HEADER DNA BINDING PROTEIN/RNA/DNA 26-OCT-13 4NDG TITLE Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate TITLE 2 transition state mimic complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.54 ANGSTORMS DBREF 4NDG A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 A 26 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 A 26 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP THR ATOM 1 N PRO A 316 8.172 -10.175 -32.927 1.00 79.28 ATOM 2 CA PRO A 316 7.574 -10.769 -34.130 1.00 95.71 ATOM 3 C PRO A 316 7.568 -12.294 -34.086 1.00 92.15 ATOM 4 O PRO A 316 8.531 -12.899 -33.617 1.00 76.80 ATOM 5 CB PRO A 316 8.483 -10.264 -35.258 1.00 85.11 ATOM 6 CG PRO A 316 9.062 -8.998 -34.739 1.00 88.06 ATOM 7 CD PRO A 316 9.249 -9.224 -33.260 1.00 87.60 ATOM 8 N LEU A 317 6.497 -12.891 -34.597 1.00 91.76 ATOM 9 CA LEU A 317 6.317 -14.338 -34.595 1.00 71.86 ATOM 10 C LEU A 317 7.374 -15.079 -35.410 1.00 95.51 ATOM 11 O LEU A 317 7.624 -14.758 -36.573 1.00 93.36 ATOM 12 CB LEU A 317 4.929 -14.696 -35.122 1.00 70.13 ATOM 13 CG LEU A 317 3.734 -14.177 -34.324 1.00 73.44 ATOM 14 CD1 LEU A 317 2.448 -14.572 -35.011 1.00 71.05 ATOM 15 CD2 LEU A 317 3.763 -14.745 -32.922 1.00 81.78 ATOM 16 N ARG A 318 7.987 -16.080 -34.789 1.00 96.71 ATOM 17 CA ARG A 318 9.091 -16.826 -35.387 1.00 77.38 ATOM 18 C ARG A 318 8.945 -18.311 -35.084 1.00 89.34 ATOM 19 O ARG A 318 8.698 -18.690 -33.946 1.00 87.95 ATOM 20 CB ARG A 318 10.433 -16.328 -34.864 1.00 80.24 ATOM 21 CG ARG A 318 11.598 -17.252 -35.199 1.00103.33 ATOM 22 CD ARG A 318 12.907 -16.651 -34.722 1.00104.26 ATOM 23 NE ARG A 318 13.208 -15.384 -35.377 1.00105.75 ATOM 24 CZ ARG A 318 13.922 -15.270 -36.492 1.00108.10 ATOM 25 NH1 ARG A 318 14.140 -14.072 -37.020 1.00109.70 ATOM 26 NH2 ARG A 318 14.445 -16.349 -37.061 1.00107.11 ATOM 27 N CYS A 319 9.057 -19.142 -36.114 1.00 93.47 ATOM 28 CA CYS A 319 8.920 -20.585 -35.951 1.00 86.04 ATOM 29 C CYS A 319 10.026 -21.185 -35.080 1.00 84.25 ATOM 30 O CYS A 319 11.202 -20.879 -35.262 1.00 79.52 ATOM 31 CB CYS A 319 8.908 -21.285 -37.310 1.00 84.01 ATOM 32 SG CYS A 319 8.578 -23.069 -37.215 1.00 96.90 ATOM 33 N HIS A 320 9.648 -22.030 -34.129 1.00 78.84 ATOM 34 CA HIS A 320 10.625 -22.675 -33.256 1.00 80.48 ATOM 35 C HIS A 320 11.320 -23.837 -33.969 1.00 93.14 ATOM 36 O HIS A 320 12.285 -24.395 -33.460 1.00 97.75 ATOM 37 CB HIS A 320 9.953 -23.180 -31.983 1.00 74.52 ATOM 38 CG HIS A 320 9.051 -24.347 -32.209 1.00 78.00 ATOM 39 ND1 HIS A 320 7.994 -24.308 -33.092 1.00 76.50 ATOM 40 CD2 HIS A 320 9.045 -25.586 -31.665 1.00 81.36 ATOM 41 CE1 HIS A 320 7.376 -25.475 -33.082 1.00 79.25 ATOM 42 NE2 HIS A 320 7.994 -26.268 -32.225 1.00 80.20 ATOM 43 N GLU A 321 10.826 -24.174 -35.156 1.00104.87 ATOM 44 CA GLU A 321 11.329 -25.298 -35.944 1.00108.29 ATOM 45 C GLU A 321 12.270 -24.856 -37.058 1.00105.91 ATOM 46 O GLU A 321 13.419 -25.287 -37.105 1.00112.30 ATOM 47 CB GLU A 321 10.156 -26.114 -36.536 1.00111.51 ATOM 48 CG GLU A 321 9.285 -26.907 -35.553 1.00110.20 ATOM 49 CD GLU A 321 9.890 -28.258 -35.177 1.00110.90 ATOM 50 OE1 GLU A 321 10.789 -28.726 -35.908 1.00110.70 ATOM 51 OE2 GLU A 321 9.447 -28.864 -34.175 1.00109.89 ATOM 52 N CYS A 322 11.769 -24.060 -37.996 1.00 98.30 ATOM 53 CA CYS A 322 12.601 -23.586 -39.105 1.00 99.34 ATOM 54 C CYS A 322 13.196 -22.176 -38.923 1.00104.15 ATOM 55 O CYS A 322 13.966 -21.715 -39.770 1.00102.46 ATOM 56 CB CYS A 322 11.803 -23.617 -40.394 1.00 97.26 ATOM 57 SG CYS A 322 10.422 -22.498 -40.380 1.00106.74 ATOM 58 N GLN A 323 12.821 -21.500 -37.839 1.00102.53 ATOM 59 CA GLN A 323 13.350 -20.177 -37.471 1.00101.36 ATOM 60 C GLN A 323 12.924 -19.120 -38.474 1.00 95.96 ATOM 61 O GLN A 323 13.545 -18.072 -38.575 1.00101.27 ATOM 62 CB GLN A 323 14.885 -20.213 -37.394 1.00106.28 ATOM 63 CG GLN A 323 15.554 -19.625 -36.158 1.00107.56 ATOM 64 CD GLN A 323 14.956 -20.164 -34.868 1.00107.62 ATOM 65 OE1 GLN A 323 14.791 -21.375 -34.716 1.00106.14 ATOM 66 NE2 GLN A 323 14.747 -19.285 -33.894 1.00106.68 ATOM 67 N GLN A 324 11.827 -19.375 -39.178 1.00106.93 ATOM 68 CA GLN A 324 11.380 -18.447 -40.211 1.00 97.55 ATOM 69 C GLN A 324 10.427 -17.459 -39.566 1.00 93.23 ATOM 70 O GLN A 324 9.739 -17.792 -38.603 1.00 87.76 ATOM 71 CB GLN A 324 10.676 -19.174 -41.356 1.00111.82 ATOM 72 CG GLN A 324 10.220 -18.273 -42.497 1.00125.63 ATOM 73 CD GLN A 324 9.176 -18.937 -43.367 1.00132.56 ATOM 74 OE1 GLN A 324 9.211 -20.145 -43.578 1.00138.83 ATOM 75 NE2 GLN A 324 8.249 -18.144 -43.893 1.00130.31 ATOM 76 N LEU A 325 10.411 -16.234 -40.073 1.00 96.15 ATOM 77 CA LEU A 325 9.513 -15.212 -39.562 1.00106.22 ATOM 78 C LEU A 325 8.095 -15.403 -40.117 1.00106.49 ATOM 79 O LEU A 325 7.924 -15.749 -41.281 1.00108.84 ATOM 80 CB LEU A 325 10.047 -13.828 -39.932 1.00105.73 ATOM 81 CG LEU A 325 9.293 -12.617 -39.391 1.00104.43 ATOM 82 CD1 LEU A 325 9.343 -12.615 -37.875 1.00100.86 ATOM 83 CD2 LEU A 325 9.852 -11.331 -39.954 1.00114.95 ATOM 84 N LEU A 326 7.083 -15.198 -39.278 1.00109.70 ATOM 85 CA LEU A 326 5.688 -15.230 -39.725 1.00 84.50 ATOM 86 C LEU A 326 4.978 -13.945 -39.299 1.00 83.32 ATOM 87 O LEU A 326 5.277 -13.394 -38.239 1.00 88.97 ATOM 88 CB LEU A 326 4.951 -16.453 -39.169 1.00 96.80 ATOM 89 CG LEU A 326 5.105 -17.799 -39.884 1.00 96.52 ATOM 90 CD1 LEU A 326 4.890 -17.652 -41.383 1.00103.91 ATOM 91 CD2 LEU A 326 6.455 -18.430 -39.592 1.00101.10 ATOM 92 N PRO A 327 4.047 -13.455 -40.132 1.00 87.17 ATOM 93 CA PRO A 327 3.391 -12.164 -39.883 1.00 84.60 ATOM 94 C PRO A 327 2.143 -12.214 -38.996 1.00 88.72 ATOM 95 O PRO A 327 1.703 -11.164 -38.530 1.00 97.84 ATOM 96 CB PRO A 327 3.026 -11.694 -41.296 1.00 89.53 ATOM 97 CG PRO A 327 2.795 -12.946 -42.043 1.00 90.43 ATOM 98 CD PRO A 327 3.739 -13.976 -41.476 1.00 98.99 ATOM 99 N SER A 328 1.565 -13.390 -38.787 1.00 84.44 ATOM 100 CA SER A 328 0.352 -13.487 -37.983 1.00 73.74 ATOM 101 C SER A 328 0.151 -14.896 -37.436 1.00 70.69 ATOM 102 O SER A 328 0.755 -15.852 -37.924 1.00 72.40 ATOM 103 CB SER A 328 -0.870 -13.076 -38.803 1.00 78.19 ATOM 104 OG SER A 328 -1.256 -14.114 -39.694 1.00 80.78 ATOM 105 N ILE A 329 -0.690 -15.016 -36.414 1.00 67.31 ATOM 106 CA ILE A 329 -0.990 -16.315 -35.818 1.00 64.69 ATOM 107 C ILE A 329 -1.624 -17.306 -36.811 1.00 83.54 ATOM 108 O ILE A 329 -1.176 -18.445 -36.884 1.00 66.57 ATOM 109 CB ILE A 329 -1.913 -16.168 -34.589 1.00 61.57 ATOM 110 CG1 ILE A 329 -1.229 -15.336 -33.499 1.00 62.66 ATOM 111 CG2 ILE A 329 -2.315 -17.535 -34.045 1.00 59.55 ATOM 112 CD1 ILE A 329 -0.088 -16.046 -32.812 1.00 61.98 ATOM 113 N PRO A 330 -2.646 -16.887 -37.592 1.00 69.23 ATOM 114 CA PRO A 330 -3.197 -17.858 -38.551 1.00 78.21 ATOM 115 C PRO A 330 -2.141 -18.410 -39.511 1.00 74.75 ATOM 116 O PRO A 330 -2.108 -19.614 -39.798 1.00 75.59 ATOM 117 CB PRO A 330 -4.242 -17.040 -39.308 1.00 75.02 ATOM 118 CG PRO A 330 -4.673 -16.000 -38.336 1.00 95.69 ATOM 119 CD PRO A 330 -3.429 -15.634 -37.582 1.00 92.59 ATOM 120 N GLN A 331 -1.265 -17.529 -39.975 1.00 76.62 ATOM 121 CA GLN A 331 -0.191 -17.915 -40.882 0.50 80.02 ATOM 122 C GLN A 331 0.836 -18.821 -40.193 1.00 77.82 ATOM 123 O GLN A 331 1.361 -19.757 -40.809 1.00 85.19 ATOM 124 CB GLN A 331 0.497 -16.668 -41.429 0.50 82.89 ATOM 125 CG GLN A 331 1.371 -16.941 -42.636 0.50 95.35 ATOM 126 CD GLN A 331 1.372 -15.789 -43.608 0.50101.42 ATOM 127 OE1 GLN A 331 0.486 -14.938 -43.566 0.50101.87 ATOM 128 NE2 GLN A 331 2.371 -15.745 -44.484 0.50 97.26 ATOM 129 N LEU A 332 1.120 -18.520 -38.945 1.00 73.83 ATOM 130 CA LEU A 332 2.069 -19.305 -38.170 1.00 71.80 ATOM 131 C LEU A 332 1.535 -20.716 -37.985 1.00 75.82 ATOM 132 O LEU A 332 2.279 -21.684 -38.096 1.00 71.38 ATOM 133 CB LEU A 332 2.344 -18.654 -36.815 1.00 68.16 ATOM 134 CG LEU A 332 3.278 -19.416 -35.893 1.00 71.07 ATOM 135 CD1 LEU A 332 4.601 -19.696 -36.589 1.00 69.71 ATOM 136 CD2 LEU A 332 3.506 -18.648 -34.594 1.00 73.80 ATOM 137 N LYS A 333 0.245 -20.820 -37.689 1.00 69.92 ATOM 138 CA LYS A 333 -0.405 -22.112 -37.534 1.00 73.54 ATOM 139 C LYS A 333 -0.366 -22.899 -38.828 1.00 72.77 ATOM 140 O LYS A 333 0.031 -24.078 -38.842 1.00 99.82 ATOM 141 CB LYS A 333 -1.858 -21.952 -37.067 1.00 75.54 ATOM 142 CG LYS A 333 -2.036 -21.438 -35.650 1.00 71.82 ATOM 143 CD LYS A 333 -3.478 -21.026 -35.416 1.00 70.01 ATOM 144 CE LYS A 333 -3.828 -20.971 -33.943 1.00 59.87 ATOM 145 NZ LYS A 333 -3.437 -22.210 -33.219 1.00 57.43 ATOM 146 N GLU A 334 -0.753 -22.238 -39.921 1.00 93.18 ATOM 147 CA GLU A 334 -0.715 -22.890 -41.228 1.00 92.25 ATOM 148 C GLU A 334 0.695 -23.379 -41.517 1.00 94.31 ATOM 149 O GLU A 334 0.881 -24.470 -42.049 1.00102.33 ATOM 150 CB GLU A 334 -1.197 -21.937 -42.328 1.00 97.79 ATOM 151 CG GLU A 334 -1.212 -22.529 -43.736 1.00111.75 ATOM 152 CD GLU A 334 -2.251 -23.618 -43.946 1.00121.72 ATOM 153 OE1 GLU A 334 -3.099 -23.831 -43.054 1.00122.36 ATOM 154 OE2 GLU A 334 -2.233 -24.255 -45.022 1.00123.16 ATOM 155 N HIS A 335 1.689 -22.594 -41.124 1.00 81.77 ATOM 156 CA HIS A 335 3.077 -22.984 -41.316 1.00 83.72 ATOM 157 C HIS A 335 3.459 -24.206 -40.486 1.00 96.38 ATOM 158 O HIS A 335 4.133 -25.107 -40.980 1.00100.61 ATOM 159 CB HIS A 335 3.998 -21.820 -40.977 1.00 83.26 ATOM 160 CG HIS A 335 5.445 -22.193 -40.942 1.00101.40 ATOM 161 ND1 HIS A 335 6.282 -22.037 -42.026 1.00 90.76 ATOM 162 CD2 HIS A 335 6.202 -22.732 -39.958 1.00 82.69 ATOM 163 CE1 HIS A 335 7.493 -22.458 -41.709 1.00 98.98 ATOM 164 NE2 HIS A 335 7.471 -22.884 -40.459 1.00 86.87 ATOM 165 N LEU A 336 3.026 -24.233 -39.229 1.00 76.30 ATOM 166 CA LEU A 336 3.360 -25.332 -38.331 1.00 73.94 ATOM 167 C LEU A 336 2.732 -26.635 -38.781 1.00 79.83 ATOM 168 O LEU A 336 3.319 -27.698 -38.605 1.00 78.00 ATOM 169 CB LEU A 336 2.924 -25.022 -36.900 1.00 69.57 ATOM 170 CG LEU A 336 3.766 -24.007 -36.125 1.00 72.32 ATOM 171 CD1 LEU A 336 3.216 -23.838 -34.725 1.00 62.40 ATOM 172 CD2 LEU A 336 5.229 -24.425 -36.088 1.00 75.75 ATOM 173 N ARG A 337 1.540 -26.539 -39.362 1.00 84.33 ATOM 174 CA ARG A 337 0.826 -27.704 -39.882 1.00 83.54 ATOM 175 C ARG A 337 1.713 -28.674 -40.659 1.00 85.07 ATOM 176 O ARG A 337 1.543 -29.892 -40.582 1.00 85.18 ATOM 177 CB ARG A 337 -0.314 -27.252 -40.801 1.00 92.77 ATOM 178 CG ARG A 337 -1.633 -26.971 -40.113 1.00 90.99 ATOM 179 CD ARG A 337 -2.611 -26.312 -41.075 1.00 90.11 ATOM 180 NE ARG A 337 -2.761 -27.064 -42.320 1.00 96.23 ATOM 181 CZ ARG A 337 -3.833 -27.783 -42.641 1.00100.85 ATOM 182 NH1 ARG A 337 -4.859 -27.862 -41.806 1.00 97.20 ATOM 183 NH2 ARG A 337 -3.877 -28.434 -43.795 1.00109.08 ATOM 184 N LYS A 338 2.659 -28.123 -41.409 1.00 92.29 ATOM 185 CA LYS A 338 3.465 -28.913 -42.328 1.00104.58 ATOM 186 C LYS A 338 4.674 -29.542 -41.642 1.00 99.67 ATOM 187 O LYS A 338 5.267 -30.492 -42.149 1.00 94.81 ATOM 188 CB LYS A 338 3.864 -28.012 -43.493 1.00113.95 ATOM 189 CG LYS A 338 2.623 -27.615 -44.281 1.00120.82 ATOM 190 CD LYS A 338 2.819 -26.402 -45.163 1.00127.75 ATOM 191 CE LYS A 338 1.533 -26.101 -45.925 1.00131.63 ATOM 192 NZ LYS A 338 1.586 -24.818 -46.675 1.00133.27 ATOM 193 N HIS A 339 5.021 -29.015 -40.473 1.00 93.94 ATOM 194 CA HIS A 339 6.106 -29.580 -39.680 1.00102.75 ATOM 195 C HIS A 339 5.649 -30.866 -38.980 1.00105.67 ATOM 196 O HIS A 339 6.483 -31.628 -38.492 1.00108.84 ATOM 197 CB HIS A 339 6.614 -28.571 -38.628 1.00102.44 ATOM 198 CG HIS A 339 7.595 -27.561 -39.155 1.00108.44 ATOM 199 ND1 HIS A 339 8.828 -27.911 -39.668 1.00108.87 ATOM 200 CD2 HIS A 339 7.537 -26.208 -39.220 1.00106.45 ATOM 201 CE1 HIS A 339 9.481 -26.821 -40.033 1.00 90.40 ATOM 202 NE2 HIS A 339 8.721 -25.772 -39.771 1.00104.02 ATOM 203 N TRP A 340 4.345 -31.155 -38.995 1.00107.67 ATOM 204 CA TRP A 340 3.824 -32.339 -38.293 1.00113.07 ATOM 205 C TRP A 340 4.257 -33.610 -38.943 1.00138.14 ATOM 206 O TRP A 340 4.567 -34.594 -38.270 1.00136.02 ATOM 207 CB TRP A 340 2.295 -32.352 -38.227 1.00106.38 ATOM 208 CG TRP A 340 1.627 -31.191 -37.558 1.00100.03 ATOM 209 CD1 TRP A 340 0.288 -30.933 -37.537 1.00100.71 ATOM 210 CD2 TRP A 340 2.244 -30.164 -36.766 1.00 92.17 ATOM 211 NE1 TRP A 340 0.034 -29.803 -36.805 1.00 97.89 ATOM 212 CE2 TRP A 340 1.217 -29.313 -36.321 1.00 94.51 ATOM 213 CE3 TRP A 340 3.563 -29.875 -36.395 1.00 90.00 ATOM 214 CZ2 TRP A 340 1.470 -28.203 -35.537 1.00 65.89 ATOM 215 CZ3 TRP A 340 3.806 -28.782 -35.630 1.00 93.21 ATOM 216 CH2 TRP A 340 2.771 -27.953 -35.217 1.00 97.25 ATOM 217 N THR A 341 4.267 -33.593 -40.261 1.00 77.12 ATOM 218 CA THR A 341 4.754 -34.731 -40.996 1.00 93.34 ATOM 219 C THR A 341 6.190 -35.102 -40.620 1.00102.94 ATOM 220 O THR A 341 7.168 -34.630 -41.224 1.00105.88 ATOM 221 CB THR A 341 4.662 -34.464 -42.479 1.00 95.98 ATOM 222 OG1 THR A 341 3.278 -34.350 -42.848 1.00 91.72 ATOM 223 CG2 THR A 341 5.247 -35.607 -43.185 1.00 99.71 ATOM 224 ZN ZN A 402 8.977 -23.735 -39.495 1.00 97.51 TER