HEADER ISOMERASE/DNA/INHIBITOR 31-DEC-69 4KOE TITLE Quinolone(Trovafloxacin)-DNA cleavage complex of type IV TITLE 2 topoisomerase from S. pneumoniae COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 MUTATION: YES; COMPND 5 EC: 5.99.1.3; COMPND 6 FRAGMENT: ParE30, UNP residues ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.02 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 166 REMARK 465 SER D 167 REMARK 465 LYS D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 LYS D 172 REMARK 465 LYS D 173 REMARK 465 GLU D 174 REMARK 465 GLU D 175 REMARK 465 VAL D 176 REMARK 465 ALA D 177 REMARK 465 PHE D 192 REMARK 465 GLY D 193 REMARK 465 LYS D 194 REMARK 465 GLY D 195 REMARK 465 ALA D 196 REMARK 465 THR D 197 REMARK 465 LEU D 198 DBREF 4KOE D 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 C 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 C 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 C 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 C 42 TYR LYS GLY ATOM 1 N PRO C 541 -54.912 7.758 22.356 1.00103.55 ATOM 2 CA PRO C 541 -54.595 9.138 22.741 1.00108.15 ATOM 3 C PRO C 541 -55.768 9.790 23.463 1.00110.04 ATOM 4 O PRO C 541 -56.906 9.364 23.254 1.00106.77 ATOM 5 CB PRO C 541 -54.367 9.826 21.391 1.00106.09 ATOM 6 CG PRO C 541 -55.203 9.054 20.436 1.00 99.04 ATOM 7 CD PRO C 541 -55.137 7.621 20.907 1.00 93.36 ATOM 8 N LEU C 542 -55.493 10.799 24.290 1.00112.09 ATOM 9 CA LEU C 542 -56.542 11.560 24.973 1.00107.70 ATOM 10 C LEU C 542 -56.886 12.869 24.247 1.00104.99 ATOM 11 O LEU C 542 -58.023 13.337 24.317 1.00105.24 ATOM 12 CB LEU C 542 -56.153 11.855 26.431 1.00118.84 ATOM 13 CG LEU C 542 -56.135 10.734 27.482 1.00 81.45 ATOM 14 N TYR C 543 -55.910 13.454 23.549 1.00109.33 ATOM 15 CA TYR C 543 -56.103 14.757 22.897 1.00114.77 ATOM 16 C TYR C 543 -55.469 14.871 21.503 1.00113.49 ATOM 17 O TYR C 543 -54.525 14.151 21.181 1.00116.07 ATOM 18 CB TYR C 543 -55.541 15.872 23.779 1.00124.28 ATOM 19 CG TYR C 543 -55.903 15.754 25.241 1.00129.53 ATOM 20 CD1 TYR C 543 -56.984 16.451 25.769 1.00131.14 ATOM 21 CD2 TYR C 543 -55.161 14.949 26.095 1.00129.62 ATOM 22 CE1 TYR C 543 -57.317 16.349 27.106 1.00131.10 ATOM 23 CE2 TYR C 543 -55.488 14.840 27.433 1.00132.97 ATOM 24 CZ TYR C 543 -56.566 15.542 27.934 1.00130.47 ATOM 25 OH TYR C 543 -56.891 15.435 29.267 1.00124.98 ATOM 26 N LYS C 544 -55.988 15.796 20.695 1.00110.61 ATOM 27 CA LYS C 544 -55.434 16.093 19.370 1.00105.81 ATOM 28 C LYS C 544 -55.332 17.607 19.123 1.00117.87 ATOM 29 O LYS C 544 -56.324 18.342 19.205 1.00116.35 ATOM 30 CB LYS C 544 -56.252 15.416 18.257 1.00 78.38 ATOM 31 N ALA C 556 -51.073 17.197 15.489 1.00101.26 ATOM 32 CA ALA C 556 -50.357 16.816 16.709 1.00119.52 ATOM 33 C ALA C 556 -51.252 16.089 17.724 1.00135.38 ATOM 34 O ALA C 556 -52.397 16.488 17.962 1.00140.52 ATOM 35 CB ALA C 556 -49.701 18.041 17.352 1.00112.95 ATOM 36 N TYR C 557 -50.714 15.029 18.326 1.00132.22 ATOM 37 CA TYR C 557 -51.459 14.198 19.274 1.00120.61 ATOM 38 C TYR C 557 -50.798 14.170 20.641 1.00122.25 ATOM 39 O TYR C 557 -49.574 14.248 20.744 1.00124.27 ATOM 40 CB TYR C 557 -51.578 12.765 18.750 1.00108.35 ATOM 41 CG TYR C 557 -52.501 12.639 17.572 1.00105.09 ATOM 42 CD1 TYR C 557 -52.008 12.382 16.300 1.00101.03 ATOM 43 CD2 TYR C 557 -53.870 12.801 17.730 1.00109.66 ATOM 44 CE1 TYR C 557 -52.862 12.273 15.214 1.00107.16 ATOM 45 CE2 TYR C 557 -54.730 12.698 16.661 1.00114.01 ATOM 46 CZ TYR C 557 -54.227 12.431 15.402 1.00117.96 ATOM 47 OH TYR C 557 -55.103 12.327 14.339 1.00121.50 ATOM 48 N ALA C 558 -51.606 14.036 21.688 1.00123.42 ATOM 49 CA ALA C 558 -51.074 14.009 23.046 1.00134.12 ATOM 50 C ALA C 558 -51.812 13.048 23.978 1.00137.27 ATOM 51 O ALA C 558 -53.029 12.876 23.891 1.00131.68 ATOM 52 CB ALA C 558 -51.050 15.420 23.643 1.00137.27 ATOM 53 N TRP C 559 -51.044 12.430 24.869 1.00145.04 ATOM 54 CA TRP C 559 -51.569 11.590 25.934 1.00149.21 ATOM 55 C TRP C 559 -51.243 12.281 27.263 1.00168.70 ATOM 56 O TRP C 559 -50.083 12.302 27.683 1.00179.73 ATOM 57 CB TRP C 559 -50.890 10.213 25.909 1.00143.05 ATOM 58 CG TRP C 559 -50.937 9.445 24.587 1.00135.34 ATOM 59 CD1 TRP C 559 -51.441 8.187 24.388 1.00120.66 ATOM 60 CD2 TRP C 559 -50.437 9.879 23.312 1.00143.84 ATOM 61 NE1 TRP C 559 -51.296 7.820 23.073 1.00123.29 ATOM 62 CE2 TRP C 559 -50.684 8.838 22.389 1.00134.44 ATOM 63 CE3 TRP C 559 -49.812 11.046 22.856 1.00151.53 ATOM 64 CZ2 TRP C 559 -50.330 8.931 21.044 1.00132.93 ATOM 65 CZ3 TRP C 559 -49.463 11.136 21.520 1.00151.14 ATOM 66 CH2 TRP C 559 -49.723 10.084 20.630 1.00143.06 ATOM 67 N THR C 560 -52.252 12.861 27.913 1.00174.54 ATOM 68 CA THR C 560 -52.064 13.549 29.202 1.00183.18 ATOM 69 C THR C 560 -51.799 15.057 29.083 1.00181.07 ATOM 70 O THR C 560 -51.539 15.575 27.995 1.00179.33 ATOM 71 CB THR C 560 -50.937 12.910 30.058 1.00109.61 ATOM 72 N ASP C 561 -51.864 15.750 30.217 1.00178.70 ATOM 73 CA ASP C 561 -51.660 17.194 30.255 1.00175.57 ATOM 74 C ASP C 561 -50.292 17.589 29.709 1.00184.99 ATOM 75 O ASP C 561 -50.170 18.561 28.963 1.00188.20 ATOM 76 CB ASP C 561 -51.815 17.713 31.684 1.00166.31 ATOM 77 N GLY C 562 -49.267 16.832 30.089 1.00186.81 ATOM 78 CA GLY C 562 -47.903 17.122 29.686 1.00187.50 ATOM 79 C GLY C 562 -47.729 17.449 28.213 1.00183.55 ATOM 80 O GLY C 562 -47.173 18.494 27.868 1.00190.28 ATOM 81 N GLU C 563 -48.207 16.561 27.343 1.00166.45 ATOM 82 CA GLU C 563 -47.990 16.697 25.901 1.00159.65 ATOM 83 C GLU C 563 -48.821 17.808 25.243 1.00160.74 ATOM 84 O GLU C 563 -48.548 18.212 24.110 1.00152.48 ATOM 85 CB GLU C 563 -48.238 15.358 25.195 1.00151.25 ATOM 86 N LEU C 564 -49.833 18.298 25.953 1.00165.72 ATOM 87 CA LEU C 564 -50.672 19.374 25.435 1.00158.22 ATOM 88 C LEU C 564 -49.967 20.728 25.556 1.00162.88 ATOM 89 O LEU C 564 -50.052 21.567 24.657 1.00162.69 ATOM 90 CB LEU C 564 -52.025 19.396 26.156 1.00147.90 ATOM 91 N GLU C 565 -49.264 20.931 26.667 1.00164.66 ATOM 92 CA GLU C 565 -48.530 22.169 26.903 1.00161.26 ATOM 93 C GLU C 565 -47.530 22.452 25.783 1.00169.08 ATOM 94 O GLU C 565 -47.348 23.603 25.378 1.00168.22 ATOM 95 CB GLU C 565 -47.805 22.105 28.249 1.00152.18 ATOM 96 N GLU C 566 -46.886 21.395 25.289 1.00174.65 ATOM 97 CA GLU C 566 -45.891 21.513 24.223 1.00176.25 ATOM 98 C GLU C 566 -46.537 21.681 22.848 1.00176.44 ATOM 99 O GLU C 566 -45.945 22.286 21.950 1.00180.01 ATOM 100 CB GLU C 566 -44.954 20.300 24.215 1.00167.81 ATOM 101 N LEU C 567 -47.744 21.138 22.689 1.00168.73 ATOM 102 CA LEU C 567 -48.498 21.274 21.442 1.00154.42 ATOM 103 C LEU C 567 -49.076 22.683 21.306 1.00156.73 ATOM 104 O LEU C 567 -49.238 23.187 20.193 1.00153.51 ATOM 105 CB LEU C 567 -49.611 20.224 21.350 1.00136.21 ATOM 106 N ARG C 568 -49.386 23.308 22.442 1.00160.68 ATOM 107 CA ARG C 568 -49.818 24.705 22.470 1.00156.15 ATOM 108 C ARG C 568 -48.735 25.586 21.858 1.00162.65 ATOM 109 O ARG C 568 -49.025 26.517 21.103 1.00159.12 ATOM 110 CB ARG C 568 -50.113 25.155 23.905 1.00148.21 ATOM 111 N LYS C 569 -47.484 25.279 22.195 1.00165.23 ATOM 112 CA LYS C 569 -46.329 25.952 21.613 1.00154.83 ATOM 113 C LYS C 569 -46.198 25.606 20.129 1.00150.63 ATOM 114 O LYS C 569 -47.000 24.843 19.578 1.00112.02 ATOM 115 CB LYS C 569 -45.055 25.556 22.362 1.00146.61 ATOM 116 N LEU C 577 -57.937 22.008 19.614 1.00102.06 ATOM 117 CA LEU C 577 -57.794 21.161 20.799 1.00112.83 ATOM 118 C LEU C 577 -58.990 20.224 21.050 1.00123.16 ATOM 119 O LEU C 577 -59.768 20.447 21.986 1.00106.63 ATOM 120 CB LEU C 577 -57.568 22.030 22.033 1.00108.09 ATOM 121 N GLN C 578 -59.117 19.173 20.232 1.00135.28 ATOM 122 CA GLN C 578 -60.237 18.220 20.331 1.00130.50 ATOM 123 C GLN C 578 -59.990 17.100 21.348 1.00139.93 ATOM 124 O GLN C 578 -58.985 16.396 21.271 1.00150.74 ATOM 125 CB GLN C 578 -60.554 17.605 18.961 1.00107.89 ATOM 126 N ARG C 579 -60.920 16.931 22.287 1.00133.27 ATOM 127 CA ARG C 579 -60.804 15.903 23.324 1.00123.64 ATOM 128 C ARG C 579 -61.537 14.608 22.942 1.00123.64 ATOM 129 O ARG C 579 -62.757 14.601 22.782 1.00121.39 ATOM 130 CB ARG C 579 -61.330 16.439 24.660 1.00110.14 ATOM 131 N TYR C 580 -60.791 13.513 22.802 1.00128.54 ATOM 132 CA TYR C 580 -61.379 12.234 22.396 1.00122.68 ATOM 133 C TYR C 580 -62.291 11.639 23.462 1.00120.18 ATOM 134 O TYR C 580 -61.869 11.389 24.594 1.00103.03 ATOM 135 CB TYR C 580 -60.297 11.217 22.017 1.00116.60 ATOM 136 CG TYR C 580 -59.575 11.548 20.736 1.00117.83 ATOM 137 CD1 TYR C 580 -60.278 11.752 19.558 1.00118.18 ATOM 138 CD2 TYR C 580 -58.191 11.651 20.700 1.00123.59 ATOM 139 CE1 TYR C 580 -59.622 12.058 18.378 1.00121.58 ATOM 140 CE2 TYR C 580 -57.525 11.957 19.524 1.00125.28 ATOM 141 CZ TYR C 580 -58.247 12.160 18.367 1.00120.59 ATOM 142 OH TYR C 580 -57.594 12.466 17.194 1.00114.59 ATOM 143 N LYS C 581 -63.544 11.403 23.085 1.00125.76 ATOM 144 CA LYS C 581 -64.515 10.799 23.993 1.00116.49 ATOM 145 C LYS C 581 -64.563 9.276 23.821 1.00 95.33 ATOM 146 O LYS C 581 -65.118 8.566 24.662 1.00 89.70 ATOM 147 CB LYS C 581 -65.909 11.401 23.771 1.00122.21 ATOM 148 CG LYS C 581 -65.992 12.920 23.919 1.00123.46 ATOM 149 CD LYS C 581 -67.366 13.446 23.499 1.00109.98 ATOM 150 N GLY C 582 -63.987 8.780 22.726 1.00 98.37 ATOM 151 CA GLY C 582 -63.943 7.348 22.471 1.00 79.98 ATOM 152 C GLY C 582 -63.238 6.990 21.182 1.00 80.04 ATOM 153 O GLY C 582 -62.914 7.869 20.383 1.00 99.03 TER