HEADER ISOMERASE/DNA/INHIBITOR 31-DEC-69 4KPE TITLE Novel fluoroquinolones in complex with topoisomerase IV from S. TITLE 2 pneumoniae and E-site G-gate COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA topoisomerase 4 subunit B; COMPND 3 CHAIN: C, D; COMPND 4 MUTATION: YES; COMPND 5 EC: 5.99.1.3; COMPND 6 FRAGMENT: ParE30, UNP residues ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.43 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 167 REMARK 465 LYS D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 LYS D 172 REMARK 465 LYS D 173 REMARK 465 GLU D 174 REMARK 465 GLU D 175 REMARK 465 VAL D 176 REMARK 465 PHE D 192 REMARK 465 GLY D 193 REMARK 465 LYS D 194 REMARK 465 GLY D 195 REMARK 465 ALA D 196 REMARK 465 THR D 197 DBREF 4KPE D 404 647 UNP Q59961 PARE_STRPN 404 647 SEQRES 1 D 42 PRO LEU TYR LYS MET SER LYS GLY LYS GLY LYS LYS GLU SEQRES 2 D 42 GLU VAL ALA TYR ALA TRP THR ASP GLY GLU LEU GLU GLU SEQRES 3 D 42 LEU ARG LYS GLN PHE GLY LYS GLY ALA THR LEU GLN ARG SEQRES 4 D 42 TYR LYS GLY ATOM 1 N PRO D 541 108.404 -10.075 14.133 1.00 81.42 ATOM 2 CA PRO D 541 108.541 -11.526 13.957 1.00 83.08 ATOM 3 C PRO D 541 107.239 -12.173 13.504 1.00 80.22 ATOM 4 O PRO D 541 106.157 -11.767 13.940 1.00 77.77 ATOM 5 CB PRO D 541 108.902 -12.011 15.363 1.00 85.65 ATOM 6 CG PRO D 541 108.238 -11.032 16.261 1.00 84.44 ATOM 7 CD PRO D 541 108.281 -9.697 15.551 1.00 82.39 ATOM 8 N LEU D 542 107.341 -13.168 12.633 1.00 80.86 ATOM 9 CA LEU D 542 106.154 -13.903 12.222 1.00 80.54 ATOM 10 C LEU D 542 105.856 -15.030 13.212 1.00 87.64 ATOM 11 O LEU D 542 104.692 -15.371 13.426 1.00 90.35 ATOM 12 CB LEU D 542 106.290 -14.443 10.787 1.00 75.84 ATOM 13 CG LEU D 542 106.431 -13.417 9.654 1.00 68.43 ATOM 14 N TYR D 543 106.900 -15.576 13.840 1.00 90.31 ATOM 15 CA TYR D 543 106.758 -16.806 14.629 1.00 94.06 ATOM 16 C TYR D 543 107.355 -16.783 16.042 1.00 93.88 ATOM 17 O TYR D 543 108.227 -15.972 16.346 1.00 96.39 ATOM 18 CB TYR D 543 107.354 -17.981 13.853 1.00 99.29 ATOM 19 CG TYR D 543 106.822 -18.110 12.446 1.00102.41 ATOM 20 CD1 TYR D 543 105.572 -18.663 12.202 1.00104.17 ATOM 21 CD2 TYR D 543 107.566 -17.677 11.363 1.00103.98 ATOM 22 CE1 TYR D 543 105.078 -18.784 10.920 1.00106.57 ATOM 23 CE2 TYR D 543 107.082 -17.795 10.075 1.00107.46 ATOM 24 CZ TYR D 543 105.838 -18.350 9.858 1.00108.98 ATOM 25 OH TYR D 543 105.354 -18.471 8.572 1.00113.08 ATOM 26 N LYS D 544 106.863 -17.687 16.892 1.00 93.68 ATOM 27 CA LYS D 544 107.418 -17.943 18.231 1.00 93.98 ATOM 28 C LYS D 544 107.045 -19.370 18.649 1.00 99.06 ATOM 29 O LYS D 544 105.869 -19.736 18.591 1.00103.08 ATOM 30 CB LYS D 544 106.886 -16.937 19.259 1.00 87.58 ATOM 31 N MET D 545 108.030 -20.172 19.068 1.00 99.82 ATOM 32 CA MET D 545 107.794 -21.605 19.325 1.00104.01 ATOM 33 C MET D 545 107.986 -22.034 20.788 1.00101.20 ATOM 34 O MET D 545 107.939 -21.217 21.709 1.00 96.41 ATOM 35 CB MET D 545 108.664 -22.472 18.398 1.00109.61 ATOM 36 CG MET D 545 107.972 -23.718 17.847 1.00 78.87 ATOM 37 N ALA D 556 111.907 -18.721 21.732 1.00 99.51 ATOM 38 CA ALA D 556 112.609 -17.882 20.758 1.00102.61 ATOM 39 C ALA D 556 111.689 -17.372 19.632 1.00103.96 ATOM 40 O ALA D 556 110.471 -17.585 19.665 1.00100.34 ATOM 41 CB ALA D 556 113.819 -18.626 20.180 1.00103.59 ATOM 42 N TYR D 557 112.282 -16.704 18.639 1.00105.91 ATOM 43 CA TYR D 557 111.524 -16.088 17.545 1.00102.01 ATOM 44 C TYR D 557 112.127 -16.359 16.170 1.00 99.66 ATOM 45 O TYR D 557 113.334 -16.533 16.040 1.00101.06 ATOM 46 CB TYR D 557 111.419 -14.575 17.758 1.00101.92 ATOM 47 CG TYR D 557 110.644 -14.191 18.994 1.00100.54 ATOM 48 CD1 TYR D 557 111.273 -14.108 20.232 1.00101.22 ATOM 49 CD2 TYR D 557 109.281 -13.918 18.925 1.00 99.17 ATOM 50 CE1 TYR D 557 110.571 -13.761 21.367 1.00102.88 ATOM 51 CE2 TYR D 557 108.569 -13.572 20.055 1.00101.23 ATOM 52 CZ TYR D 557 109.220 -13.493 21.277 1.00104.13 ATOM 53 OH TYR D 557 108.520 -13.143 22.412 1.00106.51 ATOM 54 N ALA D 558 111.275 -16.386 15.147 1.00 99.48 ATOM 55 CA ALA D 558 111.714 -16.564 13.762 1.00103.53 ATOM 56 C ALA D 558 111.000 -15.580 12.840 1.00102.81 ATOM 57 O ALA D 558 109.807 -15.306 13.009 1.00 98.70 ATOM 58 CB ALA D 558 111.481 -17.995 13.300 1.00104.91 ATOM 59 N TRP D 559 111.734 -15.061 11.859 1.00103.91 ATOM 60 CA TRP D 559 111.231 -13.983 11.008 1.00 97.82 ATOM 61 C TRP D 559 110.796 -14.444 9.616 1.00 94.64 ATOM 62 O TRP D 559 109.920 -13.835 9.000 1.00 93.82 ATOM 63 CB TRP D 559 112.277 -12.872 10.895 1.00 98.93 ATOM 64 CG TRP D 559 112.130 -11.796 11.930 1.00 97.00 ATOM 65 CD1 TRP D 559 111.514 -10.591 11.770 1.00 96.34 ATOM 66 CD2 TRP D 559 112.607 -11.827 13.286 1.00 99.47 ATOM 67 NE1 TRP D 559 111.578 -9.868 12.935 1.00 97.95 ATOM 68 CE2 TRP D 559 112.242 -10.603 13.882 1.00 99.21 ATOM 69 CE3 TRP D 559 113.303 -12.767 14.052 1.00100.54 ATOM 70 CZ2 TRP D 559 112.552 -10.295 15.211 1.00 97.08 ATOM 71 CZ3 TRP D 559 113.610 -12.457 15.372 1.00 99.84 ATOM 72 CH2 TRP D 559 113.234 -11.233 15.935 1.00 98.32 ATOM 73 N THR D 560 111.412 -15.516 9.127 1.00 94.63 ATOM 74 CA THR D 560 111.087 -16.057 7.813 1.00 93.66 ATOM 75 C THR D 560 110.932 -17.574 7.904 1.00 99.13 ATOM 76 O THR D 560 111.702 -18.232 8.603 1.00101.87 ATOM 77 CB THR D 560 112.182 -15.715 6.786 1.00 94.25 ATOM 78 N ASP D 561 109.937 -18.123 7.206 1.00101.67 ATOM 79 CA ASP D 561 109.688 -19.570 7.204 1.00103.88 ATOM 80 C ASP D 561 110.989 -20.380 7.243 1.00113.07 ATOM 81 O ASP D 561 111.061 -21.427 7.894 1.00114.25 ATOM 82 CB ASP D 561 108.835 -19.978 5.994 1.00102.52 ATOM 83 N GLY D 562 112.014 -19.884 6.550 1.00119.04 ATOM 84 CA GLY D 562 113.330 -20.504 6.554 1.00127.92 ATOM 85 C GLY D 562 114.022 -20.422 7.905 1.00129.45 ATOM 86 O GLY D 562 114.375 -21.446 8.497 1.00129.55 ATOM 87 N GLU D 563 114.224 -19.200 8.394 1.00127.97 ATOM 88 CA GLU D 563 114.759 -18.997 9.737 1.00126.70 ATOM 89 C GLU D 563 113.934 -19.785 10.761 1.00129.15 ATOM 90 O GLU D 563 114.422 -20.123 11.840 1.00131.18 ATOM 91 CB GLU D 563 114.779 -17.504 10.093 1.00116.73 ATOM 92 N LEU D 564 112.688 -20.089 10.403 1.00129.82 ATOM 93 CA LEU D 564 111.759 -20.786 11.292 1.00127.39 ATOM 94 C LEU D 564 112.129 -22.250 11.500 1.00135.62 ATOM 95 O LEU D 564 112.472 -22.657 12.611 1.00135.91 ATOM 96 CB LEU D 564 110.331 -20.704 10.742 1.00120.14 ATOM 97 CG LEU D 564 109.184 -21.051 11.700 1.00111.01 ATOM 98 CD1 LEU D 564 107.930 -21.466 10.932 1.00109.64 ATOM 99 CD2 LEU D 564 109.592 -22.118 12.711 1.00109.96 ATOM 100 N GLU D 565 112.041 -23.035 10.427 1.00142.22 ATOM 101 CA GLU D 565 112.236 -24.484 10.495 1.00148.69 ATOM 102 C GLU D 565 113.541 -24.899 11.180 1.00153.11 ATOM 103 O GLU D 565 113.658 -26.024 11.664 1.00156.23 ATOM 104 CB GLU D 565 112.152 -25.107 9.097 1.00153.71 ATOM 105 N GLU D 566 114.515 -23.993 11.216 1.00152.63 ATOM 106 CA GLU D 566 115.788 -24.262 11.886 1.00154.93 ATOM 107 C GLU D 566 115.623 -24.280 13.409 1.00150.88 ATOM 108 O GLU D 566 116.388 -24.943 14.117 1.00153.11 ATOM 109 CB GLU D 566 116.848 -23.237 11.471 1.00154.56 ATOM 110 N LEU D 567 114.621 -23.550 13.900 1.00145.16 ATOM 111 CA LEU D 567 114.294 -23.519 15.329 1.00141.52 ATOM 112 C LEU D 567 113.427 -24.721 15.729 1.00144.29 ATOM 113 O LEU D 567 113.350 -25.083 16.909 1.00142.87 ATOM 114 CB LEU D 567 113.592 -22.203 15.701 1.00130.73 ATOM 115 N ARG D 568 112.782 -25.331 14.735 1.00145.90 ATOM 116 CA ARG D 568 111.927 -26.498 14.948 1.00145.61 ATOM 117 C ARG D 568 112.766 -27.737 15.269 1.00151.57 ATOM 118 O ARG D 568 112.248 -28.755 15.740 1.00154.19 ATOM 119 CB ARG D 568 111.039 -26.746 13.722 1.00144.15 ATOM 120 N LYS D 569 114.067 -27.641 15.009 1.00152.87 ATOM 121 CA LYS D 569 115.000 -28.685 15.398 1.00155.12 ATOM 122 C LYS D 569 115.213 -28.631 16.910 1.00149.73 ATOM 123 O LYS D 569 114.255 -28.698 17.687 1.00145.21 ATOM 124 CB LYS D 569 116.331 -28.519 14.658 1.00159.17 ATOM 125 N GLN D 570 116.472 -28.501 17.321 1.00149.92 ATOM 126 CA GLN D 570 116.821 -28.445 18.738 1.00142.02 ATOM 127 C GLN D 570 116.749 -27.013 19.277 1.00129.29 ATOM 128 O GLN D 570 115.776 -26.628 19.928 1.00117.50 ATOM 129 CB GLN D 570 118.218 -29.036 18.967 1.00145.94 ATOM 130 N LEU D 577 104.464 -23.319 17.575 1.00 98.84 ATOM 131 CA LEU D 577 104.627 -22.141 16.714 1.00 98.98 ATOM 132 C LEU D 577 103.443 -21.165 16.786 1.00106.54 ATOM 133 O LEU D 577 102.453 -21.325 16.072 1.00111.82 ATOM 134 CB LEU D 577 104.873 -22.557 15.257 1.00 95.06 ATOM 135 N GLN D 578 103.545 -20.156 17.648 1.00104.87 ATOM 136 CA GLN D 578 102.538 -19.100 17.704 1.00102.62 ATOM 137 C GLN D 578 102.684 -18.189 16.490 1.00101.44 ATOM 138 O GLN D 578 103.538 -17.307 16.475 1.00100.64 ATOM 139 CB GLN D 578 102.673 -18.280 18.993 1.00 98.95 ATOM 140 N ARG D 579 101.860 -18.410 15.471 1.00102.39 ATOM 141 CA ARG D 579 101.892 -17.582 14.264 1.00100.86 ATOM 142 C ARG D 579 101.283 -16.195 14.516 1.00100.74 ATOM 143 O ARG D 579 100.067 -16.018 14.392 1.00104.72 ATOM 144 CB ARG D 579 101.163 -18.286 13.106 1.00 99.75 ATOM 145 N TYR D 580 102.120 -15.215 14.862 1.00 97.04 ATOM 146 CA TYR D 580 101.621 -13.876 15.180 1.00 97.86 ATOM 147 C TYR D 580 100.734 -13.348 14.064 1.00 99.82 ATOM 148 O TYR D 580 101.223 -12.963 13.001 1.00100.12 ATOM 149 CB TYR D 580 102.762 -12.898 15.488 1.00 97.79 ATOM 150 CG TYR D 580 103.553 -13.291 16.714 1.00102.09 ATOM 151 CD1 TYR D 580 103.006 -13.182 17.989 1.00103.79 ATOM 152 CD2 TYR D 580 104.844 -13.790 16.597 1.00105.44 ATOM 153 CE1 TYR D 580 103.730 -13.559 19.116 1.00106.36 ATOM 154 CE2 TYR D 580 105.576 -14.167 17.715 1.00107.52 ATOM 155 CZ TYR D 580 105.019 -14.051 18.971 1.00108.37 ATOM 156 OH TYR D 580 105.762 -14.433 20.070 1.00110.39 ATOM 157 N LYS D 581 99.425 -13.348 14.320 1.00101.36 ATOM 158 CA LYS D 581 98.426 -12.943 13.333 1.00100.94 ATOM 159 C LYS D 581 98.558 -11.457 12.976 1.00100.04 ATOM 160 O LYS D 581 98.038 -11.001 11.958 1.00 97.53 ATOM 161 CB LYS D 581 97.013 -13.267 13.841 1.00102.84 ATOM 162 N GLY D 582 99.274 -10.716 13.816 1.00 85.81 ATOM 163 CA GLY D 582 99.489 -9.294 13.618 1.00 85.82 ATOM 164 C GLY D 582 100.048 -8.691 14.892 1.00 88.06 ATOM 165 O GLY D 582 100.297 -9.417 15.855 1.00 90.14 TER