HEADER DNA BINDING PROTEIN/DNA 26-OCT-13 4NDH TITLE Human Aprataxin (Aptx) bound to DNA, AMP, and Zn - product complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.85 ANGSTORMS DBREF 4NDH A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 A 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 A 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO A 316 -5.695 6.985 -28.623 1.00 24.50 ATOM 2 CA PRO A 316 -5.586 7.425 -30.018 1.00 25.25 ATOM 3 C PRO A 316 -5.801 8.927 -30.132 1.00 25.76 ATOM 4 O PRO A 316 -6.556 9.495 -29.345 1.00 23.91 ATOM 5 CB PRO A 316 -6.719 6.667 -30.703 1.00 30.42 ATOM 6 CG PRO A 316 -6.847 5.413 -29.897 1.00 32.48 ATOM 7 CD PRO A 316 -6.611 5.837 -28.480 1.00 29.46 ATOM 8 N LEU A 317 -5.128 9.556 -31.087 1.00 22.50 ATOM 9 CA LEU A 317 -5.177 11.005 -31.229 1.00 26.93 ATOM 10 C LEU A 317 -6.503 11.460 -31.818 1.00 26.47 ATOM 11 O LEU A 317 -6.887 11.025 -32.903 1.00 27.01 ATOM 12 CB LEU A 317 -4.037 11.480 -32.124 1.00 27.55 ATOM 13 CG LEU A 317 -2.618 11.175 -31.644 1.00 23.61 ATOM 14 CD1 LEU A 317 -1.635 11.574 -32.728 1.00 22.27 ATOM 15 CD2 LEU A 317 -2.301 11.879 -30.329 1.00 22.73 ATOM 16 N ARG A 318 -7.190 12.344 -31.102 1.00 24.13 ATOM 17 CA ARG A 318 -8.473 12.857 -31.564 0.50 25.17 ATOM 18 C ARG A 318 -8.545 14.367 -31.423 1.00 24.15 ATOM 19 O ARG A 318 -8.141 14.935 -30.411 1.00 23.57 ATOM 20 CB ARG A 318 -9.636 12.199 -30.819 0.50 27.19 ATOM 21 CG ARG A 318 -9.914 10.769 -31.251 0.50 30.60 ATOM 22 CD ARG A 318 -11.254 10.285 -30.729 0.50 38.32 ATOM 23 NE ARG A 318 -11.509 8.894 -31.095 0.50 42.37 ATOM 24 CZ ARG A 318 -12.055 8.509 -32.245 0.50 44.44 ATOM 25 NH1 ARG A 318 -12.406 9.410 -33.153 0.50 45.16 ATOM 26 NH2 ARG A 318 -12.250 7.220 -32.490 0.50 46.15 ATOM 27 N CYS A 319 -9.052 15.017 -32.465 1.00 25.07 ATOM 28 CA CYS A 319 -9.194 16.468 -32.460 1.00 25.46 ATOM 29 C CYS A 319 -10.123 16.889 -31.328 1.00 26.36 ATOM 30 O CYS A 319 -11.126 16.234 -31.060 1.00 27.47 ATOM 31 CB CYS A 319 -9.734 16.974 -33.802 1.00 26.73 ATOM 32 SG CYS A 319 -9.904 18.769 -33.858 1.00 27.66 ATOM 33 N HIS A 320 -9.775 17.970 -30.647 1.00 26.28 ATOM 34 CA HIS A 320 -10.562 18.433 -29.510 1.00 27.47 ATOM 35 C HIS A 320 -11.739 19.280 -29.973 1.00 29.40 ATOM 36 O HIS A 320 -12.663 19.545 -29.206 1.00 30.99 ATOM 37 CB HIS A 320 -9.689 19.249 -28.556 1.00 29.02 ATOM 38 CG HIS A 320 -9.176 20.520 -29.153 1.00 28.80 ATOM 39 ND1 HIS A 320 -8.549 20.564 -30.380 1.00 26.79 ATOM 40 CD2 HIS A 320 -9.198 21.795 -28.695 1.00 30.76 ATOM 41 CE1 HIS A 320 -8.202 21.811 -30.650 1.00 27.72 ATOM 42 NE2 HIS A 320 -8.586 22.578 -29.645 1.00 29.97 ATOM 43 N GLU A 321 -11.700 19.713 -31.227 1.00 29.58 ATOM 44 CA GLU A 321 -12.765 20.556 -31.756 1.00 33.61 ATOM 45 C GLU A 321 -13.865 19.766 -32.470 1.00 35.48 ATOM 46 O GLU A 321 -15.053 20.032 -32.271 1.00 36.71 ATOM 47 CB GLU A 321 -12.194 21.644 -32.673 1.00 34.47 ATOM 48 CG GLU A 321 -11.210 22.597 -31.983 1.00 39.05 ATOM 49 CD GLU A 321 -11.871 23.551 -30.990 1.00 46.96 ATOM 50 OE1 GLU A 321 -13.104 23.480 -30.799 1.00 51.73 ATOM 51 OE2 GLU A 321 -11.149 24.387 -30.400 1.00 50.35 ATOM 52 N CYS A 322 -13.477 18.797 -33.295 1.00 31.97 ATOM 53 CA CYS A 322 -14.455 18.052 -34.088 1.00 33.55 ATOM 54 C CYS A 322 -14.390 16.545 -33.851 1.00 33.18 ATOM 55 O CYS A 322 -15.112 15.784 -34.493 1.00 34.76 ATOM 56 CB CYS A 322 -14.269 18.340 -35.580 1.00 34.01 ATOM 57 SG CYS A 322 -12.783 17.586 -36.277 1.00 33.15 ATOM 58 N GLN A 323 -13.503 16.125 -32.952 1.00 31.41 ATOM 59 CA GLN A 323 -13.375 14.719 -32.548 1.00 36.76 ATOM 60 C GLN A 323 -12.887 13.751 -33.633 1.00 35.67 ATOM 61 O GLN A 323 -12.991 12.536 -33.475 1.00 33.09 ATOM 62 CB GLN A 323 -14.671 14.198 -31.905 1.00 41.50 ATOM 63 CG GLN A 323 -14.957 14.774 -30.520 1.00 44.86 ATOM 64 CD GLN A 323 -15.485 16.197 -30.571 1.00 49.49 ATOM 65 OE1 GLN A 323 -16.451 16.486 -31.277 1.00 52.89 ATOM 66 NE2 GLN A 323 -14.846 17.097 -29.827 1.00 50.07 ATOM 67 N GLN A 324 -12.343 14.278 -34.724 1.00 30.50 ATOM 68 CA GLN A 324 -11.812 13.414 -35.776 1.00 30.61 ATOM 69 C GLN A 324 -10.570 12.647 -35.315 1.00 28.80 ATOM 70 O GLN A 324 -9.706 13.198 -34.635 1.00 27.07 ATOM 71 CB GLN A 324 -11.492 14.226 -37.034 1.00 39.96 ATOM 72 CG GLN A 324 -10.865 13.406 -38.152 1.00 43.19 ATOM 73 CD GLN A 324 -10.721 14.182 -39.444 1.00 48.41 ATOM 74 OE1 GLN A 324 -11.487 15.108 -39.720 1.00 48.54 ATOM 75 NE2 GLN A 324 -9.729 13.808 -40.246 1.00 51.78 ATOM 76 N LEU A 325 -10.488 11.375 -35.692 1.00 29.53 ATOM 77 CA LEU A 325 -9.327 10.552 -35.372 1.00 31.86 ATOM 78 C LEU A 325 -8.199 10.801 -36.367 1.00 32.07 ATOM 79 O LEU A 325 -8.416 10.764 -37.575 1.00 33.18 ATOM 80 CB LEU A 325 -9.708 9.071 -35.383 1.00 35.56 ATOM 81 CG LEU A 325 -8.549 8.074 -35.289 1.00 39.21 ATOM 82 CD1 LEU A 325 -7.890 8.127 -33.921 1.00 37.78 ATOM 83 CD2 LEU A 325 -9.019 6.661 -35.602 1.00 44.95 ATOM 84 N LEU A 326 -7.001 11.060 -35.850 1.00 28.88 ATOM 85 CA LEU A 326 -5.812 11.274 -36.678 1.00 29.27 ATOM 86 C LEU A 326 -4.741 10.246 -36.324 1.00 27.48 ATOM 87 O LEU A 326 -4.554 9.923 -35.148 1.00 29.01 ATOM 88 CB LEU A 326 -5.264 12.688 -36.480 1.00 30.13 ATOM 89 CG LEU A 326 -5.933 13.833 -37.248 1.00 33.71 ATOM 90 CD1 LEU A 326 -6.022 13.511 -38.729 1.00 36.69 ATOM 91 CD2 LEU A 326 -7.308 14.165 -36.678 1.00 33.36 ATOM 92 N PRO A 327 -4.026 9.731 -37.337 1.00 30.52 ATOM 93 CA PRO A 327 -3.101 8.613 -37.117 1.00 29.80 ATOM 94 C PRO A 327 -1.728 9.016 -36.569 1.00 29.31 ATOM 95 O PRO A 327 -0.968 8.140 -36.150 1.00 31.41 ATOM 96 CB PRO A 327 -2.948 8.021 -38.517 1.00 33.30 ATOM 97 CG PRO A 327 -3.118 9.177 -39.415 1.00 36.49 ATOM 98 CD PRO A 327 -4.134 10.079 -38.764 1.00 34.91 ATOM 99 N SER A 328 -1.408 10.307 -36.573 1.00 23.85 ATOM 100 CA SER A 328 -0.081 10.737 -36.152 1.00 22.94 ATOM 101 C SER A 328 -0.072 12.181 -35.690 1.00 28.73 ATOM 102 O SER A 328 -0.968 12.963 -36.024 1.00 22.79 ATOM 103 CB SER A 328 0.940 10.567 -37.285 1.00 24.44 ATOM 104 OG SER A 328 0.802 11.585 -38.258 1.00 25.69 ATOM 105 N ILE A 329 0.953 12.524 -34.919 1.00 21.95 ATOM 106 CA ILE A 329 1.141 13.898 -34.459 1.00 23.44 ATOM 107 C ILE A 329 1.260 14.906 -35.620 1.00 22.80 ATOM 108 O ILE A 329 0.564 15.922 -35.610 1.00 23.22 ATOM 109 CB ILE A 329 2.326 14.019 -33.457 1.00 24.63 ATOM 110 CG1 ILE A 329 1.953 13.388 -32.113 1.00 23.30 ATOM 111 CG2 ILE A 329 2.734 15.474 -33.259 1.00 26.05 ATOM 112 CD1 ILE A 329 0.894 14.158 -31.344 1.00 22.22 ATOM 113 N PRO A 330 2.119 14.630 -36.625 1.00 26.08 ATOM 114 CA PRO A 330 2.165 15.562 -37.761 1.00 24.99 ATOM 115 C PRO A 330 0.813 15.743 -38.458 1.00 25.29 ATOM 116 O PRO A 330 0.470 16.862 -38.836 1.00 26.75 ATOM 117 CB PRO A 330 3.158 14.895 -38.714 1.00 28.39 ATOM 118 CG PRO A 330 4.075 14.157 -37.805 1.00 27.86 ATOM 119 CD PRO A 330 3.171 13.602 -36.737 1.00 22.58 ATOM 120 N GLN A 331 0.056 14.666 -38.623 1.00 23.14 ATOM 121 CA GLN A 331 -1.258 14.780 -39.253 1.00 25.37 ATOM 122 C GLN A 331 -2.250 15.521 -38.363 1.00 23.95 ATOM 123 O GLN A 331 -3.089 16.282 -38.850 1.00 22.79 ATOM 124 CB GLN A 331 -1.799 13.414 -39.661 1.00 25.64 ATOM 125 CG GLN A 331 -1.146 12.875 -40.920 1.00 28.29 ATOM 126 CD GLN A 331 -1.856 11.654 -41.475 1.00 35.35 ATOM 127 OE1 GLN A 331 -3.072 11.665 -41.677 1.00 37.81 ATOM 128 NE2 GLN A 331 -1.096 10.591 -41.721 1.00 33.80 ATOM 129 N LEU A 332 -2.140 15.313 -37.057 1.00 21.88 ATOM 130 CA LEU A 332 -2.972 16.055 -36.114 1.00 22.30 ATOM 131 C LEU A 332 -2.659 17.544 -36.177 1.00 22.17 ATOM 132 O LEU A 332 -3.566 18.379 -36.221 1.00 23.52 ATOM 133 CB LEU A 332 -2.765 15.545 -34.690 1.00 21.48 ATOM 134 CG LEU A 332 -3.545 16.289 -33.599 1.00 26.25 ATOM 135 CD1 LEU A 332 -5.041 16.153 -33.827 1.00 31.20 ATOM 136 CD2 LEU A 332 -3.158 15.777 -32.215 1.00 25.86 ATOM 137 N LYS A 333 -1.372 17.877 -36.168 1.00 20.13 ATOM 138 CA LYS A 333 -0.957 19.275 -36.182 1.00 27.93 ATOM 139 C LYS A 333 -1.454 19.970 -37.448 1.00 28.44 ATOM 140 O LYS A 333 -1.854 21.131 -37.412 1.00 26.23 ATOM 141 CB LYS A 333 0.565 19.403 -36.034 1.00 28.03 ATOM 142 CG LYS A 333 1.067 18.970 -34.662 1.00 29.60 ATOM 143 CD LYS A 333 2.588 18.891 -34.594 1.00 30.08 ATOM 144 CE LYS A 333 3.234 20.263 -34.627 1.00 31.78 ATOM 145 NZ LYS A 333 3.015 21.050 -33.368 1.00 29.51 ATOM 146 N GLU A 334 -1.450 19.246 -38.562 1.00 27.68 ATOM 147 CA GLU A 334 -1.931 19.817 -39.812 1.00 32.75 ATOM 148 C GLU A 334 -3.447 20.003 -39.776 1.00 35.13 ATOM 149 O GLU A 334 -3.968 21.021 -40.242 1.00 30.93 ATOM 150 CB GLU A 334 -1.513 18.954 -41.004 1.00 38.63 ATOM 151 CG GLU A 334 -1.365 19.744 -42.292 1.00 50.48 ATOM 152 CD GLU A 334 -0.377 20.897 -42.157 1.00 59.84 ATOM 153 OE1 GLU A 334 0.642 20.735 -41.448 1.00 61.73 ATOM 154 OE2 GLU A 334 -0.622 21.968 -42.755 1.00 65.41 ATOM 155 N HIS A 335 -4.153 19.024 -39.215 1.00 26.38 ATOM 156 CA HIS A 335 -5.607 19.112 -39.085 1.00 27.12 ATOM 157 C HIS A 335 -6.035 20.310 -38.231 1.00 27.36 ATOM 158 O HIS A 335 -6.990 21.001 -38.567 1.00 29.51 ATOM 159 CB HIS A 335 -6.192 17.820 -38.497 1.00 25.40 ATOM 160 CG HIS A 335 -7.657 17.912 -38.189 1.00 29.45 ATOM 161 ND1 HIS A 335 -8.635 17.551 -39.092 1.00 32.18 ATOM 162 CD2 HIS A 335 -8.310 18.341 -37.082 1.00 29.82 ATOM 163 CE1 HIS A 335 -9.826 17.748 -38.553 1.00 32.14 ATOM 164 NE2 HIS A 335 -9.657 18.226 -37.333 1.00 28.29 ATOM 165 N LEU A 336 -5.322 20.550 -37.135 1.00 25.60 ATOM 166 CA LEU A 336 -5.682 21.621 -36.196 1.00 26.05 ATOM 167 C LEU A 336 -5.730 23.008 -36.836 1.00 28.99 ATOM 168 O LEU A 336 -6.456 23.886 -36.370 1.00 30.17 ATOM 169 CB LEU A 336 -4.719 21.641 -35.007 1.00 28.63 ATOM 170 CG LEU A 336 -4.814 20.470 -34.029 1.00 28.81 ATOM 171 CD1 LEU A 336 -3.657 20.524 -33.045 1.00 29.69 ATOM 172 CD2 LEU A 336 -6.147 20.491 -33.297 1.00 30.56 ATOM 173 N ARG A 337 -4.950 23.201 -37.896 1.00 30.57 ATOM 174 CA ARG A 337 -4.943 24.462 -38.628 1.00 34.09 ATOM 175 C ARG A 337 -6.323 24.808 -39.176 1.00 44.14 ATOM 176 O ARG A 337 -6.668 25.984 -39.317 1.00 38.86 ATOM 177 CB ARG A 337 -3.943 24.403 -39.781 1.00 47.14 ATOM 178 CG ARG A 337 -2.486 24.419 -39.358 1.00 46.57 ATOM 179 CD ARG A 337 -1.584 24.449 -40.584 1.00 52.58 ATOM 180 NE ARG A 337 -0.441 25.341 -40.407 1.00 55.38 ATOM 181 CZ ARG A 337 -0.334 26.545 -40.962 1.00 62.42 ATOM 182 NH1 ARG A 337 -1.302 27.013 -41.741 1.00 63.93 ATOM 183 NH2 ARG A 337 0.748 27.280 -40.743 1.00 66.82 ATOM 184 N LYS A 338 -7.111 23.781 -39.485 1.00 35.31 ATOM 185 CA LYS A 338 -8.452 23.984 -40.024 1.00 42.54 ATOM 186 C LYS A 338 -9.381 24.678 -39.032 1.00 41.37 ATOM 187 O LYS A 338 -10.387 25.259 -39.432 1.00 44.06 ATOM 188 CB LYS A 338 -9.062 22.652 -40.464 1.00 44.74 ATOM 189 CG LYS A 338 -8.325 21.997 -41.619 1.00 50.97 ATOM 190 CD LYS A 338 -9.020 20.727 -42.080 1.00 55.73 ATOM 191 CE LYS A 338 -8.341 20.150 -43.312 1.00 60.07 ATOM 192 NZ LYS A 338 -9.039 18.938 -43.822 1.00 63.27 ATOM 193 N HIS A 339 -9.041 24.624 -37.746 1.00 35.19 ATOM 194 CA HIS A 339 -9.903 25.185 -36.709 1.00 38.44 ATOM 195 C HIS A 339 -9.461 26.559 -36.210 1.00 44.36 ATOM 196 O HIS A 339 -9.865 26.988 -35.127 1.00 47.53 ATOM 197 CB HIS A 339 -10.023 24.225 -35.528 1.00 32.59 ATOM 198 CG HIS A 339 -10.696 22.935 -35.869 1.00 33.68 ATOM 199 ND1 HIS A 339 -12.018 22.865 -36.247 1.00 37.07 ATOM 200 CD2 HIS A 339 -10.230 21.663 -35.888 1.00 32.17 ATOM 201 CE1 HIS A 339 -12.339 21.607 -36.486 1.00 34.14 ATOM 202 NE2 HIS A 339 -11.272 20.857 -36.278 1.00 31.36 ATOM 203 N TRP A 340 -8.635 27.245 -36.992 1.00 44.04 ATOM 204 CA TRP A 340 -8.239 28.604 -36.641 1.00 45.81 ATOM 205 C TRP A 340 -9.359 29.583 -36.983 1.00 51.01 ATOM 206 O TRP A 340 -9.924 29.536 -38.079 1.00 54.29 ATOM 207 CB TRP A 340 -6.960 29.007 -37.371 1.00 47.17 ATOM 208 CG TRP A 340 -5.727 28.259 -36.948 1.00 43.60 ATOM 209 CD1 TRP A 340 -5.626 27.303 -35.973 1.00 42.50 ATOM 210 CD2 TRP A 340 -4.412 28.414 -37.496 1.00 43.77 ATOM 211 NE1 TRP A 340 -4.327 26.856 -35.882 1.00 35.28 ATOM 212 CE2 TRP A 340 -3.563 27.522 -36.808 1.00 38.27 ATOM 213 CE3 TRP A 340 -3.869 29.225 -38.501 1.00 45.23 ATOM 214 CZ2 TRP A 340 -2.203 27.413 -37.098 1.00 39.07 ATOM 215 CZ3 TRP A 340 -2.516 29.117 -38.785 1.00 46.19 ATOM 216 CH2 TRP A 340 -1.699 28.218 -38.086 1.00 43.07 ATOM 217 ZN ZN A 402 -10.957 18.899 -35.937 1.00 28.19 TER