HEADER DNA BINDING PROTEIN/RNA/DNA 26-OCT-13 4NDI TITLE Human Aprataxin (Aptx) AOA1 variant K197Q bound to RNA-DNA, AMP, and TITLE 2 Zn - product complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.90 ANGSTORMS DBREF 4NDI B 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 B 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 B 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO B 316 -15.333 -28.881 -44.806 1.00 26.40 ATOM 2 CA PRO B 316 -14.684 -30.188 -44.621 1.00 25.95 ATOM 3 C PRO B 316 -13.238 -30.137 -45.125 1.00 23.89 ATOM 4 O PRO B 316 -12.955 -29.410 -46.078 1.00 23.40 ATOM 5 CB PRO B 316 -15.534 -31.129 -45.484 1.00 29.51 ATOM 6 CG PRO B 316 -16.882 -30.465 -45.549 1.00 29.03 ATOM 7 CD PRO B 316 -16.598 -28.987 -45.561 1.00 28.14 ATOM 8 N LEU B 317 -12.344 -30.876 -44.479 1.00 22.75 ATOM 9 CA LEU B 317 -10.924 -30.876 -44.838 1.00 21.37 ATOM 10 C LEU B 317 -10.670 -31.454 -46.222 1.00 23.93 ATOM 11 O LEU B 317 -11.085 -32.570 -46.521 1.00 23.61 ATOM 12 CB LEU B 317 -10.110 -31.668 -43.809 1.00 20.52 ATOM 13 CG LEU B 317 -10.158 -31.172 -42.356 1.00 23.64 ATOM 14 CD1 LEU B 317 -9.451 -32.146 -41.427 1.00 15.24 ATOM 15 CD2 LEU B 317 -9.559 -29.787 -42.228 1.00 18.88 ATOM 16 N ARG B 318 -9.965 -30.696 -47.055 1.00 24.03 ATOM 17 CA ARG B 318 -9.670 -31.122 -48.417 1.00 23.12 ATOM 18 C ARG B 318 -8.183 -30.927 -48.689 1.00 24.31 ATOM 19 O ARG B 318 -7.640 -29.840 -48.447 1.00 16.43 ATOM 20 CB ARG B 318 -10.492 -30.308 -49.416 1.00 24.12 ATOM 21 CG ARG B 318 -10.405 -30.812 -50.850 1.00 29.34 ATOM 22 CD ARG B 318 -11.090 -29.870 -51.843 1.00 39.78 ATOM 23 NE ARG B 318 -12.549 -29.812 -51.700 1.00 43.02 ATOM 24 CZ ARG B 318 -13.388 -30.751 -52.135 1.00 43.32 ATOM 25 NH1 ARG B 318 -12.921 -31.843 -52.727 1.00 43.12 ATOM 26 NH2 ARG B 318 -14.696 -30.604 -51.969 1.00 40.30 ATOM 27 N CYS B 319 -7.519 -31.971 -49.183 1.00 21.72 ATOM 28 CA CYS B 319 -6.100 -31.867 -49.508 1.00 21.51 ATOM 29 C CYS B 319 -5.851 -30.845 -50.622 1.00 24.47 ATOM 30 O CYS B 319 -6.556 -30.830 -51.632 1.00 25.24 ATOM 31 CB CYS B 319 -5.527 -33.224 -49.928 1.00 23.13 ATOM 32 SG CYS B 319 -3.799 -33.103 -50.496 1.00 23.82 ATOM 33 N HIS B 320 -4.840 -29.998 -50.444 1.00 23.58 ATOM 34 CA HIS B 320 -4.546 -28.950 -51.422 1.00 20.85 ATOM 35 C HIS B 320 -3.831 -29.481 -52.671 1.00 22.22 ATOM 36 O HIS B 320 -3.806 -28.820 -53.712 1.00 22.49 ATOM 37 CB HIS B 320 -3.722 -27.828 -50.775 1.00 24.21 ATOM 38 CG HIS B 320 -2.339 -28.243 -50.377 1.00 24.02 ATOM 39 ND1 HIS B 320 -2.081 -29.398 -49.666 1.00 18.97 ATOM 40 CD2 HIS B 320 -1.136 -27.656 -50.594 1.00 21.92 ATOM 41 CE1 HIS B 320 -0.778 -29.500 -49.456 1.00 23.97 ATOM 42 NE2 HIS B 320 -0.182 -28.456 -50.009 1.00 23.92 ATOM 43 N GLU B 321 -3.253 -30.673 -52.576 1.00 21.47 ATOM 44 CA GLU B 321 -2.521 -31.233 -53.714 1.00 25.50 ATOM 45 C GLU B 321 -3.400 -32.068 -54.633 1.00 29.22 ATOM 46 O GLU B 321 -3.262 -32.007 -55.855 1.00 33.85 ATOM 47 CB GLU B 321 -1.313 -32.064 -53.256 1.00 30.11 ATOM 48 CG GLU B 321 -0.225 -31.285 -52.499 1.00 35.88 ATOM 49 CD GLU B 321 0.618 -30.361 -53.388 1.00 46.90 ATOM 50 OE1 GLU B 321 0.164 -29.972 -54.486 1.00 53.68 ATOM 51 OE2 GLU B 321 1.751 -30.020 -52.983 1.00 48.75 ATOM 52 N CYS B 322 -4.295 -32.858 -54.053 1.00 28.95 ATOM 53 CA CYS B 322 -5.086 -33.780 -54.859 1.00 29.34 ATOM 54 C CYS B 322 -6.595 -33.650 -54.655 1.00 30.67 ATOM 55 O CYS B 322 -7.363 -34.384 -55.275 1.00 32.33 ATOM 56 CB CYS B 322 -4.635 -35.221 -54.616 1.00 30.77 ATOM 57 SG CYS B 322 -5.165 -35.900 -53.045 1.00 30.60 ATOM 58 N GLN B 323 -7.014 -32.728 -53.789 1.00 26.67 ATOM 59 CA GLN B 323 -8.437 -32.423 -53.600 1.00 30.68 ATOM 60 C GLN B 323 -9.222 -33.532 -52.894 1.00 30.02 ATOM 61 O GLN B 323 -10.453 -33.494 -52.838 1.00 32.62 ATOM 62 CB GLN B 323 -9.113 -32.032 -54.927 1.00 34.13 ATOM 63 CG GLN B 323 -8.729 -30.644 -55.416 1.00 37.22 ATOM 64 CD GLN B 323 -7.256 -30.525 -55.775 1.00 37.93 ATOM 65 OE1 GLN B 323 -6.778 -31.171 -56.708 1.00 35.24 ATOM 66 NE2 GLN B 323 -6.529 -29.702 -55.026 1.00 33.29 ATOM 67 N GLN B 324 -8.511 -34.509 -52.336 1.00 28.70 ATOM 68 CA GLN B 324 -9.173 -35.569 -51.584 1.00 32.28 ATOM 69 C GLN B 324 -9.766 -35.044 -50.276 1.00 33.24 ATOM 70 O GLN B 324 -9.136 -34.246 -49.578 1.00 25.05 ATOM 71 CB GLN B 324 -8.193 -36.690 -51.274 1.00 29.11 ATOM 72 CG GLN B 324 -8.833 -37.884 -50.592 1.00 33.23 ATOM 73 CD GLN B 324 -7.928 -39.097 -50.614 1.00 40.39 ATOM 74 OE1 GLN B 324 -7.209 -39.328 -51.591 1.00 42.54 ATOM 75 NE2 GLN B 324 -7.949 -39.874 -49.536 1.00 39.26 ATOM 76 N LEU B 325 -10.970 -35.507 -49.939 1.00 33.39 ATOM 77 CA LEU B 325 -11.599 -35.160 -48.659 1.00 34.60 ATOM 78 C LEU B 325 -11.078 -36.052 -47.525 1.00 30.08 ATOM 79 O LEU B 325 -11.008 -37.263 -47.687 1.00 28.32 ATOM 80 CB LEU B 325 -13.129 -35.286 -48.764 1.00 37.05 ATOM 81 CG LEU B 325 -13.816 -34.315 -49.736 1.00 39.11 ATOM 82 CD1 LEU B 325 -15.256 -34.752 -50.019 1.00 42.11 ATOM 83 CD2 LEU B 325 -13.767 -32.889 -49.201 1.00 35.85 ATOM 84 N LEU B 326 -10.715 -35.455 -46.388 1.00 24.84 ATOM 85 CA LEU B 326 -10.277 -36.212 -45.201 1.00 27.00 ATOM 86 C LEU B 326 -11.167 -35.912 -43.985 1.00 25.07 ATOM 87 O LEU B 326 -11.671 -34.796 -43.841 1.00 25.67 ATOM 88 CB LEU B 326 -8.806 -35.929 -44.846 1.00 29.82 ATOM 89 CG LEU B 326 -7.644 -36.572 -45.619 1.00 30.49 ATOM 90 CD1 LEU B 326 -7.855 -38.063 -45.826 1.00 31.78 ATOM 91 CD2 LEU B 326 -7.392 -35.861 -46.942 1.00 34.90 ATOM 92 N PRO B 327 -11.372 -36.912 -43.115 1.00 27.06 ATOM 93 CA PRO B 327 -12.375 -36.777 -42.057 1.00 28.25 ATOM 94 C PRO B 327 -11.873 -36.083 -40.804 1.00 26.82 ATOM 95 O PRO B 327 -12.681 -35.688 -39.965 1.00 30.46 ATOM 96 CB PRO B 327 -12.738 -38.232 -41.737 1.00 34.08 ATOM 97 CG PRO B 327 -11.493 -39.002 -42.053 1.00 32.88 ATOM 98 CD PRO B 327 -10.878 -38.298 -43.238 1.00 32.10 ATOM 99 N SER B 328 -10.566 -35.933 -40.664 1.00 21.54 ATOM 100 CA SER B 328 -10.025 -35.389 -39.425 1.00 21.20 ATOM 101 C SER B 328 -8.629 -34.839 -39.657 1.00 21.39 ATOM 102 O SER B 328 -7.975 -35.174 -40.647 1.00 20.62 ATOM 103 CB SER B 328 -9.967 -36.477 -38.355 1.00 20.93 ATOM 104 OG SER B 328 -8.858 -37.330 -38.592 1.00 25.46 ATOM 105 N ILE B 329 -8.187 -33.974 -38.750 1.00 19.99 ATOM 106 CA ILE B 329 -6.848 -33.398 -38.831 1.00 17.71 ATOM 107 C ILE B 329 -5.755 -34.475 -38.774 1.00 19.99 ATOM 108 O ILE B 329 -4.849 -34.462 -39.606 1.00 18.89 ATOM 109 CB ILE B 329 -6.630 -32.294 -37.766 1.00 22.97 ATOM 110 CG1 ILE B 329 -7.467 -31.058 -38.111 1.00 18.70 ATOM 111 CG2 ILE B 329 -5.161 -31.885 -37.687 1.00 21.66 ATOM 112 CD1 ILE B 329 -6.915 -30.272 -39.299 1.00 20.15 ATOM 113 N PRO B 330 -5.839 -35.421 -37.808 1.00 20.43 ATOM 114 CA PRO B 330 -4.781 -36.442 -37.823 1.00 22.58 ATOM 115 C PRO B 330 -4.710 -37.204 -39.149 1.00 25.04 ATOM 116 O PRO B 330 -3.605 -37.490 -39.636 1.00 25.07 ATOM 117 CB PRO B 330 -5.189 -37.388 -36.689 1.00 26.03 ATOM 118 CG PRO B 330 -5.993 -36.543 -35.771 1.00 28.33 ATOM 119 CD PRO B 330 -6.720 -35.564 -36.631 1.00 20.29 ATOM 120 N GLN B 331 -5.865 -37.506 -39.742 1.00 20.38 ATOM 121 CA GLN B 331 -5.872 -38.238 -41.005 1.00 21.46 ATOM 122 C GLN B 331 -5.397 -37.364 -42.162 1.00 26.08 ATOM 123 O GLN B 331 -4.713 -37.855 -43.057 1.00 22.43 ATOM 124 CB GLN B 331 -7.236 -38.877 -41.284 1.00 22.84 ATOM 125 CG GLN B 331 -7.546 -39.996 -40.294 1.00 25.27 ATOM 126 CD GLN B 331 -8.809 -40.764 -40.621 1.00 37.50 ATOM 127 OE1 GLN B 331 -9.647 -40.994 -39.744 1.00 40.64 ATOM 128 NE2 GLN B 331 -8.947 -41.183 -41.874 1.00 35.28 ATOM 129 N LEU B 332 -5.743 -36.077 -42.134 1.00 17.83 ATOM 130 CA LEU B 332 -5.193 -35.127 -43.109 1.00 18.84 ATOM 131 C LEU B 332 -3.667 -35.064 -43.009 1.00 20.37 ATOM 132 O LEU B 332 -2.948 -35.121 -44.022 1.00 20.33 ATOM 133 CB LEU B 332 -5.769 -33.728 -42.884 1.00 17.66 ATOM 134 CG LEU B 332 -5.204 -32.598 -43.751 1.00 21.99 ATOM 135 CD1 LEU B 332 -5.531 -32.835 -45.215 1.00 22.49 ATOM 136 CD2 LEU B 332 -5.731 -31.239 -43.293 1.00 19.58 ATOM 137 N LYS B 333 -3.175 -34.950 -41.779 1.00 18.88 ATOM 138 CA LYS B 333 -1.741 -34.800 -41.545 1.00 21.37 ATOM 139 C LYS B 333 -0.979 -36.004 -42.036 1.00 23.95 ATOM 140 O LYS B 333 0.110 -35.859 -42.592 1.00 26.41 ATOM 141 CB LYS B 333 -1.434 -34.502 -40.069 1.00 20.67 ATOM 142 CG LYS B 333 -1.708 -33.038 -39.710 1.00 19.99 ATOM 143 CD LYS B 333 -1.792 -32.795 -38.214 1.00 19.89 ATOM 144 CE LYS B 333 -0.431 -32.646 -37.579 1.00 20.41 ATOM 145 NZ LYS B 333 0.279 -31.435 -38.044 1.00 17.43 ATOM 146 N GLU B 334 -1.555 -37.189 -41.833 1.00 25.35 ATOM 147 CA GLU B 334 -0.932 -38.411 -42.334 0.61 28.50 ATOM 148 C GLU B 334 -0.967 -38.423 -43.855 1.00 27.15 ATOM 149 O GLU B 334 0.036 -38.742 -44.483 1.00 28.57 ATOM 150 CB GLU B 334 -1.597 -39.668 -41.763 0.61 31.44 ATOM 151 CG GLU B 334 -1.065 -40.983 -42.337 0.61 37.89 ATOM 152 CD GLU B 334 0.400 -41.240 -42.005 0.61 39.33 ATOM 153 OE1 GLU B 334 0.912 -40.666 -41.019 0.61 38.89 ATOM 154 OE2 GLU B 334 1.037 -42.018 -42.739 0.61 42.51 ATOM 155 N HIS B 335 -2.104 -38.047 -44.436 1.00 24.04 ATOM 156 CA HIS B 335 -2.261 -38.037 -45.889 1.00 26.24 ATOM 157 C HIS B 335 -1.252 -37.130 -46.584 1.00 29.11 ATOM 158 O HIS B 335 -0.675 -37.509 -47.597 1.00 31.14 ATOM 159 CB HIS B 335 -3.681 -37.616 -46.269 1.00 27.88 ATOM 160 CG HIS B 335 -3.863 -37.332 -47.729 1.00 27.94 ATOM 161 ND1 HIS B 335 -4.248 -38.299 -48.635 1.00 28.07 ATOM 162 CD2 HIS B 335 -3.733 -36.184 -48.438 1.00 23.79 ATOM 163 CE1 HIS B 335 -4.336 -37.761 -49.840 1.00 29.03 ATOM 164 NE2 HIS B 335 -4.035 -36.477 -49.748 1.00 24.41 ATOM 165 N LEU B 336 -1.047 -35.934 -46.033 1.00 26.07 ATOM 166 CA LEU B 336 -0.138 -34.949 -46.615 1.00 26.52 ATOM 167 C LEU B 336 1.268 -35.494 -46.845 1.00 27.67 ATOM 168 O LEU B 336 1.949 -35.065 -47.775 1.00 25.80 ATOM 169 CB LEU B 336 -0.069 -33.689 -45.745 1.00 24.11 ATOM 170 CG LEU B 336 -1.354 -32.860 -45.669 1.00 24.54 ATOM 171 CD1 LEU B 336 -1.253 -31.787 -44.585 1.00 27.15 ATOM 172 CD2 LEU B 336 -1.676 -32.228 -47.016 1.00 24.65 ATOM 173 N ARG B 337 1.693 -36.442 -46.010 1.00 25.62 ATOM 174 CA ARG B 337 3.026 -37.019 -46.131 1.00 30.66 ATOM 175 C ARG B 337 3.252 -37.648 -47.507 1.00 35.45 ATOM 176 O ARG B 337 4.385 -37.697 -47.984 1.00 36.82 ATOM 177 CB ARG B 337 3.283 -38.057 -45.037 1.00 34.45 ATOM 178 CG ARG B 337 3.077 -37.545 -43.618 1.00 41.00 ATOM 179 CD ARG B 337 3.326 -38.646 -42.594 1.00 49.92 ATOM 180 NE ARG B 337 4.735 -39.021 -42.534 1.00 57.47 ATOM 181 CZ ARG B 337 5.632 -38.415 -41.762 1.00 59.11 ATOM 182 NH1 ARG B 337 5.259 -37.403 -40.985 1.00 55.09 ATOM 183 NH2 ARG B 337 6.898 -38.819 -41.769 1.00 61.87 ATOM 184 N LYS B 338 2.180 -38.115 -48.148 1.00 34.61 ATOM 185 CA LYS B 338 2.312 -38.778 -49.451 1.00 40.35 ATOM 186 C LYS B 338 2.636 -37.819 -50.600 1.00 38.52 ATOM 187 O LYS B 338 2.958 -38.258 -51.704 1.00 41.07 ATOM 188 CB LYS B 338 1.059 -39.590 -49.795 1.00 43.97 ATOM 189 CG LYS B 338 -0.067 -38.768 -50.389 1.00 43.58 ATOM 190 CD LYS B 338 -1.357 -39.575 -50.496 1.00 45.58 ATOM 191 CE LYS B 338 -1.490 -40.245 -51.851 1.00 47.55 ATOM 192 NZ LYS B 338 -2.814 -40.912 -52.010 1.00 48.38 ATOM 193 N HIS B 339 2.549 -36.516 -50.348 1.00 31.28 ATOM 194 CA HIS B 339 2.874 -35.540 -51.383 1.00 33.88 ATOM 195 C HIS B 339 4.258 -34.921 -51.226 1.00 39.87 ATOM 196 O HIS B 339 4.669 -34.115 -52.060 1.00 42.12 ATOM 197 CB HIS B 339 1.831 -34.437 -51.445 1.00 27.42 ATOM 198 CG HIS B 339 0.449 -34.927 -51.734 1.00 30.54 ATOM 199 ND1 HIS B 339 0.127 -35.622 -52.881 1.00 29.88 ATOM 200 CD2 HIS B 339 -0.701 -34.814 -51.026 1.00 24.79 ATOM 201 CE1 HIS B 339 -1.162 -35.917 -52.866 1.00 33.93 ATOM 202 NE2 HIS B 339 -1.688 -35.431 -51.755 1.00 26.26 ATOM 203 N TRP B 340 4.970 -35.285 -50.163 1.00 41.69 ATOM 204 CA TRP B 340 6.329 -34.784 -49.956 1.00 45.80 ATOM 205 C TRP B 340 7.262 -35.288 -51.046 1.00 45.87 ATOM 206 O TRP B 340 7.451 -36.493 -51.193 1.00 52.22 ATOM 207 CB TRP B 340 6.875 -35.214 -48.597 1.00 50.54 ATOM 208 CG TRP B 340 6.121 -34.677 -47.415 1.00 50.59 ATOM 209 CD1 TRP B 340 5.079 -33.788 -47.424 1.00 44.38 ATOM 210 CD2 TRP B 340 6.354 -35.009 -46.044 1.00 54.32 ATOM 211 NE1 TRP B 340 4.654 -33.547 -46.136 1.00 44.14 ATOM 212 CE2 TRP B 340 5.420 -34.285 -45.272 1.00 49.13 ATOM 213 CE3 TRP B 340 7.266 -35.849 -45.391 1.00 59.40 ATOM 214 CZ2 TRP B 340 5.370 -34.379 -43.881 1.00 52.82 ATOM 215 CZ3 TRP B 340 7.216 -35.939 -44.009 1.00 61.50 ATOM 216 CH2 TRP B 340 6.274 -35.204 -43.269 1.00 58.24 ATOM 217 ZN ZN B 402 -3.663 -35.305 -51.384 1.00 26.96 TER