM 163 NH1 ARG n 17 -13.844 26.629 10.918 1.00 59.92 ATOM 164 NH2 ARG n 17 -14.302 27.538 12.995 1.00 59.62 ATOM 165 N ARG n 18 -6.818 24.340 14.693 1.00 90.37 ATOM 166 CA ARG n 18 -5.422 24.498 15.063 1.00 90.57 ATOM 167 C ARG n 18 -4.528 23.485 14.375 1.00 90.80 ATOM 168 O ARG n 18 -3.441 23.809 13.910 1.00 91.03 ATOM 169 CB ARG n 18 -5.264 24.335 16.557 1.00 90.45 ATOM 170 CG ARG n 18 -5.334 25.621 17.317 1.00 90.35 ATOM 171 CD ARG n 18 -4.741 25.433 18.701 1.00 90.32 ATOM 172 NE ARG n 18 -3.273 25.344 18.679 1.00 90.57 ATOM 173 CZ ARG n 18 -2.513 25.070 19.746 1.00 90.60 ATOM 174 NH1 ARG n 18 -3.083 24.849 20.940 1.00 90.39 ATOM 175 NH2 ARG n 18 -1.180 25.008 19.620 1.00 90.85 ATOM 176 N LYS n 19 -5.021 22.254 14.314 1.00 63.32 ATOM 177 CA LYS n 19 -4.302 21.121 13.765 1.00 63.51 ATOM 178 C LYS n 19 -4.109 21.232 12.273 1.00 63.70 ATOM 179 O LYS n 19 -2.991 21.103 11.778 1.00 63.94 ATOM 180 CB LYS n 19 -5.056 19.839 14.050 1.00 63.37 ATOM 181 CG LYS n 19 -4.298 18.818 14.887 1.00 63.42 ATOM 182 CD LYS n 19 -4.655 18.913 16.381 1.00 63.21 ATOM 183 CE LYS n 19 -3.994 17.798 17.227 1.00 63.25 ATOM 184 NZ LYS n 19 -4.657 16.439 17.187 1.00 63.15 ATOM 185 N VAL n 20 -5.186 21.464 11.536 1.00 49.67 ATOM 186 CA VAL n 20 -5.023 21.602 10.084 1.00 49.84 ATOM 187 C VAL n 20 -4.113 22.736 9.718 1.00 50.03 ATOM 188 O VAL n 20 -3.288 22.635 8.831 1.00 50.26 ATOM 189 CB VAL n 20 -6.301 21.874 9.331 1.00 49.70 ATOM 190 CG1 VAL n 20 -6.011 21.549 7.897 1.00 49.90 ATOM 191 CG2 VAL n 20 -7.450 21.012 9.838 1.00 49.46 ATOM 192 N ARG n 21 -4.272 23.854 10.395 1.00 45.30 ATOM 193 CA ARG n 21 -3.330 24.944 10.171 1.00 45.48 ATOM 194 C ARG n 21 -1.850 24.511 10.439 1.00 45.71 ATOM 195 O ARG n 21 -0.940 24.968 9.757 1.00 45.93 ATOM 196 CB ARG n 21 -3.774 26.223 10.915 1.00 45.31 ATOM 197 CG ARG n 21 -2.718 27.302 10.926 1.00 45.49 ATOM 198 CD ARG n 21 -3.157 28.664 10.454 1.00 45.45 ATOM 199 NE ARG n 21 -3.194 29.586 11.577 1.00 45.32 ATOM 200 CZ ARG n 21 -2.711 30.821 11.576 1.00 45.39 ATOM 201 NH1 ARG n 21 -2.151 31.319 10.491 1.00 45.59 ATOM 202 NH2 ARG n 21 -2.797 31.549 12.677 1.00 45.26 ATOM 203 N ALA n 22 -1.646 23.590 11.381 1.00 61.64 ATOM 204 CA ALA n 22 -0.314 23.167 11.832 1.00 61.82 ATOM 205 C ALA n 22 0.421 22.351 10.792 1.00 62.06 ATOM 206 O ALA n 22 1.650 22.397 10.697 1.00 62.29 ATOM 207 CB ALA n 22 -0.432 22.357 13.082 1.00 61.69 ATOM 208 N ARG n 23 -0.353 21.585 10.031 1.00 65.58 ATOM 209 CA ARG n 23 0.101 20.866 8.856 1.00 65.79 ATOM 210 C ARG n 23 1.051 21.674 7.949 1.00 66.04 ATOM 211 O ARG n 23 1.751 21.132 7.102 1.00 66.25 ATOM 212 CB ARG n 23 -1.137 20.520 8.064 1.00 65.66 ATOM 213 CG ARG n 23 -1.210 19.152 7.664 1.00 65.70 ATOM 214 CD ARG n 23 -2.342 18.451 8.323 1.00 65.44 ATOM 215 NE ARG n 23 -3.397 18.200 7.349 1.00 65.36 ATOM 216 CZ ARG n 23 -3.278 17.457 6.235 1.00 65.50 ATOM 217 NH1 ARG n 23 -2.080 16.868 5.933 1.00 65.75 ATOM 218 NH2 ARG n 23 -4.367 17.319 5.417 1.00 65.40 ATOM 219 N SER n 24 1.069 22.985 8.126 1.00 68.95 ATOM 220 CA SER n 24 1.787 23.870 7.251 1.00 69.15 ATOM 221 C SER n 24 2.802 24.565 8.126 1.00 69.23 ATOM 222 O SER n 24 3.601 25.376 7.634 1.00 69.42 ATOM 223 CB SER n 24 0.801 24.874 6.669 1.00 69.03 ATOM 224 OG SER n 24 -0.540 24.463 6.967 1.00 68.77 ATOM 225 N LYS n 25 2.774 24.205 9.420 1.00 99.11 ATOM 226 CA LYS n 25 3.539 24.833 10.526 1.00 99.12 ATOM 227 C LYS n 25 2.978 26.213 10.914 1.00 98.97 ATOM 228 O LYS n 25 1.932 26.661 10.404 1.00 98.84 ATOM 229 CB LYS n 25 5.065 24.893 10.266 1.00 99.42 ATOM 230 CG LYS n 25 5.677 23.668 9.544 1.00 99.61 ATOM 231 CD LYS n 25 5.915 22.442 10.449 1.00 99.57 ATOM 232 CE LYS n 25 6.672 21.328 9.682 1.00 99.79 ATOM 233 NZ LYS n 25 7.559 20.456 10.535 1.00 99.86 TER