HEADER IMMUNE SYSTEM 19-JUL-12 4G6F TITLE Crystal Structure of 10E8 Fab in Complex with an HIV-1 gp41 Peptide COMPND MOL_ID: 3; COMPND 2 MOLECULE: gp41 MPER Peptide; COMPND 3 CHAIN: P, F; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.10 ANGSTORMS DBREF 4G6F F 653 686 PDB 4G6F 4G6F 653 686 SEQRES 1 F 27 GLU LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN SEQRES 2 F 27 TRP PHE ASP ILE THR ASN TRP LEU TRP TYR ILE ARG ARG SEQRES 3 F 27 ARG ATOM 1 N GLU F 659 17.021 36.499 111.666 1.00125.10 ATOM 2 CA GLU F 659 18.149 35.572 111.663 1.00124.04 ATOM 3 C GLU F 659 17.762 34.203 111.114 1.00117.13 ATOM 4 O GLU F 659 18.621 33.341 110.922 1.00110.36 ATOM 5 CB GLU F 659 18.732 35.418 113.069 1.00128.07 ATOM 6 CG GLU F 659 19.480 36.639 113.577 1.00134.28 ATOM 7 CD GLU F 659 20.132 36.401 114.926 1.00139.08 ATOM 8 OE1 GLU F 659 19.855 35.353 115.549 1.00142.47 ATOM 9 OE2 GLU F 659 20.926 37.261 115.364 1.00139.84 ATOM 10 N LEU F 660 16.469 34.007 110.868 1.00119.73 ATOM 11 CA LEU F 660 15.975 32.751 110.309 1.00121.59 ATOM 12 C LEU F 660 16.610 32.519 108.944 1.00127.04 ATOM 13 O LEU F 660 16.599 31.405 108.418 1.00128.83 ATOM 14 CB LEU F 660 14.446 32.774 110.203 1.00119.69 ATOM 15 CG LEU F 660 13.712 31.490 109.797 1.00118.53 ATOM 16 CD1 LEU F 660 13.545 31.386 108.283 1.00121.54 ATOM 17 CD2 LEU F 660 14.423 30.261 110.351 1.00114.32 ATOM 18 N LEU F 661 17.172 33.586 108.386 1.00128.24 ATOM 19 CA LEU F 661 17.878 33.532 107.112 1.00126.93 ATOM 20 C LEU F 661 19.020 32.511 107.146 1.00121.68 ATOM 21 O LEU F 661 19.090 31.613 106.308 1.00116.51 ATOM 22 CB LEU F 661 18.418 34.921 106.750 1.00129.09 ATOM 23 CG LEU F 661 17.420 36.082 106.621 1.00127.33 ATOM 24 CD1 LEU F 661 16.803 36.474 107.964 1.00118.99 ATOM 25 CD2 LEU F 661 18.089 37.285 105.969 1.00130.54 ATOM 26 N GLU F 662 19.912 32.652 108.121 1.00120.40 ATOM 27 CA GLU F 662 21.043 31.738 108.259 1.00116.87 ATOM 28 C GLU F 662 20.629 30.370 108.795 1.00113.73 ATOM 29 O GLU F 662 21.319 29.375 108.570 1.00110.15 ATOM 30 CB GLU F 662 22.116 32.346 109.164 1.00115.41 ATOM 31 CG GLU F 662 22.907 33.466 108.519 1.00120.64 ATOM 32 CD GLU F 662 23.753 32.981 107.357 1.00127.28 ATOM 33 OE1 GLU F 662 23.258 33.000 106.209 1.00129.69 ATOM 34 OE2 GLU F 662 24.913 32.579 107.593 1.00129.61 ATOM 35 N LEU F 663 19.504 30.325 109.505 1.00113.25 ATOM 36 CA LEU F 663 19.038 29.090 110.129 1.00107.66 ATOM 37 C LEU F 663 18.515 28.090 109.096 1.00104.15 ATOM 38 O LEU F 663 18.577 26.879 109.312 1.00101.26 ATOM 39 CB LEU F 663 17.964 29.387 111.175 1.00103.33 ATOM 40 CG LEU F 663 17.993 28.488 112.408 1.00100.44 ATOM 41 CD1 LEU F 663 19.354 28.572 113.081 1.00 98.84 ATOM 42 CD2 LEU F 663 16.888 28.881 113.373 1.00101.84 ATOM 43 N ASP F 664 17.998 28.602 107.981 1.00105.29 ATOM 44 CA ASP F 664 17.579 27.755 106.865 1.00104.29 ATOM 45 C ASP F 664 18.793 27.155 106.164 1.00 97.62 ATOM 46 O ASP F 664 18.761 26.007 105.723 1.00100.38 ATOM 47 CB ASP F 664 16.736 28.543 105.857 1.00110.22 ATOM 48 CG ASP F 664 15.371 28.922 106.400 1.00118.34 ATOM 49 OD1 ASP F 664 14.965 28.369 107.446 1.00116.62 ATOM 50 OD2 ASP F 664 14.698 29.767 105.771 1.00122.95 ATOM 51 N LYS F 665 19.858 27.946 106.056 1.00 91.26 ATOM 52 CA LYS F 665 21.119 27.474 105.494 1.00 88.30 ATOM 53 C LYS F 665 21.569 26.195 106.190 1.00 92.78 ATOM 54 O LYS F 665 21.744 25.159 105.551 1.00 91.52 ATOM 55 CB LYS F 665 22.204 28.547 105.639 1.00 91.29 ATOM 56 CG LYS F 665 23.621 28.022 105.444 1.00 93.00 ATOM 57 CD LYS F 665 24.662 29.057 105.838 1.00 94.36 ATOM 58 CE LYS F 665 24.656 30.236 104.882 1.00 98.55 ATOM 59 NZ LYS F 665 25.790 31.165 105.150 1.00101.81 ATOM 60 N TRP F 666 21.749 26.282 107.506 1.00 94.72 ATOM 61 CA TRP F 666 22.178 25.148 108.322 1.00 88.48 ATOM 62 C TRP F 666 21.216 23.966 108.247 1.00 85.29 ATOM 63 O TRP F 666 21.642 22.811 108.213 1.00 84.30 ATOM 64 CB TRP F 666 22.352 25.582 109.780 1.00 84.12 ATOM 65 CG TRP F 666 23.459 26.557 109.973 1.00 87.16 ATOM 66 CD1 TRP F 666 23.346 27.874 110.314 1.00 88.27 ATOM 67 CD2 TRP F 666 24.859 26.300 109.825 1.00 91.84 ATOM 68 NE1 TRP F 666 24.590 28.449 110.394 1.00 90.73 ATOM 69 CE2 TRP F 666 25.536 27.503 110.096 1.00 86.45 ATOM 70 CE3 TRP F 666 25.606 25.166 109.490 1.00 93.38 ATOM 71 CZ2 TRP F 666 26.924 27.606 110.043 1.00 89.72 ATOM 72 CZ3 TRP F 666 26.983 25.270 109.440 1.00 94.13 ATOM 73 CH2 TRP F 666 27.627 26.480 109.715 1.00 89.12 ATOM 74 N ALA F 667 19.919 24.259 108.232 1.00 83.32 ATOM 75 CA ALA F 667 18.897 23.219 108.168 1.00 84.28 ATOM 76 C ALA F 667 19.064 22.367 106.917 1.00 86.31 ATOM 77 O ALA F 667 18.699 21.191 106.902 1.00 86.65 ATOM 78 CB ALA F 667 17.508 23.834 108.206 1.00 83.10 ATOM 79 N SER F 668 19.620 22.966 105.870 1.00 89.49 ATOM 80 CA SER F 668 19.812 22.267 104.604 1.00 93.76 ATOM 81 C SER F 668 20.922 21.223 104.710 1.00 93.02 ATOM 82 O SER F 668 21.049 20.346 103.852 1.00 95.35 ATOM 83 CB SER F 668 20.123 23.261 103.480 1.00 96.83 ATOM 84 OG SER F 668 21.436 23.786 103.598 1.00 98.22 ATOM 85 N LEU F 669 21.725 21.319 105.764 1.00 90.06 ATOM 86 CA LEU F 669 22.807 20.366 105.977 1.00 85.18 ATOM 87 C LEU F 669 22.371 19.214 106.877 1.00 85.83 ATOM 88 O LEU F 669 23.206 18.451 107.374 1.00 87.32 ATOM 89 CB LEU F 669 24.038 21.067 106.545 1.00 86.18 ATOM 90 CG LEU F 669 24.507 22.232 105.677 1.00 86.13 ATOM 91 CD1 LEU F 669 25.822 22.804 106.204 1.00 87.51 ATOM 92 CD2 LEU F 669 24.641 21.790 104.226 1.00 86.04 ATOM 93 N TRP F 670 21.057 19.096 107.073 1.00 85.18 ATOM 94 CA TRP F 670 20.477 17.987 107.821 1.00 86.16 ATOM 95 C TRP F 670 20.372 16.777 106.911 1.00 86.36 ATOM 96 O TRP F 670 19.936 16.881 105.767 1.00 89.83 ATOM 97 CB TRP F 670 19.086 18.351 108.344 1.00 89.83 ATOM 98 CG TRP F 670 18.962 18.468 109.850 1.00 93.60 ATOM 99 CD1 TRP F 670 18.750 19.612 110.568 1.00 96.24 ATOM 100 CD2 TRP F 670 19.018 17.399 110.812 1.00 90.91 ATOM 101 NE1 TRP F 670 18.678 19.322 111.911 1.00 95.05 ATOM 102 CE2 TRP F 670 18.838 17.973 112.087 1.00 92.76 ATOM 103 CE3 TRP F 670 19.206 16.015 110.717 1.00 90.49 ATOM 104 CZ2 TRP F 670 18.844 17.212 113.257 1.00 92.36 ATOM 105 CZ3 TRP F 670 19.211 15.264 111.878 1.00 93.02 ATOM 106 CH2 TRP F 670 19.031 15.863 113.130 1.00 93.52 ATOM 107 N ASN F 671 20.789 15.630 107.425 1.00123.53 ATOM 108 CA ASN F 671 20.722 14.382 106.689 1.00 43.48 ATOM 109 C ASN F 671 19.286 13.854 106.679 1.00 45.41 ATOM 110 O ASN F 671 18.701 13.616 107.736 1.00 44.30 ATOM 111 CB ASN F 671 21.670 13.367 107.332 1.00 44.57 ATOM 112 CG ASN F 671 21.796 12.091 106.526 1.00 47.49 ATOM 113 OD1 ASN F 671 20.813 11.564 106.021 1.00 53.83 ATOM 114 ND2 ASN F 671 23.015 11.590 106.401 1.00 43.95 ATOM 115 N TRP F 672 18.708 13.686 105.490 1.00 52.20 ATOM 116 CA TRP F 672 17.325 13.209 105.389 1.00 42.83 ATOM 117 C TRP F 672 17.117 11.899 106.142 1.00 40.50 ATOM 118 O TRP F 672 16.067 11.673 106.734 1.00 43.21 ATOM 119 CB TRP F 672 16.907 13.014 103.927 1.00 39.11 ATOM 120 CG TRP F 672 15.540 12.332 103.774 1.00 39.14 ATOM 121 CD1 TRP F 672 15.304 11.008 103.506 1.00 38.10 ATOM 122 CD2 TRP F 672 14.247 12.952 103.871 1.00 42.71 ATOM 123 NE1 TRP F 672 13.952 10.767 103.432 1.00 37.99 ATOM 124 CE2 TRP F 672 13.279 11.941 103.650 1.00 42.57 ATOM 125 CE3 TRP F 672 13.812 14.260 104.124 1.00 49.16 ATOM 126 CZ2 TRP F 672 11.909 12.197 103.680 1.00 38.46 ATOM 127 CZ3 TRP F 672 12.443 14.515 104.153 1.00 46.17 ATOM 128 CH2 TRP F 672 11.510 13.487 103.929 1.00 53.14 ATOM 129 N PHE F 673 18.119 11.029 106.099 1.00 41.76 ATOM 130 CA PHE F 673 18.005 9.714 106.713 1.00 40.32 ATOM 131 C PHE F 673 18.003 9.856 108.231 1.00 41.04 ATOM 132 O PHE F 673 17.230 9.203 108.918 1.00 39.08 ATOM 133 CB PHE F 673 19.117 8.782 106.215 1.00 40.36 ATOM 134 CG PHE F 673 19.136 8.622 104.713 1.00 40.61 ATOM 135 CD1 PHE F 673 18.177 7.851 104.074 1.00 41.17 ATOM 136 CD2 PHE F 673 20.102 9.258 103.941 1.00 44.04 ATOM 137 CE1 PHE F 673 18.176 7.715 102.689 1.00 39.03 ATOM 138 CE2 PHE F 673 20.113 9.126 102.567 1.00 44.74 ATOM 139 CZ PHE F 673 19.143 8.350 101.935 1.00 43.16 ATOM 140 N ASP F 674 18.852 10.737 108.744 1.00 40.93 ATOM 141 CA ASP F 674 18.854 11.057 110.168 1.00 44.87 ATOM 142 C ASP F 674 17.539 11.697 110.629 1.00 52.32 ATOM 143 O ASP F 674 17.001 11.335 111.678 1.00 50.26 ATOM 144 CB ASP F 674 20.041 11.957 110.518 1.00 46.64 ATOM 145 CG ASP F 674 21.364 11.207 110.513 1.00 51.93 ATOM 146 OD1 ASP F 674 21.336 9.959 110.498 1.00 56.26 ATOM 147 OD2 ASP F 674 22.425 11.863 110.544 1.00 59.67 ATOM 148 N ILE F 675 17.026 12.634 109.835 1.00 59.25 ATOM 149 CA ILE F 675 15.785 13.343 110.144 1.00 57.80 ATOM 150 C ILE F 675 14.618 12.382 110.352 1.00 49.27 ATOM 151 O ILE F 675 13.931 12.417 111.377 1.00 48.18 ATOM 152 CB ILE F 675 15.383 14.292 108.996 1.00 68.24 ATOM 153 CG1 ILE F 675 16.365 15.449 108.871 1.00 82.42 ATOM 154 CG2 ILE F 675 14.005 14.869 109.255 1.00 70.17 ATOM 155 CD1 ILE F 675 16.087 16.561 109.854 1.00 92.90 ATOM 156 N THR F 676 14.382 11.542 109.353 1.00 40.34 ATOM 157 CA THR F 676 13.264 10.611 109.393 1.00 37.58 ATOM 158 C THR F 676 13.453 9.617 110.537 1.00 45.12 ATOM 159 O THR F 676 12.501 9.290 111.239 1.00 46.58 ATOM 160 CB THR F 676 13.075 9.870 108.044 1.00 45.36 ATOM 161 OG1 THR F 676 14.288 9.187 107.690 1.00 48.89 ATOM 162 CG2 THR F 676 12.728 10.865 106.933 1.00 40.06 ATOM 163 N ASN F 677 14.682 9.147 110.727 1.00 44.10 ATOM 164 CA ASN F 677 14.966 8.272 111.850 1.00 46.07 ATOM 165 C ASN F 677 14.563 8.945 113.158 1.00 48.71 ATOM 166 O ASN F 677 13.950 8.316 114.021 1.00 54.02 ATOM 167 CB ASN F 677 16.445 7.906 111.886 1.00 50.16 ATOM 168 CG ASN F 677 16.776 6.714 111.008 1.00 47.95 ATOM 169 OD1 ASN F 677 15.900 5.923 110.639 1.00 46.87 ATOM 170 ND2 ASN F 677 18.060 6.559 110.699 1.00 49.94 ATOM 171 N TRP F 678 14.889 10.229 113.295 1.00 44.11 ATOM 172 CA TRP F 678 14.511 10.983 114.495 1.00 42.47 ATOM 173 C TRP F 678 13.015 11.274 114.619 1.00 45.75 ATOM 174 O TRP F 678 12.462 11.154 115.711 1.00 46.17 ATOM 175 CB TRP F 678 15.308 12.280 114.622 1.00 45.32 ATOM 176 CG TRP F 678 16.480 12.129 115.520 1.00 46.14 ATOM 177 CD1 TRP F 678 17.784 12.015 115.151 1.00 46.07 ATOM 178 CD2 TRP F 678 16.454 12.040 116.949 1.00 51.70 ATOM 179 NE1 TRP F 678 18.577 11.870 116.262 1.00 47.31 ATOM 180 CE2 TRP F 678 17.784 11.887 117.380 1.00 50.28 ATOM 181 CE3 TRP F 678 15.430 12.090 117.906 1.00 46.51 ATOM 182 CZ2 TRP F 678 18.126 11.780 118.732 1.00 57.10 ATOM 183 CZ3 TRP F 678 15.773 11.986 119.254 1.00 58.77 ATOM 184 CH2 TRP F 678 17.109 11.829 119.650 1.00 55.96 ATOM 185 N LEU F 679 12.363 11.666 113.522 1.00 46.03 ATOM 186 CA LEU F 679 10.909 11.898 113.561 1.00 52.40 ATOM 187 C LEU F 679 10.174 10.633 113.961 1.00 45.81 ATOM 188 O LEU F 679 9.272 10.666 114.793 1.00 47.23 ATOM 189 CB LEU F 679 10.371 12.390 112.218 1.00 47.54 ATOM 190 CG LEU F 679 10.776 13.814 111.833 1.00 51.15 ATOM 191 CD1 LEU F 679 10.164 14.206 110.483 1.00 48.62 ATOM 192 CD2 LEU F 679 10.361 14.795 112.936 1.00 50.30 ATOM 193 N TRP F 680 10.568 9.521 113.354 1.00 41.68 ATOM 194 CA TRP F 680 10.025 8.221 113.710 1.00 51.97 ATOM 195 C TRP F 680 10.258 7.908 115.184 1.00 49.08 ATOM 196 O TRP F 680 9.358 7.433 115.876 1.00 55.58 ATOM 197 CB TRP F 680 10.648 7.120 112.843 1.00 41.59 ATOM 198 CG TRP F 680 9.984 5.787 113.051 1.00 55.88 ATOM 199 CD1 TRP F 680 8.798 5.374 112.519 1.00 62.82 ATOM 200 CD2 TRP F 680 10.460 4.701 113.855 1.00 60.22 ATOM 201 NE1 TRP F 680 8.508 4.098 112.936 1.00 63.41 ATOM 202 CE2 TRP F 680 9.513 3.660 113.755 1.00 60.64 ATOM 203 CE3 TRP F 680 11.598 4.505 114.646 1.00 58.73 ATOM 204 CZ2 TRP F 680 9.665 2.443 114.415 1.00 63.22 ATOM 205 CZ3 TRP F 680 11.750 3.297 115.298 1.00 59.26 ATOM 206 CH2 TRP F 680 10.787 2.279 115.179 1.00 64.57 ATOM 207 N TYR F 681 11.466 8.180 115.665 1.00 46.51 ATOM 208 CA TYR F 681 11.807 7.863 117.041 1.00 54.46 ATOM 209 C TYR F 681 10.913 8.612 118.030 1.00 61.80 ATOM 210 O TYR F 681 10.411 8.008 118.986 1.00 67.37 ATOM 211 CB TYR F 681 13.300 8.102 117.320 1.00 53.75 ATOM 212 CG TYR F 681 13.715 7.829 118.756 1.00 57.40 ATOM 213 CD1 TYR F 681 13.827 6.529 119.239 1.00 58.24 ATOM 214 CD2 TYR F 681 13.981 8.873 119.630 1.00 62.42 ATOM 215 CE1 TYR F 681 14.200 6.280 120.544 1.00 68.37 ATOM 216 CE2 TYR F 681 14.353 8.633 120.936 1.00 69.08 ATOM 217 CZ TYR F 681 14.460 7.335 121.392 1.00 73.26 ATOM 218 OH TYR F 681 14.829 7.100 122.699 1.00 80.58 ATOM 219 N ILE F 682 10.678 9.907 117.811 1.00 59.20 ATOM 220 CA ILE F 682 9.872 10.659 118.785 1.00 62.33 ATOM 221 C ILE F 682 8.384 10.308 118.779 1.00 64.17 ATOM 222 O ILE F 682 7.666 10.608 119.737 1.00 64.42 ATOM 223 CB ILE F 682 10.038 12.189 118.682 1.00 65.96 ATOM 224 CG1 ILE F 682 9.837 12.661 117.251 1.00 67.04 ATOM 225 CG2 ILE F 682 11.393 12.623 119.223 1.00 69.90 ATOM 226 CD1 ILE F 682 9.824 14.156 117.137 1.00 74.93 ATOM 227 N ARG F 683 7.922 9.677 117.706 1.00 62.59 ATOM 228 CA ARG F 683 6.552 9.192 117.659 1.00 64.29 ATOM 229 C ARG F 683 6.433 7.833 118.337 1.00 63.44 ATOM 230 O ARG F 683 5.501 7.588 119.095 1.00 66.11 ATOM 231 CB ARG F 683 6.064 9.078 116.213 1.00 64.89 ATOM 232 CG ARG F 683 4.611 8.621 116.103 1.00 72.74 ATOM 233 CD ARG F 683 4.211 8.319 114.667 1.00 80.42 ATOM 234 NE ARG F 683 4.379 6.909 114.319 1.00 81.61 ATOM 235 CZ ARG F 683 4.966 6.474 113.206 1.00 73.07 ATOM 236 NH1 ARG F 683 5.464 7.338 112.324 1.00 48.87 ATOM 237 NH2 ARG F 683 5.064 5.170 112.975 1.00 63.64 ATOM 238 N ARG F 684 7.390 6.959 118.049 1.00 70.35 ATOM 239 CA ARG F 684 7.340 5.558 118.448 1.00 77.39 ATOM 240 C ARG F 684 7.673 5.366 119.918 1.00 93.54 ATOM 241 O ARG F 684 7.140 4.476 120.577 1.00 88.47 ATOM 242 CB ARG F 684 8.319 4.757 117.593 1.00 71.79 ATOM 243 CG ARG F 684 8.361 3.270 117.885 1.00 82.78 ATOM 244 CD ARG F 684 7.043 2.598 117.541 1.00 92.71 ATOM 245 NE ARG F 684 7.228 1.195 117.181 1.00 96.88 ATOM 246 CZ ARG F 684 7.469 0.221 118.053 1.00101.33 ATOM 247 NH1 ARG F 684 7.563 0.492 119.349 1.00 97.96 ATOM 248 NH2 ARG F 684 7.622 -1.027 117.628 1.00106.16 ATOM 249 N ARG F 685 8.568 6.203 120.429 1.00 65.14 ATOM 250 CA ARG F 685 9.003 6.100 121.815 1.00 71.43 ATOM 251 C ARG F 685 8.043 6.833 122.747 1.00 74.06 ATOM 252 O ARG F 685 6.836 6.600 122.719 1.00133.50 ATOM 253 CB ARG F 685 10.417 6.660 121.973 1.00 67.76 ATOM 254 CG ARG F 685 11.166 6.119 123.178 1.00 73.66 ATOM 255 CD ARG F 685 11.482 4.643 123.004 1.00 84.58 ATOM 256 NE ARG F 685 12.234 4.104 124.132 1.00 92.03 ATOM 257 CZ ARG F 685 11.682 3.484 125.169 1.00 88.39 ATOM 258 NH1 ARG F 685 10.368 3.321 125.223 1.00 83.65 ATOM 259 NH2 ARG F 685 12.444 3.026 126.152 1.00 89.87 TER