HEADER DNA BINDING PROTEIN/DNA 15-MAY-12 4F6N TITLE Crystal structure of Kaiso zinc finger DNA binding protein in complex TITLE 2 with methylated CpG site DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional regulator Kaiso; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: zinc finger DNA binding ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.80 ANGSTORMS DBREF 4F6N A 472 604 UNP Q86T24 KAISO_HUMAN 472 604 SEQRES 1 A 25 LYS LYS TYR PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO SEQRES 2 A 25 LEU ALA GLU TYR ARG THR LYS HIS GLU ILE HIS HIS ATOM 1 N LYS A 520 -0.903 -16.041 26.072 1.00 76.26 ATOM 2 CA LYS A 520 -0.698 -17.444 26.429 1.00 75.23 ATOM 3 C LYS A 520 -0.591 -18.330 25.191 1.00 73.44 ATOM 4 O LYS A 520 -1.218 -18.058 24.159 1.00 71.68 ATOM 5 CB LYS A 520 -1.792 -17.947 27.375 1.00 72.68 ATOM 6 CG LYS A 520 -1.565 -17.532 28.819 1.00 76.16 ATOM 7 CD LYS A 520 -2.849 -17.534 29.639 1.00 75.48 ATOM 8 CE LYS A 520 -2.606 -16.903 31.012 1.00 79.74 ATOM 9 NZ LYS A 520 -3.877 -16.636 31.746 1.00 78.95 ATOM 10 N LYS A 521 0.232 -19.371 25.305 1.00 74.16 ATOM 11 CA LYS A 521 0.406 -20.367 24.255 1.00 72.74 ATOM 12 C LYS A 521 -0.004 -21.751 24.763 1.00 70.37 ATOM 13 O LYS A 521 0.239 -22.101 25.922 1.00 71.47 ATOM 14 CB LYS A 521 1.860 -20.400 23.784 1.00 76.76 ATOM 15 CG LYS A 521 2.365 -19.094 23.200 1.00 79.41 ATOM 16 CD LYS A 521 1.961 -18.935 21.744 1.00 77.68 ATOM 17 CE LYS A 521 2.273 -17.526 21.242 1.00 80.25 ATOM 18 NZ LYS A 521 3.720 -17.271 21.042 1.00 84.43 ATOM 19 N TYR A 522 -0.633 -22.532 23.892 1.00 67.43 ATOM 20 CA TYR A 522 -1.001 -23.906 24.211 1.00 65.03 ATOM 21 C TYR A 522 -0.446 -24.812 23.124 1.00 65.41 ATOM 22 O TYR A 522 -1.144 -25.118 22.156 1.00 63.12 ATOM 23 CB TYR A 522 -2.522 -24.044 24.334 1.00 61.16 ATOM 24 CG TYR A 522 -3.123 -23.129 25.377 1.00 60.85 ATOM 25 CD1 TYR A 522 -3.157 -23.502 26.720 1.00 61.30 ATOM 26 CD2 TYR A 522 -3.642 -21.884 25.027 1.00 60.20 ATOM 27 CE1 TYR A 522 -3.700 -22.667 27.684 1.00 61.14 ATOM 28 CE2 TYR A 522 -4.181 -21.039 25.987 1.00 60.24 ATOM 29 CZ TYR A 522 -4.209 -21.442 27.310 1.00 61.02 ATOM 30 OH TYR A 522 -4.738 -20.618 28.269 1.00 62.29 ATOM 31 N PRO A 523 0.833 -25.215 23.264 1.00 68.70 ATOM 32 CA PRO A 523 1.466 -26.101 22.290 1.00 69.86 ATOM 33 C PRO A 523 0.965 -27.535 22.420 1.00 67.48 ATOM 34 O PRO A 523 0.727 -28.004 23.531 1.00 66.72 ATOM 35 CB PRO A 523 2.949 -26.036 22.670 1.00 74.63 ATOM 36 CG PRO A 523 2.950 -25.743 24.126 1.00 75.03 ATOM 37 CD PRO A 523 1.750 -24.863 24.367 1.00 71.95 ATOM 38 N CYS A 524 0.806 -28.216 21.289 1.00 66.70 ATOM 39 CA CYS A 524 0.505 -29.639 21.276 1.00 65.18 ATOM 40 C CYS A 524 1.708 -30.395 21.810 1.00 68.57 ATOM 41 O CYS A 524 2.843 -30.106 21.446 1.00 72.51 ATOM 42 CB CYS A 524 0.187 -30.101 19.857 1.00 64.26 ATOM 43 SG CYS A 524 -0.099 -31.850 19.701 1.00 63.58 ATOM 44 N ARG A 525 1.458 -31.359 22.681 1.00 67.80 ATOM 45 CA ARG A 525 2.531 -32.170 23.240 1.00 71.44 ATOM 46 C ARG A 525 2.921 -33.327 22.300 1.00 72.21 ATOM 47 O ARG A 525 3.764 -34.147 22.656 1.00 75.14 ATOM 48 CB ARG A 525 2.166 -32.685 24.653 1.00 70.85 ATOM 49 CG ARG A 525 2.130 -31.620 25.790 1.00 72.67 ATOM 50 CD ARG A 525 0.904 -30.669 25.670 1.00 71.41 ATOM 51 NE ARG A 525 0.406 -30.105 26.937 1.00 71.97 ATOM 52 CZ ARG A 525 -0.805 -30.344 27.455 1.00 69.22 ATOM 53 NH1 ARG A 525 -1.664 -31.143 26.829 1.00 65.67 ATOM 54 NH2 ARG A 525 -1.165 -29.780 28.607 1.00 69.39 ATOM 55 N TYR A 526 2.332 -33.374 21.101 1.00 70.14 ATOM 56 CA TYR A 526 2.614 -34.439 20.123 1.00 70.99 ATOM 57 C TYR A 526 3.164 -33.965 18.775 1.00 73.62 ATOM 58 O TYR A 526 3.823 -34.730 18.070 1.00 76.18 ATOM 59 CB TYR A 526 1.382 -35.305 19.884 1.00 66.85 ATOM 60 CG TYR A 526 0.848 -35.947 21.133 1.00 64.76 ATOM 61 CD1 TYR A 526 1.474 -37.050 21.695 1.00 66.86 ATOM 62 CD2 TYR A 526 -0.286 -35.447 21.755 1.00 61.85 ATOM 63 CE1 TYR A 526 0.983 -37.640 22.846 1.00 65.60 ATOM 64 CE2 TYR A 526 -0.788 -36.025 22.900 1.00 60.48 ATOM 65 CZ TYR A 526 -0.151 -37.117 23.439 1.00 62.78 ATOM 66 OH TYR A 526 -0.659 -37.690 24.575 1.00 62.78 ATOM 67 N CYS A 527 2.865 -32.724 18.409 1.00 73.27 ATOM 68 CA CYS A 527 3.495 -32.081 17.261 1.00 76.68 ATOM 69 C CYS A 527 3.830 -30.637 17.615 1.00 78.08 ATOM 70 O CYS A 527 3.340 -30.100 18.599 1.00 75.98 ATOM 71 CB CYS A 527 2.613 -32.175 16.006 1.00 74.73 ATOM 72 SG CYS A 527 0.958 -31.439 16.138 1.00 70.77 ATOM 73 N GLU A 528 4.696 -30.016 16.835 1.00 82.38 ATOM 74 CA GLU A 528 5.050 -28.629 17.079 1.00 84.47 ATOM 75 C GLU A 528 3.982 -27.746 16.453 1.00 81.53 ATOM 76 O GLU A 528 4.144 -27.257 15.337 1.00 84.05 ATOM 77 CB GLU A 528 6.438 -28.320 16.516 1.00 90.53 ATOM 78 CG GLU A 528 7.561 -28.652 17.477 1.00 95.03 ATOM 79 CD GLU A 528 8.876 -28.924 16.763 1.00102.99 ATOM 80 OE1 GLU A 528 8.923 -29.882 15.958 1.00104.36 ATOM 81 OE2 GLU A 528 9.866 -28.190 17.008 1.00107.80 ATOM 82 N LYS A 529 2.890 -27.550 17.181 1.00 76.74 ATOM 83 CA LYS A 529 1.704 -26.911 16.632 1.00 73.29 ATOM 84 C LYS A 529 0.938 -26.295 17.788 1.00 70.02 ATOM 85 O LYS A 529 0.574 -26.987 18.731 1.00 67.67 ATOM 86 CB LYS A 529 0.871 -27.962 15.911 1.00 70.70 ATOM 87 CG LYS A 529 -0.322 -27.459 15.133 1.00 68.45 ATOM 88 CD LYS A 529 -0.583 -28.435 13.993 1.00 68.84 ATOM 89 CE LYS A 529 -2.018 -28.404 13.498 1.00 65.80 ATOM 90 NZ LYS A 529 -2.279 -29.586 12.613 1.00 65.31 ATOM 91 N VAL A 530 0.714 -24.987 17.717 1.00 70.09 ATOM 92 CA VAL A 530 0.318 -24.211 18.895 1.00 68.42 ATOM 93 C VAL A 530 -1.095 -23.659 18.797 1.00 64.90 ATOM 94 O VAL A 530 -1.534 -23.224 17.731 1.00 64.98 ATOM 95 CB VAL A 530 1.287 -23.042 19.158 1.00 72.11 ATOM 96 CG1 VAL A 530 1.145 -22.565 20.595 1.00 71.40 ATOM 97 CG2 VAL A 530 2.735 -23.456 18.868 1.00 76.26 ATOM 98 N PHE A 531 -1.797 -23.666 19.924 1.00 62.22 ATOM 99 CA PHE A 531 -3.189 -23.233 19.960 1.00 58.94 ATOM 100 C PHE A 531 -3.391 -22.038 20.894 1.00 58.93 ATOM 101 O PHE A 531 -2.658 -21.886 21.875 1.00 60.53 ATOM 102 CB PHE A 531 -4.098 -24.404 20.346 1.00 55.74 ATOM 103 CG PHE A 531 -4.069 -25.537 19.358 1.00 55.42 ATOM 104 CD1 PHE A 531 -3.126 -26.557 19.470 1.00 56.52 ATOM 105 CD2 PHE A 531 -4.980 -25.584 18.305 1.00 54.19 ATOM 106 CE1 PHE A 531 -3.099 -27.604 18.552 1.00 56.00 ATOM 107 CE2 PHE A 531 -4.961 -26.633 17.378 1.00 53.35 ATOM 108 CZ PHE A 531 -4.024 -27.636 17.501 1.00 54.53 ATOM 109 N PRO A 532 -4.379 -21.181 20.582 1.00 57.30 ATOM 110 CA PRO A 532 -4.643 -20.005 21.401 1.00 57.52 ATOM 111 C PRO A 532 -5.608 -20.262 22.568 1.00 55.02 ATOM 112 O PRO A 532 -5.733 -19.409 23.445 1.00 55.77 ATOM 113 CB PRO A 532 -5.253 -19.030 20.400 1.00 57.56 ATOM 114 CG PRO A 532 -5.958 -19.904 19.417 1.00 55.74 ATOM 115 CD PRO A 532 -5.269 -21.238 19.405 1.00 55.87 ATOM 116 N LEU A 533 -6.270 -21.421 22.567 1.00 52.29 ATOM 117 CA LEU A 533 -7.245 -21.792 23.599 1.00 50.34 ATOM 118 C LEU A 533 -6.961 -23.189 24.108 1.00 49.75 ATOM 119 O LEU A 533 -6.829 -24.119 23.317 1.00 48.98 ATOM 120 CB LEU A 533 -8.681 -21.751 23.049 1.00 47.90 ATOM 121 CG LEU A 533 -9.550 -20.515 23.279 1.00 47.74 ATOM 122 CD1 LEU A 533 -9.008 -19.322 22.539 1.00 49.23 ATOM 123 CD2 LEU A 533 -10.984 -20.762 22.876 1.00 45.42 ATOM 124 N ALA A 534 -6.893 -23.347 25.427 1.00 50.56 ATOM 125 CA ALA A 534 -6.668 -24.665 26.019 1.00 50.30 ATOM 126 C ALA A 534 -7.526 -25.737 25.341 1.00 47.93 ATOM 127 O ALA A 534 -7.002 -26.735 24.845 1.00 48.10 ATOM 128 CB ALA A 534 -6.915 -24.639 27.514 1.00 50.88 ATOM 129 N GLU A 535 -8.834 -25.513 25.287 1.00 46.56 ATOM 130 CA GLU A 535 -9.767 -26.518 24.771 1.00 44.52 ATOM 131 C GLU A 535 -9.536 -26.855 23.296 1.00 44.01 ATOM 132 O GLU A 535 -9.820 -27.986 22.858 1.00 43.08 ATOM 133 CB GLU A 535 -11.211 -26.079 24.983 1.00 43.50 ATOM 134 CG GLU A 535 -11.652 -24.961 24.066 1.00 43.83 ATOM 135 CD GLU A 535 -13.135 -24.695 24.155 1.00 43.92 ATOM 136 OE1 GLU A 535 -13.606 -24.222 25.222 1.00 44.82 ATOM 137 OE2 GLU A 535 -13.824 -24.958 23.145 1.00 43.08 ATOM 138 N TYR A 536 -9.030 -25.886 22.535 1.00 44.83 ATOM 139 CA TYR A 536 -8.699 -26.139 21.142 1.00 44.78 ATOM 140 C TYR A 536 -7.569 -27.171 21.049 1.00 45.66 ATOM 141 O TYR A 536 -7.621 -28.085 20.221 1.00 45.21 ATOM 142 CB TYR A 536 -8.368 -24.843 20.393 1.00 46.19 ATOM 143 CG TYR A 536 -9.575 -23.947 20.115 1.00 45.68 ATOM 144 CD1 TYR A 536 -10.888 -24.398 20.337 1.00 43.78 ATOM 145 CD2 TYR A 536 -9.407 -22.660 19.604 1.00 46.54 ATOM 146 CE1 TYR A 536 -11.982 -23.590 20.081 1.00 42.16 ATOM 147 CE2 TYR A 536 -10.496 -21.849 19.342 1.00 45.71 ATOM 148 CZ TYR A 536 -11.778 -22.320 19.581 1.00 44.60 ATOM 149 OH TYR A 536 -12.869 -21.511 19.317 1.00 45.98 ATOM 150 N ARG A 537 -6.576 -27.036 21.923 1.00 47.19 ATOM 151 CA ARG A 537 -5.510 -28.021 22.038 1.00 48.50 ATOM 152 C ARG A 537 -6.029 -29.385 22.515 1.00 46.99 ATOM 153 O ARG A 537 -5.635 -30.430 21.976 1.00 47.15 ATOM 154 CB ARG A 537 -4.405 -27.518 22.968 1.00 50.97 ATOM 155 CG ARG A 537 -3.493 -28.613 23.471 1.00 52.42 ATOM 156 CD ARG A 537 -2.280 -28.057 24.141 1.00 56.21 ATOM 157 NE ARG A 537 -2.510 -27.733 25.542 1.00 57.11 ATOM 158 CZ ARG A 537 -1.583 -27.219 26.345 1.00 60.30 ATOM 159 NH1 ARG A 537 -0.364 -26.971 25.890 1.00 63.69 ATOM 160 NH2 ARG A 537 -1.875 -26.952 27.607 1.00 61.08 ATOM 161 N THR A 538 -6.905 -29.388 23.514 1.00 45.78 ATOM 162 CA THR A 538 -7.390 -30.658 24.048 1.00 44.90 ATOM 163 C THR A 538 -8.002 -31.542 22.955 1.00 43.52 ATOM 164 O THR A 538 -7.580 -32.685 22.783 1.00 43.59 ATOM 165 CB THR A 538 -8.336 -30.473 25.248 1.00 44.15 ATOM 166 OG1 THR A 538 -7.628 -29.809 26.294 1.00 45.63 ATOM 167 CG2 THR A 538 -8.814 -31.806 25.774 1.00 43.08 ATOM 168 N LYS A 539 -8.955 -31.013 22.192 1.00 42.83 ATOM 169 CA LYS A 539 -9.595 -31.838 21.152 1.00 42.32 ATOM 170 C LYS A 539 -8.618 -32.234 20.069 1.00 43.54 ATOM 171 O LYS A 539 -8.684 -33.344 19.536 1.00 43.74 ATOM 172 CB LYS A 539 -10.872 -31.221 20.561 1.00 41.25 ATOM 173 CG LYS A 539 -10.730 -29.830 20.015 1.00 43.74 ATOM 174 CD LYS A 539 -12.025 -29.338 19.392 1.00 44.80 ATOM 175 CE LYS A 539 -12.179 -29.831 17.941 1.00 47.54 ATOM 176 NZ LYS A 539 -13.012 -28.890 17.090 1.00 49.34 ATOM 177 N HIS A 540 -7.692 -31.343 19.767 1.00 45.13 ATOM 178 CA HIS A 540 -6.609 -31.707 18.886 1.00 47.27 ATOM 179 C HIS A 540 -5.823 -32.889 19.452 1.00 47.99 ATOM 180 O HIS A 540 -5.438 -33.793 18.704 1.00 48.98 ATOM 181 CB HIS A 540 -5.677 -30.524 18.676 1.00 49.71 ATOM 182 CG HIS A 540 -4.463 -30.851 17.873 1.00 53.65 ATOM 183 ND1 HIS A 540 -4.491 -30.957 16.500 1.00 56.10 ATOM 184 CD2 HIS A 540 -3.182 -31.089 18.245 1.00 56.92 ATOM 185 CE1 HIS A 540 -3.278 -31.244 16.059 1.00 59.44 ATOM 186 NE2 HIS A 540 -2.463 -31.315 17.097 1.00 61.81 ATOM 187 N GLU A 541 -5.586 -32.882 20.765 1.00 47.83 ATOM 188 CA GLU A 541 -4.718 -33.883 21.381 1.00 48.91 ATOM 189 C GLU A 541 -5.380 -35.243 21.542 1.00 47.35 ATOM 190 O GLU A 541 -4.730 -36.270 21.344 1.00 48.38 ATOM 191 CB GLU A 541 -4.162 -33.391 22.711 1.00 50.24 ATOM 192 CG GLU A 541 -2.978 -32.460 22.568 1.00 53.20 ATOM 193 CD GLU A 541 -2.256 -32.216 23.877 1.00 56.19 ATOM 194 OE1 GLU A 541 -2.840 -32.499 24.944 1.00 55.54 ATOM 195 OE2 GLU A 541 -1.097 -31.742 23.846 1.00 59.50 ATOM 196 N ILE A 542 -6.666 -35.253 21.901 1.00 45.20 ATOM 197 CA ILE A 542 -7.441 -36.497 21.964 1.00 43.85 ATOM 198 C ILE A 542 -7.466 -37.107 20.573 1.00 43.91 ATOM 199 O ILE A 542 -7.481 -38.326 20.409 1.00 43.91 ATOM 200 CB ILE A 542 -8.878 -36.262 22.474 1.00 41.82 ATOM 201 CG1 ILE A 542 -8.904 -36.285 24.002 1.00 42.69 ATOM 202 CG2 ILE A 542 -9.844 -37.321 21.942 1.00 39.79 ATOM 203 CD1 ILE A 542 -10.012 -35.387 24.609 1.00 42.63 ATOM 204 N HIS A 543 -7.439 -36.241 19.570 1.00 44.40 ATOM 205 CA HIS A 543 -7.398 -36.702 18.207 1.00 45.14 ATOM 206 C HIS A 543 -6.144 -37.520 17.884 1.00 47.18 ATOM 207 O HIS A 543 -6.268 -38.578 17.278 1.00 47.47 ATOM 208 CB HIS A 543 -7.591 -35.557 17.225 1.00 45.92 ATOM 209 CG HIS A 543 -7.928 -36.027 15.854 1.00 47.80 ATOM 210 ND1 HIS A 543 -9.220 -36.321 15.475 1.00 47.41 ATOM 211 CD2 HIS A 543 -7.139 -36.322 14.790 1.00 51.68 ATOM 212 CE1 HIS A 543 -9.216 -36.761 14.225 1.00 50.21 ATOM 213 NE2 HIS A 543 -7.966 -36.768 13.785 1.00 52.63 ATOM 214 N HIS A 544 -4.962 -37.040 18.288 1.00 48.98 ATOM 215 CA HIS A 544 -3.695 -37.797 18.172 1.00 51.58 ATOM 216 C HIS A 544 -3.801 -39.168 18.827 1.00 50.64 ATOM 217 O HIS A 544 -3.274 -40.155 18.344 1.00 52.24 ATOM 218 CB HIS A 544 -2.568 -37.078 18.913 1.00 54.17 ATOM 219 CG HIS A 544 -1.817 -36.073 18.098 1.00 57.85 ATOM 220 ND1 HIS A 544 -0.930 -36.432 17.106 1.00 62.30 ATOM 221 CD2 HIS A 544 -1.767 -34.721 18.175 1.00 58.68 ATOM 222 CE1 HIS A 544 -0.392 -35.343 16.586 1.00 64.83 ATOM 223 NE2 HIS A 544 -0.877 -34.292 17.222 1.00 64.22 TER