HEADER PROTEIN BINDING/CYTOKINE 07-FEB-13 4J4L TITLE Modular evolution and design of the protein binding interface COMPND MOL_ID: 1; COMPND 2 MOLECULE: Internalin B, Variable lymphocyte receptor B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 CHIMERA OF RESIDUES 43-100 FROM INTERNALIN B, REPEAT MODULES, COMPND 6 OTHER_DETAILS: RESIDUES 141-232 FROM VARIABLE LYMPHOCYTE RECEPTOR B, AND 8 HIS TAGS; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 21 REMARK 465 LYS B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 THR B 25 REMARK 465 ASP B 26 DBREF 4J4L B 43 100 UNP D2P9A6 D2P9A6_LISM 43 100 DBREF 4J4L B 101 209 PDB 4J4L 4J4L 101 209 DBREF 4J4L B 210 301 UNP Q4G1L3 Q4G1L3_EPTB 141 232 SEQRES 1 B 35 PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA GLU SEQRES 2 B 35 THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR ASP SEQRES 3 B 35 ALA VAL THR GLN ASN GLU LEU ASN SER ATOM 1 N PRO B 43 30.763 -8.279 -48.425 1.00 60.12 ATOM 2 CA PRO B 43 30.430 -9.314 -47.439 1.00 62.09 ATOM 3 C PRO B 43 28.988 -9.869 -47.518 1.00 58.25 ATOM 4 O PRO B 43 28.176 -9.406 -48.336 1.00 50.53 ATOM 5 CB PRO B 43 30.680 -8.605 -46.096 1.00 63.01 ATOM 6 CG PRO B 43 31.766 -7.617 -46.398 1.00 63.11 ATOM 7 CD PRO B 43 31.690 -7.273 -47.872 1.00 59.92 ATOM 8 N ILE B 44 28.698 -10.860 -46.663 1.00 54.97 ATOM 9 CA ILE B 44 27.393 -11.503 -46.616 1.00 49.29 ATOM 10 C ILE B 44 26.303 -10.497 -46.408 1.00 44.96 ATOM 11 O ILE B 44 25.252 -10.594 -47.028 1.00 45.54 ATOM 12 CB ILE B 44 27.321 -12.618 -45.549 1.00 50.43 ATOM 13 CG1 ILE B 44 27.477 -13.994 -46.201 1.00 53.52 ATOM 14 CG2 ILE B 44 25.963 -12.667 -44.891 1.00 48.25 ATOM 15 CD1 ILE B 44 28.899 -14.369 -46.561 1.00 54.95 ATOM 16 N LYS B 45 26.564 -9.531 -45.533 1.00 50.27 ATOM 17 CA LYS B 45 25.672 -8.381 -45.349 1.00 51.93 ATOM 18 C LYS B 45 25.154 -7.830 -46.706 1.00 47.18 ATOM 19 O LYS B 45 23.961 -7.613 -46.858 1.00 42.40 ATOM 20 CB LYS B 45 26.281 -7.277 -44.408 1.00 57.54 ATOM 21 CG LYS B 45 27.814 -7.271 -44.109 1.00 66.91 ATOM 22 CD LYS B 45 28.300 -8.207 -42.961 1.00 67.18 ATOM 23 CE LYS B 45 29.557 -7.695 -42.218 1.00 62.46 ATOM 24 NZ LYS B 45 30.865 -8.367 -42.533 1.00 58.20 ATOM 25 N GLN B 46 26.044 -7.678 -47.698 1.00 44.18 ATOM 26 CA GLN B 46 25.686 -7.107 -49.014 1.00 42.04 ATOM 27 C GLN B 46 25.013 -8.096 -49.965 1.00 38.46 ATOM 28 O GLN B 46 23.996 -7.775 -50.598 1.00 37.54 ATOM 29 CB GLN B 46 26.928 -6.504 -49.701 1.00 41.90 ATOM 30 CG GLN B 46 27.342 -5.136 -49.171 1.00 43.48 ATOM 31 CD GLN B 46 27.931 -5.220 -47.782 1.00 45.53 ATOM 32 OE1 GLN B 46 29.114 -5.517 -47.621 1.00 46.93 ATOM 33 NE2 GLN B 46 27.101 -4.967 -46.758 1.00 43.21 ATOM 34 N ILE B 47 25.607 -9.292 -50.057 1.00 36.61 ATOM 35 CA ILE B 47 25.304 -10.279 -51.094 1.00 32.38 ATOM 36 C ILE B 47 23.945 -10.867 -50.854 1.00 32.52 ATOM 37 O ILE B 47 23.265 -11.186 -51.801 1.00 36.96 ATOM 38 CB ILE B 47 26.320 -11.428 -51.089 1.00 31.92 ATOM 39 CG1 ILE B 47 27.718 -10.908 -51.332 1.00 29.86 ATOM 40 CG2 ILE B 47 25.967 -12.496 -52.129 1.00 34.58 ATOM 41 CD1 ILE B 47 28.742 -12.002 -51.557 1.00 29.72 ATOM 42 N PHE B 48 23.549 -10.979 -49.588 1.00 31.90 ATOM 43 CA PHE B 48 22.257 -11.523 -49.205 1.00 34.06 ATOM 44 C PHE B 48 21.559 -10.471 -48.393 1.00 39.32 ATOM 45 O PHE B 48 21.695 -10.462 -47.175 1.00 46.52 ATOM 46 CB PHE B 48 22.426 -12.801 -48.364 1.00 31.25 ATOM 47 CG PHE B 48 23.282 -13.845 -49.027 1.00 28.75 ATOM 48 CD1 PHE B 48 24.656 -13.841 -48.855 1.00 26.73 ATOM 49 CD2 PHE B 48 22.718 -14.781 -49.864 1.00 27.56 ATOM 50 CE1 PHE B 48 25.450 -14.776 -49.494 1.00 28.62 ATOM 51 CE2 PHE B 48 23.507 -15.720 -50.529 1.00 28.31 ATOM 52 CZ PHE B 48 24.874 -15.724 -50.340 1.00 28.32 ATOM 53 N PRO B 49 20.805 -9.572 -49.050 1.00 44.87 ATOM 54 CA PRO B 49 20.159 -8.479 -48.308 1.00 45.64 ATOM 55 C PRO B 49 19.285 -8.969 -47.152 1.00 46.60 ATOM 56 O PRO B 49 19.335 -8.380 -46.082 1.00 44.51 ATOM 57 CB PRO B 49 19.289 -7.787 -49.373 1.00 47.94 ATOM 58 CG PRO B 49 19.082 -8.814 -50.447 1.00 46.91 ATOM 59 CD PRO B 49 20.401 -9.568 -50.470 1.00 47.56 ATOM 60 N ASP B 50 18.531 -10.053 -47.363 1.00 44.39 ATOM 61 CA ASP B 50 17.609 -10.571 -46.347 1.00 47.02 ATOM 62 C ASP B 50 18.318 -11.122 -45.130 1.00 46.17 ATOM 63 O ASP B 50 19.241 -11.922 -45.239 1.00 49.59 ATOM 64 CB ASP B 50 16.668 -11.631 -46.908 1.00 45.33 ATOM 65 CG ASP B 50 15.790 -12.253 -45.834 1.00 44.21 ATOM 66 OD1 ASP B 50 16.265 -12.498 -44.686 1.00 38.91 ATOM 67 OD2 ASP B 50 14.619 -12.495 -46.164 1.00 41.43 ATOM 68 N ASP B 51 17.834 -10.706 -43.970 1.00 47.65 ATOM 69 CA ASP B 51 18.625 -10.739 -42.760 1.00 53.62 ATOM 70 C ASP B 51 18.802 -12.156 -42.250 1.00 48.26 ATOM 71 O ASP B 51 19.928 -12.606 -41.979 1.00 47.39 ATOM 72 CB ASP B 51 18.005 -9.817 -41.693 1.00 64.63 ATOM 73 CG ASP B 51 19.043 -9.272 -40.717 1.00 73.20 ATOM 74 OD1 ASP B 51 19.807 -10.095 -40.159 1.00 73.99 ATOM 75 OD2 ASP B 51 19.094 -8.028 -40.508 1.00 73.45 ATOM 76 N ALA B 52 17.690 -12.863 -42.135 1.00 45.10 ATOM 77 CA ALA B 52 17.747 -14.254 -41.707 1.00 49.12 ATOM 78 C ALA B 52 18.614 -15.111 -42.644 1.00 48.19 ATOM 79 O ALA B 52 19.446 -15.895 -42.160 1.00 48.04 ATOM 80 CB ALA B 52 16.351 -14.823 -41.557 1.00 45.82 ATOM 81 N PHE B 53 18.447 -14.930 -43.966 1.00 45.39 ATOM 82 CA PHE B 53 19.173 -15.709 -44.981 1.00 41.49 ATOM 83 C PHE B 53 20.671 -15.489 -44.885 1.00 44.65 ATOM 84 O PHE B 53 21.464 -16.414 -45.119 1.00 46.97 ATOM 85 CB PHE B 53 18.645 -15.434 -46.405 1.00 43.43 ATOM 86 CG PHE B 53 19.217 -16.356 -47.481 1.00 41.89 ATOM 87 CD1 PHE B 53 19.374 -17.731 -47.256 1.00 42.59 ATOM 88 CD2 PHE B 53 19.556 -15.850 -48.739 1.00 41.52 ATOM 89 CE1 PHE B 53 19.891 -18.557 -48.252 1.00 42.97 ATOM 90 CE2 PHE B 53 20.068 -16.672 -49.741 1.00 40.03 ATOM 91 CZ PHE B 53 20.246 -18.024 -49.489 1.00 41.69 ATOM 92 N ALA B 54 21.065 -14.274 -44.517 1.00 45.90 ATOM 93 CA ALA B 54 22.483 -13.982 -44.240 1.00 46.70 ATOM 94 C ALA B 54 23.037 -14.821 -43.099 1.00 47.16 ATOM 95 O ALA B 54 24.175 -15.299 -43.188 1.00 49.81 ATOM 96 CB ALA B 54 22.676 -12.503 -43.945 1.00 48.73 ATOM 97 N GLU B 55 22.228 -15.000 -42.044 1.00 48.16 ATOM 98 CA GLU B 55 22.572 -15.838 -40.857 1.00 50.08 ATOM 99 C GLU B 55 22.889 -17.282 -41.223 1.00 47.16 ATOM 100 O GLU B 55 23.894 -17.841 -40.782 1.00 46.64 ATOM 101 CB GLU B 55 21.414 -15.879 -39.837 1.00 53.80 ATOM 102 CG GLU B 55 20.813 -14.529 -39.446 1.00 61.94 ATOM 103 CD GLU B 55 21.574 -13.838 -38.328 1.00 61.53 ATOM 104 OE1 GLU B 55 20.978 -12.928 -37.685 1.00 66.18 ATOM 105 OE2 GLU B 55 22.752 -14.212 -38.098 1.00 53.05 ATOM 106 N THR B 56 21.964 -17.869 -41.980 1.00 44.72 ATOM 107 CA THR B 56 22.069 -19.189 -42.581 1.00 41.30 ATOM 108 C THR B 56 23.325 -19.324 -43.423 1.00 41.88 ATOM 109 O THR B 56 24.051 -20.308 -43.307 1.00 39.55 ATOM 110 CB THR B 56 20.866 -19.403 -43.501 1.00 42.93 ATOM 111 OG1 THR B 56 19.676 -18.924 -42.843 1.00 44.48 ATOM 112 CG2 THR B 56 20.715 -20.881 -43.878 1.00 47.05 ATOM 113 N ILE B 57 23.587 -18.328 -44.273 1.00 40.18 ATOM 114 CA ILE B 57 24.797 -18.337 -45.073 1.00 36.94 ATOM 115 C ILE B 57 26.036 -18.167 -44.176 1.00 37.61 ATOM 116 O ILE B 57 27.059 -18.803 -44.440 1.00 39.41 ATOM 117 CB ILE B 57 24.721 -17.328 -46.261 1.00 35.45 ATOM 118 CG1 ILE B 57 23.656 -17.768 -47.279 1.00 34.24 ATOM 119 CG2 ILE B 57 26.067 -17.167 -46.953 1.00 33.94 ATOM 120 CD1 ILE B 57 23.699 -19.219 -47.691 1.00 32.10 ATOM 121 N LYS B 58 25.944 -17.359 -43.111 1.00 38.61 ATOM 122 CA LYS B 58 27.083 -17.203 -42.171 1.00 41.85 ATOM 123 C LYS B 58 27.465 -18.510 -41.487 1.00 41.21 ATOM 124 O LYS B 58 28.647 -18.838 -41.400 1.00 40.27 ATOM 125 CB LYS B 58 26.856 -16.133 -41.065 1.00 47.78 ATOM 126 CG LYS B 58 28.157 -15.847 -40.283 1.00 49.92 ATOM 127 CD LYS B 58 28.053 -15.514 -38.790 1.00 51.67 ATOM 128 CE LYS B 58 29.487 -15.369 -38.272 1.00 53.85 ATOM 129 NZ LYS B 58 29.690 -14.552 -37.038 1.00 54.06 ATOM 130 N ALA B 59 26.453 -19.209 -40.965 1.00 42.11 ATOM 131 CA ALA B 59 26.621 -20.519 -40.308 1.00 45.83 ATOM 132 C ALA B 59 27.087 -21.601 -41.287 1.00 45.43 ATOM 133 O ALA B 59 28.032 -22.319 -40.996 1.00 49.38 ATOM 134 CB ALA B 59 25.340 -20.942 -39.592 1.00 41.17 ATOM 135 N ASN B 60 26.449 -21.699 -42.453 1.00 45.37 ATOM 136 CA ASN B 60 26.923 -22.587 -43.519 1.00 46.08 ATOM 137 C ASN B 60 28.425 -22.434 -43.819 1.00 48.37 ATOM 138 O ASN B 60 29.103 -23.420 -44.096 1.00 52.52 ATOM 139 CB ASN B 60 26.099 -22.346 -44.784 1.00 46.18 ATOM 140 CG ASN B 60 25.894 -23.600 -45.616 1.00 48.10 ATOM 141 OD1 ASN B 60 24.773 -24.118 -45.700 1.00 48.68 ATOM 142 ND2 ASN B 60 26.958 -24.076 -46.261 1.00 44.97 ATOM 143 N LEU B 61 28.946 -21.207 -43.746 1.00 51.74 ATOM 144 CA LEU B 61 30.352 -20.938 -44.091 1.00 55.63 ATOM 145 C LEU B 61 31.298 -20.820 -42.889 1.00 58.08 ATOM 146 O LEU B 61 32.508 -21.022 -43.042 1.00 55.44 ATOM 147 CB LEU B 61 30.491 -19.658 -44.936 1.00 54.56 ATOM 148 CG LEU B 61 30.518 -19.533 -46.473 1.00 55.09 ATOM 149 CD1 LEU B 61 30.516 -20.865 -47.213 1.00 61.36 ATOM 150 CD2 LEU B 61 29.374 -18.656 -46.950 1.00 55.22 ATOM 151 N LYS B 62 30.745 -20.455 -41.724 1.00 59.86 ATOM 152 CA LYS B 62 31.480 -20.196 -40.431 1.00 64.32 ATOM 153 C LYS B 62 31.572 -18.721 -40.044 1.00 63.42 ATOM 154 O LYS B 62 32.588 -18.063 -40.266 1.00 67.53 ATOM 155 CB LYS B 62 32.866 -20.885 -40.309 1.00 61.94 ATOM 156 CG LYS B 62 32.864 -22.423 -40.297 1.00 63.10 ATOM 157 CD LYS B 62 31.701 -23.061 -39.527 1.00 59.28 ATOM 158 CE LYS B 62 31.088 -24.204 -40.340 1.00 61.77 ATOM 159 NZ LYS B 62 30.367 -25.258 -39.560 1.00 62.38 ATOM 160 N ALA B 69 34.689 -10.029 -45.331 1.00 48.69 ATOM 161 CA ALA B 69 34.664 -10.076 -46.790 1.00 48.85 ATOM 162 C ALA B 69 34.736 -11.515 -47.299 1.00 49.70 ATOM 163 O ALA B 69 35.454 -12.338 -46.740 1.00 48.35 ATOM 164 CB ALA B 69 35.792 -9.234 -47.385 1.00 50.39 ATOM 165 N VAL B 70 33.989 -11.796 -48.371 1.00 51.38 ATOM 166 CA VAL B 70 33.768 -13.153 -48.912 1.00 46.97 ATOM 167 C VAL B 70 34.437 -13.411 -50.275 1.00 47.40 ATOM 168 O VAL B 70 34.330 -12.596 -51.199 1.00 43.73 ATOM 169 CB VAL B 70 32.252 -13.473 -49.003 1.00 49.67 ATOM 170 CG1 VAL B 70 31.479 -12.277 -49.511 1.00 49.61 ATOM 171 CG2 VAL B 70 31.983 -14.694 -49.878 1.00 50.53 ATOM 172 N THR B 71 35.125 -14.549 -50.393 1.00 48.66 ATOM 173 CA THR B 71 35.819 -14.894 -51.629 1.00 48.13 ATOM 174 C THR B 71 34.986 -15.769 -52.539 1.00 47.20 ATOM 175 O THR B 71 34.033 -16.433 -52.098 1.00 51.14 ATOM 176 CB THR B 71 37.188 -15.579 -51.405 1.00 48.98 ATOM 177 OG1 THR B 71 37.609 -16.173 -52.641 1.00 53.80 ATOM 178 CG2 THR B 71 37.082 -16.685 -50.410 1.00 51.43 ATOM 179 N GLN B 72 35.383 -15.773 -53.809 1.00 42.14 ATOM 180 CA GLN B 72 34.803 -16.630 -54.839 1.00 42.91 ATOM 181 C GLN B 72 34.824 -18.120 -54.462 1.00 46.37 ATOM 182 O GLN B 72 33.790 -18.766 -54.549 1.00 47.47 ATOM 183 CB GLN B 72 35.491 -16.384 -56.190 1.00 38.44 ATOM 184 CG GLN B 72 34.774 -16.950 -57.410 1.00 38.50 ATOM 185 CD GLN B 72 33.283 -16.643 -57.485 1.00 36.59 ATOM 186 OE1 GLN B 72 32.506 -17.502 -57.861 1.00 39.68 ATOM 187 NE2 GLN B 72 32.880 -15.439 -57.123 1.00 36.79 ATOM 188 N ASN B 73 35.991 -18.655 -54.075 1.00 47.70 ATOM 189 CA ASN B 73 36.078 -19.992 -53.465 1.00 48.27 ATOM 190 C ASN B 73 35.049 -20.206 -52.335 1.00 46.15 ATOM 191 O ASN B 73 34.338 -21.209 -52.350 1.00 45.98 ATOM 192 CB ASN B 73 37.486 -20.266 -52.911 1.00 51.96 ATOM 193 CG ASN B 73 38.533 -20.445 -53.993 1.00 56.17 ATOM 194 OD1 ASN B 73 38.227 -20.879 -55.112 1.00 61.69 ATOM 195 ND2 ASN B 73 39.788 -20.135 -53.657 1.00 49.07 ATOM 196 N GLU B 74 34.966 -19.286 -51.368 1.00 42.98 ATOM 197 CA GLU B 74 33.956 -19.401 -50.309 1.00 43.93 ATOM 198 C GLU B 74 32.595 -19.571 -50.918 1.00 44.53 ATOM 199 O GLU B 74 31.839 -20.457 -50.520 1.00 46.62 ATOM 200 CB GLU B 74 33.922 -18.170 -49.416 1.00 47.20 ATOM 201 CG GLU B 74 34.568 -18.367 -48.061 1.00 52.29 ATOM 202 CD GLU B 74 35.494 -17.212 -47.676 1.00 55.26 ATOM 203 OE1 GLU B 74 36.610 -17.472 -47.144 1.00 49.32 ATOM 204 OE2 GLU B 74 35.122 -16.043 -47.938 1.00 56.36 ATOM 205 N LEU B 75 32.290 -18.713 -51.893 1.00 43.01 ATOM 206 CA LEU B 75 31.026 -18.738 -52.610 1.00 38.69 ATOM 207 C LEU B 75 30.764 -20.063 -53.332 1.00 38.83 ATOM 208 O LEU B 75 29.616 -20.474 -53.495 1.00 39.60 ATOM 209 CB LEU B 75 31.008 -17.587 -53.603 1.00 40.54 ATOM 210 CG LEU B 75 30.137 -16.340 -53.432 1.00 38.52 ATOM 211 CD1 LEU B 75 29.895 -15.937 -51.993 1.00 36.03 ATOM 212 CD2 LEU B 75 30.752 -15.209 -54.249 1.00 35.92 ATOM 213 N ASN B 76 31.826 -20.736 -53.749 1.00 37.84 ATOM 214 CA ASN B 76 31.724 -22.035 -54.438 1.00 39.82 ATOM 215 C ASN B 76 31.634 -23.246 -53.494 1.00 38.87 ATOM 216 O ASN B 76 31.279 -24.346 -53.931 1.00 35.58 ATOM 217 CB ASN B 76 32.892 -22.202 -55.418 1.00 38.45 ATOM 218 CG ASN B 76 32.953 -21.079 -56.458 1.00 42.82 ATOM 219 OD1 ASN B 76 31.962 -20.388 -56.678 1.00 45.95 ATOM 220 ND2 ASN B 76 34.120 -20.897 -57.102 1.00 38.86 ATOM 221 N SER B 77 31.954 -23.006 -52.214 1.00 41.17 ATOM 222 CA SER B 77 31.880 -23.981 -51.090 1.00 42.75 ATOM 223 C SER B 77 30.514 -24.622 -50.858 1.00 42.26 ATOM 224 O SER B 77 30.414 -25.759 -50.387 1.00 45.04 ATOM 225 CB SER B 77 32.224 -23.293 -49.765 1.00 44.50 ATOM 226 OG SER B 77 33.619 -23.095 -49.619 1.00 54.43 TER