HEADER DNA BINDING PROTEIN/RNA/DNA 26-OCT-13 4NDI TITLE Human Aprataxin (Aptx) AOA1 variant K197Q bound to RNA-DNA, AMP, and TITLE 2 Zn - product complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.90 ANGSTORMS DBREF 4NDI A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 A 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 A 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO A 316 4.627 -0.305 -22.444 1.00 12.76 ATOM 2 CA PRO A 316 4.632 1.084 -21.967 1.00 14.09 ATOM 3 C PRO A 316 4.317 1.143 -20.471 1.00 11.83 ATOM 4 O PRO A 316 3.489 0.367 -19.992 1.00 13.36 ATOM 5 CB PRO A 316 3.499 1.728 -22.778 1.00 15.79 ATOM 6 CG PRO A 316 3.469 0.946 -24.048 1.00 17.36 ATOM 7 CD PRO A 316 3.792 -0.474 -23.643 1.00 14.16 ATOM 8 N LEU A 317 4.992 2.032 -19.750 1.00 11.88 ATOM 9 CA LEU A 317 4.781 2.199 -18.315 1.00 15.54 ATOM 10 C LEU A 317 3.356 2.665 -17.997 1.00 13.37 ATOM 11 O LEU A 317 2.871 3.664 -18.542 1.00 16.33 ATOM 12 CB LEU A 317 5.775 3.227 -17.761 1.00 11.63 ATOM 13 CG LEU A 317 7.244 2.897 -18.006 1.00 13.17 ATOM 14 CD1 LEU A 317 8.104 4.067 -17.558 1.00 15.87 ATOM 15 CD2 LEU A 317 7.606 1.640 -17.219 1.00 10.12 ATOM 16 N ARG A 318 2.705 1.938 -17.097 1.00 12.33 ATOM 17 CA ARG A 318 1.374 2.272 -16.651 1.00 15.76 ATOM 18 C ARG A 318 1.322 2.188 -15.135 1.00 15.98 ATOM 19 O ARG A 318 1.714 1.170 -14.552 1.00 11.71 ATOM 20 CB ARG A 318 0.351 1.296 -17.236 1.00 18.21 ATOM 21 CG ARG A 318 -1.090 1.653 -16.892 1.00 23.94 ATOM 22 CD ARG A 318 -2.080 0.536 -17.234 1.00 30.24 ATOM 23 NE ARG A 318 -2.146 0.216 -18.664 1.00 32.32 ATOM 24 CZ ARG A 318 -2.793 0.947 -19.572 1.00 35.70 ATOM 25 NH1 ARG A 318 -3.413 2.067 -19.210 1.00 32.18 ATOM 26 NH2 ARG A 318 -2.812 0.567 -20.846 1.00 33.38 ATOM 27 N CYS A 319 0.809 3.241 -14.499 1.00 15.96 ATOM 28 CA CYS A 319 0.591 3.219 -13.049 1.00 13.74 ATOM 29 C CYS A 319 -0.333 2.068 -12.613 1.00 21.39 ATOM 30 O CYS A 319 -1.384 1.825 -13.220 1.00 15.38 ATOM 31 CB CYS A 319 0.055 4.568 -12.556 1.00 15.20 ATOM 32 SG CYS A 319 -0.273 4.528 -10.802 1.00 16.03 ATOM 33 N HIS A 320 0.070 1.357 -11.564 1.00 15.62 ATOM 34 CA HIS A 320 -0.704 0.229 -11.061 1.00 14.82 ATOM 35 C HIS A 320 -1.901 0.658 -10.209 1.00 16.71 ATOM 36 O HIS A 320 -2.763 -0.160 -9.905 1.00 17.96 ATOM 37 CB HIS A 320 0.201 -0.681 -10.223 1.00 18.83 ATOM 38 CG HIS A 320 0.739 -0.026 -8.985 1.00 16.65 ATOM 39 ND1 HIS A 320 1.326 1.221 -8.997 1.00 16.03 ATOM 40 CD2 HIS A 320 0.787 -0.451 -7.699 1.00 18.04 ATOM 41 CE1 HIS A 320 1.705 1.540 -7.772 1.00 17.98 ATOM 42 NE2 HIS A 320 1.381 0.547 -6.961 1.00 16.33 ATOM 43 N GLU A 321 -1.951 1.926 -9.809 1.00 17.23 ATOM 44 CA GLU A 321 -3.066 2.386 -8.972 1.00 20.71 ATOM 45 C GLU A 321 -4.193 3.016 -9.789 1.00 21.16 ATOM 46 O GLU A 321 -5.371 2.772 -9.522 1.00 22.84 ATOM 47 CB GLU A 321 -2.599 3.358 -7.877 1.00 25.29 ATOM 48 CG GLU A 321 -1.606 2.770 -6.868 1.00 29.09 ATOM 49 CD GLU A 321 -2.227 1.724 -5.949 1.00 41.16 ATOM 50 OE1 GLU A 321 -3.473 1.566 -5.954 1.00 42.12 ATOM 51 OE2 GLU A 321 -1.460 1.056 -5.214 1.00 45.67 ATOM 52 N CYS A 322 -3.831 3.807 -10.790 1.00 20.57 ATOM 53 CA CYS A 322 -4.818 4.589 -11.529 1.00 24.86 ATOM 54 C CYS A 322 -4.758 4.362 -13.039 1.00 23.62 ATOM 55 O CYS A 322 -5.509 4.979 -13.779 1.00 25.40 ATOM 56 CB CYS A 322 -4.665 6.082 -11.212 1.00 23.64 ATOM 57 SG CYS A 322 -3.212 6.869 -11.953 1.00 21.42 ATOM 58 N GLN A 323 -3.865 3.483 -13.488 1.00 21.16 ATOM 59 CA GLN A 323 -3.788 3.101 -14.905 1.00 26.72 ATOM 60 C GLN A 323 -3.299 4.216 -15.853 1.00 28.38 ATOM 61 O GLN A 323 -3.297 4.038 -17.075 1.00 27.12 ATOM 62 CB GLN A 323 -5.130 2.527 -15.404 1.00 31.27 ATOM 63 CG GLN A 323 -5.468 1.117 -14.894 1.00 34.72 ATOM 64 CD GLN A 323 -5.645 1.039 -13.380 1.00 33.52 ATOM 65 OE1 GLN A 323 -6.548 1.657 -12.810 1.00 33.97 ATOM 66 NE2 GLN A 323 -4.780 0.271 -12.724 1.00 33.31 ATOM 67 N GLN A 324 -2.879 5.353 -15.303 1.00 25.43 ATOM 68 CA GLN A 324 -2.308 6.409 -16.141 1.00 24.33 ATOM 69 C GLN A 324 -1.037 5.922 -16.823 1.00 20.48 ATOM 70 O GLN A 324 -0.234 5.201 -16.227 1.00 16.13 ATOM 71 CB GLN A 324 -2.010 7.674 -15.336 1.00 25.43 ATOM 72 CG GLN A 324 -1.487 8.832 -16.201 1.00 32.51 ATOM 73 CD GLN A 324 -1.449 10.159 -15.457 1.00 38.05 ATOM 74 OE1 GLN A 324 -2.290 10.421 -14.594 1.00 38.70 ATOM 75 NE2 GLN A 324 -0.465 11.000 -15.785 1.00 40.26 ATOM 76 N LEU A 325 -0.864 6.308 -18.082 1.00 19.29 ATOM 77 CA LEU A 325 0.337 5.967 -18.839 1.00 17.20 ATOM 78 C LEU A 325 1.403 7.049 -18.632 1.00 21.99 ATOM 79 O LEU A 325 1.103 8.244 -18.717 1.00 18.88 ATOM 80 CB LEU A 325 -0.016 5.833 -20.330 1.00 20.75 ATOM 81 CG LEU A 325 -0.923 4.629 -20.633 1.00 28.32 ATOM 82 CD1 LEU A 325 -1.597 4.725 -21.996 1.00 28.37 ATOM 83 CD2 LEU A 325 -0.147 3.304 -20.493 1.00 28.61 ATOM 84 N LEU A 326 2.633 6.623 -18.351 1.00 18.19 ATOM 85 CA LEU A 326 3.761 7.531 -18.095 1.00 19.32 ATOM 86 C LEU A 326 4.854 7.293 -19.130 1.00 19.48 ATOM 87 O LEU A 326 5.093 6.159 -19.525 1.00 20.71 ATOM 88 CB LEU A 326 4.323 7.314 -16.682 1.00 15.98 ATOM 89 CG LEU A 326 3.574 7.932 -15.483 1.00 20.61 ATOM 90 CD1 LEU A 326 3.224 9.426 -15.702 1.00 26.32 ATOM 91 CD2 LEU A 326 2.334 7.145 -15.133 1.00 20.71 ATOM 92 N PRO A 327 5.501 8.368 -19.602 1.00 23.04 ATOM 93 CA PRO A 327 6.480 8.234 -20.690 1.00 22.02 ATOM 94 C PRO A 327 7.898 7.850 -20.258 1.00 21.06 ATOM 95 O PRO A 327 8.715 7.593 -21.132 1.00 23.42 ATOM 96 CB PRO A 327 6.506 9.639 -21.298 1.00 23.11 ATOM 97 CG PRO A 327 6.192 10.533 -20.133 1.00 24.07 ATOM 98 CD PRO A 327 5.184 9.781 -19.317 1.00 24.88 ATOM 99 N SER A 328 8.201 7.830 -18.961 1.00 15.85 ATOM 100 CA SER A 328 9.569 7.523 -18.525 1.00 14.20 ATOM 101 C SER A 328 9.597 7.068 -17.075 1.00 14.71 ATOM 102 O SER A 328 8.644 7.307 -16.334 1.00 13.32 ATOM 103 CB SER A 328 10.489 8.744 -18.705 1.00 15.67 ATOM 104 OG SER A 328 10.213 9.772 -17.749 1.00 18.87 ATOM 105 N ILE A 329 10.680 6.396 -16.684 1.00 13.28 ATOM 106 CA ILE A 329 10.897 6.021 -15.288 1.00 11.91 ATOM 107 C ILE A 329 10.922 7.216 -14.300 1.00 14.18 ATOM 108 O ILE A 329 10.220 7.190 -13.294 1.00 12.39 ATOM 109 CB ILE A 329 12.166 5.133 -15.127 1.00 12.58 ATOM 110 CG1 ILE A 329 11.953 3.751 -15.788 1.00 14.65 ATOM 111 CG2 ILE A 329 12.554 5.002 -13.663 1.00 12.72 ATOM 112 CD1 ILE A 329 10.912 2.838 -15.085 1.00 15.47 ATOM 113 N PRO A 330 11.714 8.268 -14.586 1.00 17.16 ATOM 114 CA PRO A 330 11.640 9.447 -13.708 1.00 17.82 ATOM 115 C PRO A 330 10.205 9.993 -13.540 1.00 17.24 ATOM 116 O PRO A 330 9.780 10.317 -12.424 1.00 16.33 ATOM 117 CB PRO A 330 12.521 10.473 -14.430 1.00 20.31 ATOM 118 CG PRO A 330 13.475 9.664 -15.222 1.00 22.53 ATOM 119 CD PRO A 330 12.743 8.425 -15.633 1.00 17.64 ATOM 120 N GLN A 331 9.454 10.078 -14.627 1.00 14.32 ATOM 121 CA GLN A 331 8.096 10.620 -14.522 1.00 18.52 ATOM 122 C GLN A 331 7.159 9.655 -13.799 1.00 13.23 ATOM 123 O GLN A 331 6.247 10.095 -13.090 1.00 16.18 ATOM 124 CB GLN A 331 7.542 11.055 -15.885 1.00 18.16 ATOM 125 CG GLN A 331 8.275 12.278 -16.438 1.00 20.16 ATOM 126 CD GLN A 331 7.702 12.780 -17.751 1.00 26.31 ATOM 127 OE1 GLN A 331 8.443 13.072 -18.693 1.00 28.52 ATOM 128 NE2 GLN A 331 6.381 12.896 -17.815 1.00 22.46 ATOM 129 N LEU A 332 7.389 8.352 -13.967 1.00 11.88 ATOM 130 CA LEU A 332 6.611 7.353 -13.237 1.00 12.49 ATOM 131 C LEU A 332 6.882 7.474 -11.743 1.00 14.30 ATOM 132 O LEU A 332 5.963 7.442 -10.933 1.00 13.95 ATOM 133 CB LEU A 332 6.932 5.928 -13.709 1.00 11.50 ATOM 134 CG LEU A 332 6.226 4.810 -12.932 1.00 18.31 ATOM 135 CD1 LEU A 332 4.702 4.929 -13.044 1.00 20.97 ATOM 136 CD2 LEU A 332 6.697 3.439 -13.430 1.00 20.89 ATOM 137 N LYS A 333 8.152 7.617 -11.381 1.00 11.41 ATOM 138 CA LYS A 333 8.509 7.729 -9.967 1.00 17.67 ATOM 139 C LYS A 333 7.877 8.969 -9.337 1.00 19.73 ATOM 140 O LYS A 333 7.369 8.908 -8.220 1.00 14.03 ATOM 141 CB LYS A 333 10.030 7.750 -9.776 1.00 17.66 ATOM 142 CG LYS A 333 10.716 6.402 -9.974 1.00 19.13 ATOM 143 CD LYS A 333 12.231 6.611 -9.914 1.00 26.58 ATOM 144 CE LYS A 333 12.999 5.310 -9.941 1.00 24.30 ATOM 145 NZ LYS A 333 13.149 4.658 -8.601 1.00 16.28 ATOM 146 N GLU A 334 7.908 10.088 -10.053 1.00 14.32 ATOM 147 CA GLU A 334 7.257 11.303 -9.576 1.00 17.81 ATOM 148 C GLU A 334 5.746 11.065 -9.389 1.00 19.48 ATOM 149 O GLU A 334 5.168 11.423 -8.358 1.00 18.84 ATOM 150 CB GLU A 334 7.523 12.463 -10.543 1.00 20.68 ATOM 151 CG GLU A 334 6.823 13.758 -10.192 1.00 27.96 ATOM 152 CD GLU A 334 7.342 14.390 -8.905 1.00 38.57 ATOM 153 OE1 GLU A 334 8.475 14.057 -8.471 1.00 37.53 ATOM 154 OE2 GLU A 334 6.609 15.225 -8.324 1.00 46.27 ATOM 155 N HIS A 335 5.121 10.440 -10.379 1.00 16.50 ATOM 156 CA HIS A 335 3.679 10.177 -10.339 1.00 15.96 ATOM 157 C HIS A 335 3.261 9.310 -9.151 1.00 17.76 ATOM 158 O HIS A 335 2.227 9.561 -8.532 1.00 19.43 ATOM 159 CB HIS A 335 3.214 9.523 -11.650 1.00 18.11 ATOM 160 CG HIS A 335 1.791 9.054 -11.621 1.00 17.32 ATOM 161 ND1 HIS A 335 0.732 9.866 -11.965 1.00 18.49 ATOM 162 CD2 HIS A 335 1.253 7.858 -11.279 1.00 17.70 ATOM 163 CE1 HIS A 335 -0.399 9.191 -11.834 1.00 24.04 ATOM 164 NE2 HIS A 335 -0.110 7.970 -11.418 1.00 15.63 ATOM 165 N LEU A 336 4.062 8.284 -8.845 1.00 15.68 ATOM 166 CA LEU A 336 3.723 7.312 -7.806 1.00 13.33 ATOM 167 C LEU A 336 3.595 7.968 -6.434 1.00 19.90 ATOM 168 O LEU A 336 2.869 7.461 -5.580 1.00 19.34 ATOM 169 CB LEU A 336 4.747 6.173 -7.749 1.00 12.32 ATOM 170 CG LEU A 336 4.820 5.177 -8.913 1.00 20.62 ATOM 171 CD1 LEU A 336 6.111 4.347 -8.828 1.00 17.23 ATOM 172 CD2 LEU A 336 3.591 4.282 -8.952 1.00 19.86 ATOM 173 N ARG A 337 4.295 9.093 -6.239 1.00 17.67 ATOM 174 CA ARG A 337 4.204 9.857 -4.997 0.44 22.64 ATOM 175 C ARG A 337 2.766 10.191 -4.619 1.00 23.03 ATOM 176 O ARG A 337 2.415 10.202 -3.433 1.00 22.92 ATOM 177 CB ARG A 337 5.028 11.146 -5.092 0.44 26.54 ATOM 178 CG ARG A 337 6.479 10.892 -5.438 0.44 26.54 ATOM 179 CD ARG A 337 7.370 12.077 -5.112 0.44 31.63 ATOM 180 NE ARG A 337 8.735 11.616 -4.879 0.44 33.39 ATOM 181 CZ ARG A 337 9.351 11.659 -3.703 0.44 33.05 ATOM 182 NH1 ARG A 337 8.738 12.174 -2.644 0.44 30.68 ATOM 183 NH2 ARG A 337 10.591 11.201 -3.593 0.44 33.00 ATOM 184 N LYS A 338 1.934 10.467 -5.615 1.00 20.41 ATOM 185 CA LYS A 338 0.553 10.829 -5.325 1.00 25.91 ATOM 186 C LYS A 338 -0.233 9.673 -4.685 1.00 30.29 ATOM 187 O LYS A 338 -1.293 9.895 -4.111 1.00 23.96 ATOM 188 CB LYS A 338 -0.158 11.331 -6.584 1.00 27.44 ATOM 189 CG LYS A 338 -0.646 10.223 -7.496 1.00 32.13 ATOM 190 CD LYS A 338 -1.937 10.604 -8.201 1.00 39.49 ATOM 191 CE LYS A 338 -1.756 11.774 -9.145 1.00 45.19 ATOM 192 NZ LYS A 338 -3.065 12.155 -9.750 1.00 50.31 ATOM 193 N HIS A 339 0.287 8.446 -4.777 1.00 24.79 ATOM 194 CA HIS A 339 -0.416 7.286 -4.227 1.00 23.84 ATOM 195 C HIS A 339 0.113 6.804 -2.873 1.00 30.04 ATOM 196 O HIS A 339 -0.291 5.745 -2.387 1.00 31.77 ATOM 197 CB HIS A 339 -0.403 6.129 -5.227 1.00 21.95 ATOM 198 CG HIS A 339 -1.002 6.473 -6.557 1.00 21.09 ATOM 199 ND1 HIS A 339 -2.310 6.890 -6.700 1.00 22.92 ATOM 200 CD2 HIS A 339 -0.473 6.463 -7.803 1.00 19.48 ATOM 201 CE1 HIS A 339 -2.561 7.118 -7.977 1.00 21.71 ATOM 202 NE2 HIS A 339 -1.462 6.868 -8.669 1.00 21.30 ATOM 203 N TRP A 340 1.014 7.568 -2.265 1.00 32.48 ATOM 204 CA TRP A 340 1.517 7.228 -0.929 1.00 33.35 ATOM 205 C TRP A 340 0.439 7.430 0.130 1.00 35.76 ATOM 206 O TRP A 340 -0.180 8.493 0.195 1.00 40.39 ATOM 207 CB TRP A 340 2.749 8.067 -0.580 1.00 33.95 ATOM 208 CG TRP A 340 3.950 7.741 -1.422 1.00 31.48 ATOM 209 CD1 TRP A 340 4.028 6.809 -2.418 1.00 30.06 ATOM 210 CD2 TRP A 340 5.247 8.350 -1.337 1.00 34.28 ATOM 211 NE1 TRP A 340 5.296 6.800 -2.960 1.00 32.17 ATOM 212 CE2 TRP A 340 6.062 7.737 -2.316 1.00 30.73 ATOM 213 CE3 TRP A 340 5.798 9.354 -0.527 1.00 38.57 ATOM 214 CZ2 TRP A 340 7.399 8.096 -2.511 1.00 33.79 ATOM 215 CZ3 TRP A 340 7.132 9.713 -0.719 1.00 38.59 ATOM 216 CH2 TRP A 340 7.916 9.080 -1.704 1.00 36.10 ATOM 217 ZN ZN A 402 -1.380 6.558 -10.673 1.00 18.59 TER