HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 4F6M TITLE Crystal structure of Kaiso zinc finger DNA binding domain in complex TITLE 2 with Kaiso binding site DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional regulator Kaiso; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: zinc finger DNA binding ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.40 ANGSTORMS DBREF 4F6M A 472 604 UNP Q86T24 KAISO_HUMAN 472 604 SEQRES 1 A 25 LYS LYS TYR PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO SEQRES 2 A 25 LEU ALA GLU TYR ARG THR LYS HIS GLU ILE HIS HIS ATOM 1 N LYS A 520 0.905 76.228 27.775 1.00 69.36 ATOM 2 CA LYS A 520 0.713 74.841 27.396 1.00 68.67 ATOM 3 C LYS A 520 0.699 73.949 28.635 1.00 66.83 ATOM 4 O LYS A 520 1.382 74.230 29.620 1.00 64.86 ATOM 5 CB LYS A 520 1.750 74.404 26.354 1.00 66.75 ATOM 6 CG LYS A 520 1.385 74.837 24.911 1.00 70.39 ATOM 7 CD LYS A 520 2.564 74.667 23.935 1.00 70.10 ATOM 8 CE LYS A 520 3.330 75.991 23.724 1.00 70.66 ATOM 9 NZ LYS A 520 2.678 76.891 22.713 1.00 74.68 ATOM 10 N LYS A 521 -0.133 72.913 28.597 1.00 67.90 ATOM 11 CA LYS A 521 -0.261 71.973 29.700 1.00 66.94 ATOM 12 C LYS A 521 0.197 70.598 29.241 1.00 64.76 ATOM 13 O LYS A 521 -0.129 70.175 28.121 1.00 65.90 ATOM 14 CB LYS A 521 -1.716 71.892 30.183 1.00 71.13 ATOM 15 CG LYS A 521 -1.983 72.498 31.556 1.00 72.49 ATOM 16 CD LYS A 521 -2.258 73.994 31.482 1.00 75.16 ATOM 17 CE LYS A 521 -2.672 74.557 32.838 1.00 77.00 ATOM 18 NZ LYS A 521 -3.325 75.887 32.678 1.00 80.91 ATOM 19 N TYR A 522 0.938 69.891 30.093 1.00 61.34 ATOM 20 CA TYR A 522 1.337 68.534 29.742 1.00 59.34 ATOM 21 C TYR A 522 0.879 67.508 30.781 1.00 59.55 ATOM 22 O TYR A 522 1.658 67.107 31.632 1.00 57.09 ATOM 23 CB TYR A 522 2.843 68.464 29.461 1.00 55.76 ATOM 24 CG TYR A 522 3.289 69.402 28.357 1.00 55.67 ATOM 25 CD1 TYR A 522 3.230 69.014 27.018 1.00 56.76 ATOM 26 CD2 TYR A 522 3.749 70.687 28.648 1.00 55.34 ATOM 27 CE1 TYR A 522 3.630 69.880 25.992 1.00 56.60 ATOM 28 CE2 TYR A 522 4.152 71.556 27.631 1.00 55.32 ATOM 29 CZ TYR A 522 4.090 71.141 26.313 1.00 56.26 ATOM 30 OH TYR A 522 4.486 71.985 25.311 1.00 58.06 ATOM 31 N PRO A 523 -0.404 67.089 30.708 1.00 62.73 ATOM 32 CA PRO A 523 -0.966 66.145 31.677 1.00 63.61 ATOM 33 C PRO A 523 -0.565 64.696 31.449 1.00 61.49 ATOM 34 O PRO A 523 -0.565 64.211 30.307 1.00 61.18 ATOM 35 CB PRO A 523 -2.488 66.294 31.479 1.00 68.42 ATOM 36 CG PRO A 523 -2.649 66.753 30.083 1.00 69.57 ATOM 37 CD PRO A 523 -1.437 67.616 29.792 1.00 66.24 ATOM 38 N CYS A 524 -0.236 64.013 32.544 1.00 60.16 ATOM 39 CA CYS A 524 -0.037 62.567 32.542 1.00 58.76 ATOM 40 C CYS A 524 -1.344 61.912 32.105 1.00 63.08 ATOM 41 O CYS A 524 -2.434 62.322 32.550 1.00 66.03 ATOM 42 CB CYS A 524 0.347 62.099 33.945 1.00 57.63 ATOM 43 SG CYS A 524 0.576 60.332 34.124 1.00 55.24 ATOM 44 N ARG A 525 -1.262 60.917 31.221 1.00 63.15 ATOM 45 CA ARG A 525 -2.503 60.236 30.803 1.00 67.64 ATOM 46 C ARG A 525 -2.894 59.089 31.763 1.00 68.64 ATOM 47 O ARG A 525 -3.946 58.452 31.588 1.00 72.72 ATOM 48 CB ARG A 525 -2.504 59.847 29.300 1.00 68.09 ATOM 49 CG ARG A 525 -2.061 58.414 28.922 1.00 68.88 ATOM 50 CD ARG A 525 -0.571 58.338 28.475 1.00 67.86 ATOM 51 NE ARG A 525 -0.391 57.370 27.390 1.00 69.20 ATOM 52 CZ ARG A 525 0.461 57.494 26.369 1.00 67.89 ATOM 53 NH1 ARG A 525 1.260 58.554 26.256 1.00 63.98 ATOM 54 NH2 ARG A 525 0.506 56.529 25.446 1.00 69.61 ATOM 55 N TYR A 526 -2.076 58.896 32.802 1.00 65.64 ATOM 56 CA TYR A 526 -2.251 57.839 33.798 1.00 66.65 ATOM 57 C TYR A 526 -2.657 58.330 35.185 1.00 68.86 ATOM 58 O TYR A 526 -3.191 57.543 35.975 1.00 70.97 ATOM 59 CB TYR A 526 -0.981 57.001 33.949 1.00 62.63 ATOM 60 CG TYR A 526 -0.586 56.262 32.711 1.00 61.87 ATOM 61 CD1 TYR A 526 0.505 56.672 31.960 1.00 59.68 ATOM 62 CD2 TYR A 526 -1.304 55.156 32.276 1.00 65.13 ATOM 63 CE1 TYR A 526 0.894 55.981 30.813 1.00 60.20 ATOM 64 CE2 TYR A 526 -0.940 54.471 31.120 1.00 64.90 ATOM 65 CZ TYR A 526 0.158 54.891 30.391 1.00 63.20 ATOM 66 OH TYR A 526 0.540 54.215 29.246 1.00 63.97 ATOM 67 N CYS A 527 -2.392 59.603 35.493 1.00 68.43 ATOM 68 CA CYS A 527 -2.793 60.173 36.791 1.00 71.41 ATOM 69 C CYS A 527 -3.096 61.670 36.723 1.00 72.73 ATOM 70 O CYS A 527 -3.304 62.215 35.643 1.00 72.99 ATOM 71 CB CYS A 527 -1.754 59.877 37.874 1.00 68.83 ATOM 72 SG CYS A 527 -0.307 60.943 37.788 1.00 66.15 ATOM 73 N GLU A 528 -3.126 62.330 37.880 1.00 74.35 ATOM 74 CA GLU A 528 -3.515 63.744 37.964 1.00 76.35 ATOM 75 C GLU A 528 -2.390 64.747 37.710 1.00 72.26 ATOM 76 O GLU A 528 -2.644 65.945 37.638 1.00 73.45 ATOM 77 CB GLU A 528 -4.110 64.049 39.332 1.00 80.41 ATOM 78 CG GLU A 528 -5.564 63.679 39.498 1.00 87.74 ATOM 79 CD GLU A 528 -5.846 63.174 40.908 1.00 92.78 ATOM 80 OE1 GLU A 528 -6.967 63.399 41.421 1.00 96.48 ATOM 81 OE2 GLU A 528 -4.914 62.553 41.494 1.00 91.62 ATOM 82 N LYS A 529 -1.151 64.285 37.582 1.00 67.74 ATOM 83 CA LYS A 529 -0.055 65.243 37.443 1.00 64.40 ATOM 84 C LYS A 529 -0.025 65.980 36.108 1.00 62.77 ATOM 85 O LYS A 529 -0.381 65.447 35.062 1.00 62.31 ATOM 86 CB LYS A 529 1.291 64.629 37.819 1.00 61.02 ATOM 87 CG LYS A 529 1.431 64.444 39.327 1.00 64.07 ATOM 88 CD LYS A 529 2.789 63.881 39.728 1.00 63.81 ATOM 89 CE LYS A 529 2.773 63.487 41.213 1.00 68.11 ATOM 90 NZ LYS A 529 3.894 62.533 41.520 1.00 67.56 ATOM 91 N VAL A 530 0.365 67.244 36.188 1.00 62.43 ATOM 92 CA VAL A 530 0.452 68.143 35.043 1.00 61.72 ATOM 93 C VAL A 530 1.856 68.739 35.052 1.00 58.32 ATOM 94 O VAL A 530 2.348 69.150 36.103 1.00 58.22 ATOM 95 CB VAL A 530 -0.622 69.252 35.140 1.00 65.66 ATOM 96 CG1 VAL A 530 -0.608 70.142 33.908 1.00 65.43 ATOM 97 CG2 VAL A 530 -2.000 68.631 35.323 1.00 69.27 ATOM 98 N PHE A 531 2.500 68.763 33.886 1.00 56.00 ATOM 99 CA PHE A 531 3.903 69.145 33.774 1.00 52.74 ATOM 100 C PHE A 531 4.114 70.350 32.876 1.00 52.82 ATOM 101 O PHE A 531 3.425 70.489 31.880 1.00 54.58 ATOM 102 CB PHE A 531 4.716 67.967 33.232 1.00 50.01 ATOM 103 CG PHE A 531 4.869 66.852 34.209 1.00 49.63 ATOM 104 CD1 PHE A 531 3.984 65.784 34.201 1.00 50.61 ATOM 105 CD2 PHE A 531 5.885 66.881 35.164 1.00 48.55 ATOM 106 CE1 PHE A 531 4.113 64.745 35.113 1.00 49.76 ATOM 107 CE2 PHE A 531 6.018 65.851 36.087 1.00 47.98 ATOM 108 CZ PHE A 531 5.117 64.778 36.056 1.00 48.99 ATOM 109 N PRO A 532 5.097 71.208 33.203 1.00 51.46 ATOM 110 CA PRO A 532 5.331 72.368 32.367 1.00 51.77 ATOM 111 C PRO A 532 6.135 72.081 31.087 1.00 49.97 ATOM 112 O PRO A 532 6.235 72.962 30.244 1.00 51.13 ATOM 113 CB PRO A 532 6.120 73.303 33.296 1.00 51.40 ATOM 114 CG PRO A 532 6.902 72.366 34.169 1.00 49.23 ATOM 115 CD PRO A 532 6.009 71.174 34.368 1.00 50.32 ATOM 116 N LEU A 533 6.720 70.893 30.952 1.00 47.58 ATOM 117 CA LEU A 533 7.455 70.498 29.731 1.00 46.33 ATOM 118 C LEU A 533 7.038 69.100 29.255 1.00 46.26 ATOM 119 O LEU A 533 6.847 68.185 30.069 1.00 45.13 ATOM 120 CB LEU A 533 8.992 70.518 29.951 1.00 43.93 ATOM 121 CG LEU A 533 9.845 71.800 29.803 1.00 43.73 ATOM 122 CD1 LEU A 533 9.486 72.866 30.820 1.00 42.98 ATOM 123 CD2 LEU A 533 11.333 71.467 29.908 1.00 40.58 ATOM 124 N ALA A 534 6.939 68.928 27.938 1.00 47.11 ATOM 125 CA ALA A 534 6.616 67.626 27.365 1.00 47.41 ATOM 126 C ALA A 534 7.575 66.521 27.829 1.00 45.17 ATOM 127 O ALA A 534 7.121 65.432 28.232 1.00 45.43 ATOM 128 CB ALA A 534 6.555 67.695 25.855 1.00 48.80 ATOM 129 N GLU A 535 8.884 66.780 27.814 1.00 43.50 ATOM 130 CA GLU A 535 9.843 65.723 28.211 1.00 41.65 ATOM 131 C GLU A 535 9.631 65.272 29.659 1.00 40.64 ATOM 132 O GLU A 535 9.789 64.090 29.935 1.00 40.23 ATOM 133 CB GLU A 535 11.322 66.087 27.946 1.00 40.43 ATOM 134 CG GLU A 535 11.863 67.254 28.846 1.00 40.90 ATOM 135 CD GLU A 535 13.376 67.518 28.703 1.00 40.85 ATOM 136 OE1 GLU A 535 13.896 67.574 27.574 1.00 39.78 ATOM 137 OE2 GLU A 535 14.050 67.688 29.747 1.00 41.22 ATOM 138 N TYR A 536 9.248 66.179 30.563 1.00 40.74 ATOM 139 CA TYR A 536 9.032 65.798 31.957 1.00 40.46 ATOM 140 C TYR A 536 7.861 64.815 32.085 1.00 41.86 ATOM 141 O TYR A 536 7.948 63.839 32.855 1.00 41.30 ATOM 142 CB TYR A 536 8.788 66.997 32.888 1.00 41.46 ATOM 143 CG TYR A 536 9.860 68.085 32.966 1.00 41.10 ATOM 144 CD1 TYR A 536 11.134 67.922 32.414 1.00 39.52 ATOM 145 CD2 TYR A 536 9.603 69.268 33.647 1.00 41.24 ATOM 146 CE1 TYR A 536 12.096 68.928 32.501 1.00 38.25 ATOM 147 CE2 TYR A 536 10.545 70.261 33.739 1.00 41.72 ATOM 148 CZ TYR A 536 11.789 70.089 33.162 1.00 40.23 ATOM 149 OH TYR A 536 12.708 71.091 33.267 1.00 40.16 ATOM 150 N ARG A 537 6.784 65.058 31.330 1.00 43.42 ATOM 151 CA ARG A 537 5.640 64.168 31.345 1.00 45.25 ATOM 152 C ARG A 537 6.015 62.802 30.777 1.00 44.34 ATOM 153 O ARG A 537 5.668 61.774 31.348 1.00 44.47 ATOM 154 CB ARG A 537 4.439 64.745 30.603 1.00 47.94 ATOM 155 CG ARG A 537 3.374 63.683 30.307 1.00 49.61 ATOM 156 CD ARG A 537 2.249 64.186 29.481 1.00 53.25 ATOM 157 NE ARG A 537 2.600 64.465 28.093 1.00 54.18 ATOM 158 CZ ARG A 537 1.797 65.109 27.248 1.00 57.83 ATOM 159 NH1 ARG A 537 0.605 65.525 27.661 1.00 62.26 ATOM 160 NH2 ARG A 537 2.179 65.348 25.997 1.00 57.95 ATOM 161 N THR A 538 6.752 62.784 29.677 1.00 43.74 ATOM 162 CA THR A 538 7.203 61.508 29.132 1.00 43.31 ATOM 163 C THR A 538 7.993 60.684 30.144 1.00 41.57 ATOM 164 O THR A 538 7.742 59.504 30.295 1.00 41.67 ATOM 165 CB THR A 538 8.036 61.681 27.860 1.00 43.08 ATOM 166 OG1 THR A 538 7.300 62.468 26.922 1.00 45.19 ATOM 167 CG2 THR A 538 8.402 60.313 27.260 1.00 41.99 ATOM 168 N LYS A 539 8.943 61.301 30.835 1.00 40.22 ATOM 169 CA LYS A 539 9.740 60.542 31.787 1.00 38.95 ATOM 170 C LYS A 539 8.843 60.039 32.892 1.00 39.90 ATOM 171 O LYS A 539 8.978 58.896 33.336 1.00 40.15 ATOM 172 CB LYS A 539 10.905 61.355 32.375 1.00 37.69 ATOM 173 CG LYS A 539 11.875 61.879 31.365 1.00 37.34 ATOM 174 CD LYS A 539 12.428 60.737 30.514 1.00 39.56 ATOM 175 CE LYS A 539 13.963 60.657 30.629 1.00 39.64 ATOM 176 NZ LYS A 539 14.377 59.232 31.059 1.00 41.77 ATOM 177 N HIS A 540 7.915 60.881 33.319 1.00 40.93 ATOM 178 CA HIS A 540 6.974 60.489 34.343 1.00 42.38 ATOM 179 C HIS A 540 6.114 59.307 33.914 1.00 43.38 ATOM 180 O HIS A 540 5.903 58.393 34.690 1.00 43.58 ATOM 181 CB HIS A 540 6.097 61.665 34.746 1.00 44.10 ATOM 182 CG HIS A 540 4.970 61.286 35.651 1.00 47.00 ATOM 183 ND1 HIS A 540 5.165 60.900 36.959 1.00 47.58 ATOM 184 CD2 HIS A 540 3.640 61.199 35.425 1.00 48.00 ATOM 185 CE1 HIS A 540 3.999 60.617 37.505 1.00 50.46 ATOM 186 NE2 HIS A 540 3.057 60.826 36.607 1.00 54.04 ATOM 187 N GLU A 541 5.634 59.313 32.676 1.00 44.20 ATOM 188 CA GLU A 541 4.767 58.228 32.213 1.00 46.07 ATOM 189 C GLU A 541 5.502 56.906 32.053 1.00 44.80 ATOM 190 O GLU A 541 4.875 55.861 32.161 1.00 45.72 ATOM 191 CB GLU A 541 4.038 58.587 30.926 1.00 47.75 ATOM 192 CG GLU A 541 3.027 59.730 31.067 1.00 50.81 ATOM 193 CD GLU A 541 2.342 60.078 29.746 1.00 54.23 ATOM 194 OE1 GLU A 541 2.905 59.783 28.674 1.00 54.67 ATOM 195 OE2 GLU A 541 1.236 60.650 29.769 1.00 57.69 ATOM 196 N ILE A 542 6.816 56.948 31.793 1.00 42.80 ATOM 197 CA ILE A 542 7.643 55.742 31.786 1.00 41.91 ATOM 198 C ILE A 542 7.701 55.140 33.177 1.00 42.25 ATOM 199 O ILE A 542 7.677 53.939 33.300 1.00 42.65 ATOM 200 CB ILE A 542 9.075 55.990 31.255 1.00 40.37 ATOM 201 CG1 ILE A 542 9.059 56.365 29.773 1.00 42.15 ATOM 202 CG2 ILE A 542 9.966 54.776 31.436 1.00 38.83 ATOM 203 CD1 ILE A 542 8.852 55.181 28.874 1.00 45.94 ATOM 204 N HIS A 543 7.747 55.939 34.229 1.00 42.88 ATOM 205 CA HIS A 543 7.637 55.394 35.561 1.00 44.25 ATOM 206 C HIS A 543 6.366 54.563 35.757 1.00 46.24 ATOM 207 O HIS A 543 6.388 53.516 36.412 1.00 46.93 ATOM 208 CB HIS A 543 7.639 56.542 36.546 1.00 46.04 ATOM 209 CG HIS A 543 8.440 56.275 37.764 1.00 50.35 ATOM 210 ND1 HIS A 543 9.396 57.156 38.229 1.00 53.51 ATOM 211 CD2 HIS A 543 8.444 55.216 38.616 1.00 55.70 ATOM 212 CE1 HIS A 543 9.952 56.652 39.324 1.00 56.92 ATOM 213 NE2 HIS A 543 9.393 55.475 39.580 1.00 57.87 ATOM 214 N HIS A 544 5.241 55.040 35.216 1.00 47.00 ATOM 215 CA HIS A 544 3.956 54.316 35.362 1.00 49.49 ATOM 216 C HIS A 544 3.946 52.894 34.723 1.00 49.05 ATOM 217 O HIS A 544 3.453 51.948 35.321 1.00 50.55 ATOM 218 CB HIS A 544 2.782 55.114 34.780 1.00 51.44 ATOM 219 CG HIS A 544 2.196 56.151 35.697 1.00 54.34 ATOM 220 ND1 HIS A 544 1.531 55.825 36.863 1.00 57.34 ATOM 221 CD2 HIS A 544 2.100 57.500 35.579 1.00 53.15 ATOM 222 CE1 HIS A 544 1.074 56.927 37.432 1.00 59.09 ATOM 223 NE2 HIS A 544 1.378 57.953 36.663 1.00 58.49 ATOM 224 ZN ZN A 702 1.183 59.988 36.332 1.00 44.38 TER