HEADER DNA BINDING PROTEIN/RNA/DNA 26-OCT-13 4NDF TITLE Human Aprataxin (Aptx) bound to RNA-DNA, AMP, and Zn - product COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.94 ANGSTORMS DBREF 4NDF A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 A 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 A 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO A 316 4.451 -0.398 -22.344 1.00 22.52 ATOM 2 CA PRO A 316 4.560 0.990 -21.878 1.00 22.57 ATOM 3 C PRO A 316 4.273 1.101 -20.386 1.00 22.98 ATOM 4 O PRO A 316 3.448 0.351 -19.863 1.00 22.88 ATOM 5 CB PRO A 316 3.477 1.711 -22.685 1.00 24.76 ATOM 6 CG PRO A 316 3.369 0.920 -23.945 1.00 24.83 ATOM 7 CD PRO A 316 3.581 -0.515 -23.528 1.00 25.37 ATOM 8 N LEU A 317 4.967 2.006 -19.709 1.00 20.74 ATOM 9 CA LEU A 317 4.794 2.189 -18.273 1.00 22.16 ATOM 10 C LEU A 317 3.373 2.616 -17.927 1.00 25.50 ATOM 11 O LEU A 317 2.847 3.587 -18.478 1.00 25.18 ATOM 12 CB LEU A 317 5.789 3.224 -17.745 1.00 21.10 ATOM 13 CG LEU A 317 7.246 2.801 -17.850 1.00 17.90 ATOM 14 CD1 LEU A 317 8.157 3.939 -17.433 1.00 17.71 ATOM 15 CD2 LEU A 317 7.467 1.581 -16.977 1.00 16.89 ATOM 16 N ARG A 318 2.757 1.874 -17.014 1.00 26.03 ATOM 17 CA ARG A 318 1.402 2.159 -16.574 1.00 29.65 ATOM 18 C ARG A 318 1.319 1.984 -15.068 1.00 30.37 ATOM 19 O ARG A 318 1.719 0.947 -14.534 1.00 26.01 ATOM 20 CB ARG A 318 0.393 1.231 -17.259 1.00 32.75 ATOM 21 CG ARG A 318 -1.059 1.565 -16.927 1.00 38.55 ATOM 22 CD ARG A 318 -2.034 0.488 -17.391 1.00 43.42 ATOM 23 NE ARG A 318 -2.066 0.347 -18.844 1.00 44.64 ATOM 24 CZ ARG A 318 -2.787 1.111 -19.656 1.00 48.65 ATOM 25 NH1 ARG A 318 -3.539 2.086 -19.163 1.00 50.06 ATOM 26 NH2 ARG A 318 -2.749 0.903 -20.964 1.00 49.84 ATOM 27 N CYS A 319 0.803 3.004 -14.387 1.00 29.19 ATOM 28 CA CYS A 319 0.633 2.956 -12.941 1.00 30.18 ATOM 29 C CYS A 319 -0.314 1.823 -12.537 1.00 31.60 ATOM 30 O CYS A 319 -1.357 1.616 -13.159 1.00 33.41 ATOM 31 CB CYS A 319 0.114 4.297 -12.415 1.00 32.69 ATOM 32 SG CYS A 319 -0.250 4.307 -10.651 1.00 34.76 ATOM 33 N HIS A 320 0.066 1.095 -11.494 1.00 31.05 ATOM 34 CA HIS A 320 -0.727 -0.019 -10.988 1.00 37.54 ATOM 35 C HIS A 320 -1.946 0.438 -10.186 1.00 40.56 ATOM 36 O HIS A 320 -2.865 -0.342 -9.949 1.00 38.23 ATOM 37 CB HIS A 320 0.148 -0.921 -10.114 1.00 38.77 ATOM 38 CG HIS A 320 0.667 -0.253 -8.875 1.00 40.31 ATOM 39 ND1 HIS A 320 1.262 0.992 -8.888 1.00 39.83 ATOM 40 CD2 HIS A 320 0.688 -0.665 -7.585 1.00 40.90 ATOM 41 CE1 HIS A 320 1.620 1.320 -7.659 1.00 42.68 ATOM 42 NE2 HIS A 320 1.283 0.331 -6.849 1.00 32.92 ATOM 43 N GLU A 321 -1.946 1.700 -9.766 1.00 42.79 ATOM 44 CA GLU A 321 -3.011 2.226 -8.915 1.00 50.21 ATOM 45 C GLU A 321 -4.158 2.864 -9.695 1.00 50.04 ATOM 46 O GLU A 321 -5.328 2.615 -9.398 1.00 51.25 ATOM 47 CB GLU A 321 -2.448 3.240 -7.913 1.00 56.75 ATOM 48 CG GLU A 321 -1.435 2.666 -6.933 1.00 61.45 ATOM 49 CD GLU A 321 -2.056 1.709 -5.931 1.00 69.82 ATOM 50 OE1 GLU A 321 -3.296 1.739 -5.765 1.00 73.30 ATOM 51 OE2 GLU A 321 -1.301 0.927 -5.311 1.00 72.67 ATOM 52 N CYS A 322 -3.821 3.687 -10.686 1.00 48.89 ATOM 53 CA CYS A 322 -4.822 4.484 -11.396 1.00 45.39 ATOM 54 C CYS A 322 -4.776 4.300 -12.911 1.00 44.12 ATOM 55 O CYS A 322 -5.509 4.971 -13.639 1.00 46.42 ATOM 56 CB CYS A 322 -4.653 5.965 -11.058 1.00 46.73 ATOM 57 SG CYS A 322 -3.185 6.723 -11.787 1.00 43.27 ATOM 58 N GLN A 323 -3.899 3.408 -13.369 1.00 40.78 ATOM 59 CA GLN A 323 -3.805 3.023 -14.781 1.00 42.50 ATOM 60 C GLN A 323 -3.253 4.102 -15.722 1.00 42.07 ATOM 61 O GLN A 323 -3.184 3.885 -16.932 1.00 40.44 ATOM 62 CB GLN A 323 -5.148 2.491 -15.310 1.00 48.52 ATOM 63 CG GLN A 323 -5.513 1.088 -14.835 1.00 49.57 ATOM 64 CD GLN A 323 -5.814 1.025 -13.346 1.00 51.73 ATOM 65 OE1 GLN A 323 -6.821 1.559 -12.881 1.00 54.32 ATOM 66 NE2 GLN A 323 -4.933 0.374 -12.591 1.00 49.93 ATOM 67 N GLN A 324 -2.856 5.250 -15.180 1.00 39.15 ATOM 68 CA GLN A 324 -2.291 6.314 -16.009 1.00 45.72 ATOM 69 C GLN A 324 -0.986 5.871 -16.678 1.00 35.10 ATOM 70 O GLN A 324 -0.159 5.195 -16.066 1.00 32.66 ATOM 71 CB GLN A 324 -2.074 7.596 -15.195 1.00 48.15 ATOM 72 CG GLN A 324 -1.597 8.785 -16.026 1.00 51.94 ATOM 73 CD GLN A 324 -1.527 10.077 -15.228 1.00 57.35 ATOM 74 OE1 GLN A 324 -2.262 10.261 -14.255 1.00 60.71 ATOM 75 NE2 GLN A 324 -0.636 10.980 -15.634 1.00 56.51 ATOM 76 N LEU A 325 -0.826 6.240 -17.946 1.00 37.20 ATOM 77 CA LEU A 325 0.379 5.917 -18.703 1.00 35.09 ATOM 78 C LEU A 325 1.449 6.977 -18.472 1.00 34.00 ATOM 79 O LEU A 325 1.174 8.169 -18.546 1.00 33.28 ATOM 80 CB LEU A 325 0.055 5.787 -20.197 1.00 37.07 ATOM 81 CG LEU A 325 -0.871 4.614 -20.543 1.00 39.76 ATOM 82 CD1 LEU A 325 -1.288 4.625 -22.009 1.00 38.89 ATOM 83 CD2 LEU A 325 -0.201 3.286 -20.179 1.00 37.23 ATOM 84 N LEU A 326 2.664 6.533 -18.167 1.00 33.33 ATOM 85 CA LEU A 326 3.769 7.446 -17.890 1.00 30.78 ATOM 86 C LEU A 326 4.861 7.262 -18.936 1.00 29.40 ATOM 87 O LEU A 326 5.121 6.144 -19.381 1.00 23.99 ATOM 88 CB LEU A 326 4.317 7.229 -16.475 1.00 28.26 ATOM 89 CG LEU A 326 3.562 7.847 -15.286 1.00 33.17 ATOM 90 CD1 LEU A 326 3.440 9.362 -15.435 1.00 37.25 ATOM 91 CD2 LEU A 326 2.187 7.219 -15.076 1.00 36.07 ATOM 92 N PRO A 327 5.488 8.365 -19.360 1.00 32.11 ATOM 93 CA PRO A 327 6.451 8.246 -20.459 1.00 31.07 ATOM 94 C PRO A 327 7.842 7.811 -20.003 1.00 28.11 ATOM 95 O PRO A 327 8.647 7.420 -20.848 1.00 29.35 ATOM 96 CB PRO A 327 6.491 9.664 -21.033 1.00 32.93 ATOM 97 CG PRO A 327 6.205 10.537 -19.858 1.00 33.87 ATOM 98 CD PRO A 327 5.243 9.769 -18.985 1.00 36.37 ATOM 99 N SER A 328 8.122 7.861 -18.701 1.00 26.60 ATOM 100 CA SER A 328 9.464 7.532 -18.218 1.00 21.85 ATOM 101 C SER A 328 9.503 7.054 -16.770 1.00 19.47 ATOM 102 O SER A 328 8.592 7.323 -15.988 1.00 21.60 ATOM 103 CB SER A 328 10.392 8.744 -18.367 1.00 20.71 ATOM 104 OG SER A 328 10.150 9.702 -17.348 1.00 22.30 ATOM 105 N ILE A 329 10.579 6.359 -16.422 1.00 15.77 ATOM 106 CA ILE A 329 10.808 5.921 -15.050 1.00 16.17 ATOM 107 C ILE A 329 10.899 7.086 -14.045 1.00 20.02 ATOM 108 O ILE A 329 10.277 7.021 -12.985 1.00 19.98 ATOM 109 CB ILE A 329 12.047 5.007 -14.946 1.00 14.58 ATOM 110 CG1 ILE A 329 11.771 3.648 -15.605 1.00 13.22 ATOM 111 CG2 ILE A 329 12.457 4.832 -13.503 1.00 14.71 ATOM 112 CD1 ILE A 329 10.840 2.726 -14.801 1.00 12.86 ATOM 113 N PRO A 330 11.665 8.146 -14.363 1.00 24.49 ATOM 114 CA PRO A 330 11.646 9.277 -13.426 1.00 29.69 ATOM 115 C PRO A 330 10.242 9.863 -13.247 1.00 33.10 ATOM 116 O PRO A 330 9.829 10.118 -12.118 1.00 25.09 ATOM 117 CB PRO A 330 12.568 10.292 -14.096 1.00 31.05 ATOM 118 CG PRO A 330 13.491 9.465 -14.905 1.00 28.77 ATOM 119 CD PRO A 330 12.671 8.344 -15.424 1.00 24.58 ATOM 120 N GLN A 331 9.512 10.054 -14.339 1.00 22.25 ATOM 121 CA GLN A 331 8.152 10.565 -14.224 1.00 28.15 ATOM 122 C GLN A 331 7.242 9.587 -13.485 1.00 22.50 ATOM 123 O GLN A 331 6.387 9.997 -12.708 1.00 28.75 ATOM 124 CB GLN A 331 7.579 10.947 -15.592 1.00 28.80 ATOM 125 CG GLN A 331 8.302 12.126 -16.223 1.00 32.31 ATOM 126 CD GLN A 331 7.634 12.634 -17.481 1.00 36.30 ATOM 127 OE1 GLN A 331 8.259 12.722 -18.538 1.00 37.46 ATOM 128 NE2 GLN A 331 6.363 12.992 -17.371 1.00 37.83 ATOM 129 N LEU A 332 7.434 8.294 -13.713 1.00 19.54 ATOM 130 CA LEU A 332 6.642 7.295 -13.006 1.00 18.58 ATOM 131 C LEU A 332 6.911 7.340 -11.498 1.00 24.15 ATOM 132 O LEU A 332 5.976 7.310 -10.700 1.00 28.23 ATOM 133 CB LEU A 332 6.906 5.891 -13.555 1.00 15.32 ATOM 134 CG LEU A 332 6.285 4.740 -12.754 1.00 21.87 ATOM 135 CD1 LEU A 332 4.771 4.907 -12.651 1.00 23.15 ATOM 136 CD2 LEU A 332 6.637 3.409 -13.385 1.00 21.05 ATOM 137 N LYS A 333 8.183 7.412 -11.115 1.00 20.88 ATOM 138 CA LYS A 333 8.560 7.513 -9.704 1.00 23.01 ATOM 139 C LYS A 333 7.944 8.750 -9.056 1.00 31.07 ATOM 140 O LYS A 333 7.515 8.717 -7.902 1.00 28.60 ATOM 141 CB LYS A 333 10.083 7.553 -9.557 1.00 24.54 ATOM 142 CG LYS A 333 10.781 6.212 -9.772 1.00 24.86 ATOM 143 CD LYS A 333 12.297 6.406 -9.806 1.00 29.53 ATOM 144 CE LYS A 333 13.040 5.084 -9.909 1.00 25.92 ATOM 145 NZ LYS A 333 13.301 4.458 -8.588 1.00 20.25 ATOM 146 N GLU A 334 7.902 9.841 -9.811 1.00 27.96 ATOM 147 CA GLU A 334 7.274 11.068 -9.349 1.00 32.44 ATOM 148 C GLU A 334 5.767 10.870 -9.169 1.00 34.06 ATOM 149 O GLU A 334 5.199 11.248 -8.147 1.00 35.35 ATOM 150 CB GLU A 334 7.559 12.203 -10.339 1.00 32.87 ATOM 151 CG GLU A 334 6.669 13.421 -10.180 1.00 49.26 ATOM 152 CD GLU A 334 7.088 14.310 -9.023 1.00 57.15 ATOM 153 OE1 GLU A 334 7.956 13.889 -8.226 1.00 58.23 ATOM 154 OE2 GLU A 334 6.550 15.435 -8.913 1.00 60.75 ATOM 155 N HIS A 335 5.131 10.259 -10.163 1.00 29.54 ATOM 156 CA HIS A 335 3.692 10.024 -10.135 1.00 30.01 ATOM 157 C HIS A 335 3.286 9.164 -8.944 1.00 30.23 ATOM 158 O HIS A 335 2.253 9.406 -8.319 1.00 32.82 ATOM 159 CB HIS A 335 3.237 9.360 -11.440 1.00 34.79 ATOM 160 CG HIS A 335 1.819 8.878 -11.415 1.00 34.42 ATOM 161 ND1 HIS A 335 0.755 9.669 -11.797 1.00 36.72 ATOM 162 CD2 HIS A 335 1.288 7.684 -11.053 1.00 31.44 ATOM 163 CE1 HIS A 335 -0.368 8.985 -11.666 1.00 37.26 ATOM 164 NE2 HIS A 335 -0.073 7.777 -11.219 1.00 32.95 ATOM 165 N LEU A 336 4.107 8.163 -8.635 1.00 27.80 ATOM 166 CA LEU A 336 3.806 7.212 -7.571 1.00 31.64 ATOM 167 C LEU A 336 3.660 7.887 -6.212 1.00 36.63 ATOM 168 O LEU A 336 2.904 7.418 -5.359 1.00 32.92 ATOM 169 CB LEU A 336 4.877 6.120 -7.496 1.00 24.77 ATOM 170 CG LEU A 336 4.918 5.116 -8.651 1.00 27.18 ATOM 171 CD1 LEU A 336 6.145 4.226 -8.541 1.00 23.01 ATOM 172 CD2 LEU A 336 3.641 4.283 -8.704 1.00 27.29 ATOM 173 N ARG A 337 4.385 8.986 -6.017 1.00 34.21 ATOM 174 CA ARG A 337 4.329 9.736 -4.764 1.00 45.12 ATOM 175 C ARG A 337 2.897 10.084 -4.364 1.00 48.72 ATOM 176 O ARG A 337 2.566 10.114 -3.176 1.00 44.67 ATOM 177 CB ARG A 337 5.164 11.015 -4.862 1.00 52.14 ATOM 178 CG ARG A 337 6.662 10.788 -4.962 1.00 54.67 ATOM 179 CD ARG A 337 7.404 12.117 -5.014 1.00 64.23 ATOM 180 NE ARG A 337 8.719 12.033 -4.382 1.00 69.97 ATOM 181 CZ ARG A 337 8.949 12.295 -3.099 1.00 76.40 ATOM 182 NH1 ARG A 337 7.952 12.670 -2.310 1.00 79.51 ATOM 183 NH2 ARG A 337 10.176 12.188 -2.605 1.00 78.23 ATOM 184 N LYS A 338 2.047 10.330 -5.359 1.00 41.07 ATOM 185 CA LYS A 338 0.675 10.757 -5.094 1.00 51.92 ATOM 186 C LYS A 338 -0.186 9.640 -4.502 1.00 50.41 ATOM 187 O LYS A 338 -1.283 9.891 -4.010 1.00 47.11 ATOM 188 CB LYS A 338 0.013 11.320 -6.360 1.00 54.00 ATOM 189 CG LYS A 338 -0.662 10.274 -7.248 1.00 52.32 ATOM 190 CD LYS A 338 -1.841 10.867 -8.014 1.00 56.74 ATOM 191 CE LYS A 338 -1.383 11.831 -9.100 1.00 58.99 ATOM 192 NZ LYS A 338 -2.517 12.645 -9.624 1.00 63.65 ATOM 193 N HIS A 339 0.309 8.408 -4.554 1.00 44.95 ATOM 194 CA HIS A 339 -0.439 7.275 -4.023 1.00 44.94 ATOM 195 C HIS A 339 0.093 6.831 -2.660 1.00 49.12 ATOM 196 O HIS A 339 -0.143 5.700 -2.236 1.00 47.84 ATOM 197 CB HIS A 339 -0.419 6.102 -5.006 1.00 40.83 ATOM 198 CG HIS A 339 -1.072 6.398 -6.322 1.00 41.00 ATOM 199 ND1 HIS A 339 -2.317 6.982 -6.425 1.00 44.23 ATOM 200 CD2 HIS A 339 -0.658 6.174 -7.593 1.00 38.83 ATOM 201 CE1 HIS A 339 -2.636 7.114 -7.700 1.00 42.92 ATOM 202 NE2 HIS A 339 -1.646 6.632 -8.431 1.00 40.63 ATOM 203 N TRP A 340 0.809 7.722 -1.978 1.00 54.04 ATOM 204 CA TRP A 340 1.338 7.420 -0.649 1.00 55.02 ATOM 205 C TRP A 340 0.302 7.700 0.435 1.00 59.30 ATOM 206 O TRP A 340 -0.071 8.850 0.671 1.00 64.96 ATOM 207 CB TRP A 340 2.618 8.213 -0.369 1.00 55.36 ATOM 208 CG TRP A 340 3.804 7.802 -1.207 1.00 49.72 ATOM 209 CD1 TRP A 340 3.835 6.851 -2.193 1.00 46.55 ATOM 210 CD2 TRP A 340 5.132 8.334 -1.123 1.00 51.38 ATOM 211 NE1 TRP A 340 5.099 6.765 -2.730 1.00 43.86 ATOM 212 CE2 TRP A 340 5.914 7.664 -2.090 1.00 47.73 ATOM 213 CE3 TRP A 340 5.737 9.313 -0.323 1.00 56.30 ATOM 214 CZ2 TRP A 340 7.269 7.944 -2.280 1.00 47.54 ATOM 215 CZ3 TRP A 340 7.084 9.588 -0.511 1.00 55.98 ATOM 216 CH2 TRP A 340 7.834 8.906 -1.484 1.00 51.24 ATOM 217 ZN ZN A 402 -1.349 6.379 -10.458 1.00 32.87 TER