HEADER TRANSFERASE 20-NOV-13 4NP6 TITLE Crystal Structure of Adenylate Kinase from Vibrio cholerae O1 biovar TITLE 2 eltor COMPND MOL_ID: 1; COMPND 2 MOLECULE: Adenylate kinase; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.4.3; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP D 150 REMARK 465 VAL D 151 REMARK 465 THR D 152 REMARK 465 GLY D 153 DBREF 4NP6 D 1 214 UNP Q9KTB7 KAD_VIBCH 1 214 MODRES 4NP6 MSE D 4 MET SELENOMETHIONINE MODRES 4NP6 MSE D 24 MET SELENOMETHIONINE MODRES 4NP6 MSE D 37 MET SELENOMETHIONINE MODRES 4NP6 MSE D 102 MET SELENOMETHIONINE MODRES 4NP6 MSE D 123 MET SELENOMETHIONINE SEQRES 1 D 35 GLY ARG ARG ALA HIS LEU PRO SER GLY ARG THR TYR HIS SEQRES 2 D 35 VAL VAL TYR ASN PRO PRO LYS VAL GLU GLY LYS ASP ASP SEQRES 3 D 35 VAL THR GLY GLU ASP LEU VAL ILE ARG ATOM 1 N GLY D 122 5.487 36.638 45.404 1.00 28.76 ATOM 2 CA GLY D 122 5.647 35.434 44.617 1.00 30.25 ATOM 3 C GLY D 122 6.808 34.572 45.062 1.00 36.93 ATOM 4 O GLY D 122 6.968 33.436 44.619 1.00 40.19 ATOM 5 N ARG D 123 7.619 35.117 45.955 1.00 37.16 ATOM 6 CA ARG D 123 8.822 34.448 46.421 1.00 35.27 ATOM 7 C ARG D 123 8.507 33.279 47.323 1.00 30.54 ATOM 8 O ARG D 123 7.628 33.350 48.165 1.00 32.85 ATOM 9 CB ARG D 123 9.701 35.462 47.152 1.00 35.63 ATOM 10 CG ARG D 123 10.163 36.573 46.219 1.00 40.17 ATOM 11 CD ARG D 123 10.566 37.842 46.930 1.00 45.35 ATOM 12 NE ARG D 123 11.833 37.741 47.641 1.00 48.84 ATOM 13 CZ ARG D 123 12.884 38.526 47.427 1.00 55.11 ATOM 14 NH1 ARG D 123 12.846 39.472 46.502 1.00 54.13 ATOM 15 NH2 ARG D 123 13.984 38.360 48.144 1.00 59.03 ATOM 16 N ARG D 124 9.230 32.190 47.134 1.00 35.26 ATOM 17 CA ARG D 124 9.102 31.031 48.007 1.00 37.26 ATOM 18 C ARG D 124 10.506 30.675 48.453 1.00 37.71 ATOM 19 O ARG D 124 11.459 31.080 47.802 1.00 38.18 ATOM 20 CB ARG D 124 8.461 29.857 47.274 1.00 40.09 ATOM 21 CG ARG D 124 7.106 30.173 46.654 1.00 39.45 ATOM 22 CD ARG D 124 6.056 30.444 47.700 1.00 34.77 ATOM 23 NE ARG D 124 4.773 30.649 47.065 1.00 34.75 ATOM 24 CZ ARG D 124 4.265 31.833 46.759 1.00 32.32 ATOM 25 NH1 ARG D 124 4.925 32.939 47.046 1.00 31.56 ATOM 26 NH2 ARG D 124 3.085 31.901 46.167 1.00 33.33 ATOM 27 N ALA D 125 10.659 29.952 49.560 1.00 37.73 ATOM 28 CA ALA D 125 12.010 29.679 50.063 1.00 39.20 ATOM 29 C ALA D 125 12.196 28.275 50.563 1.00 38.27 ATOM 30 O ALA D 125 11.254 27.669 51.053 1.00 40.17 ATOM 31 CB ALA D 125 12.360 30.642 51.168 1.00 41.03 ATOM 32 N HIS D 126 13.424 27.777 50.462 1.00 41.02 ATOM 33 CA HIS D 126 13.826 26.573 51.193 1.00 47.21 ATOM 34 C HIS D 126 14.634 27.025 52.398 1.00 45.09 ATOM 35 O HIS D 126 15.736 27.529 52.255 1.00 44.18 ATOM 36 CB HIS D 126 14.677 25.646 50.325 1.00 50.02 ATOM 37 CG HIS D 126 14.778 24.251 50.850 1.00 57.97 ATOM 38 ND1 HIS D 126 15.944 23.734 51.365 1.00 65.11 ATOM 39 CD2 HIS D 126 13.857 23.263 50.936 1.00 62.43 ATOM 40 CE1 HIS D 126 15.737 22.488 51.755 1.00 68.98 ATOM 41 NE2 HIS D 126 14.480 22.177 51.503 1.00 67.00 ATOM 42 N LEU D 127 14.072 26.860 53.588 1.00 49.36 ATOM 43 CA LEU D 127 14.699 27.386 54.787 1.00 46.69 ATOM 44 C LEU D 127 15.983 26.695 55.239 1.00 50.20 ATOM 45 O LEU D 127 16.874 27.381 55.739 1.00 44.73 ATOM 46 CB LEU D 127 13.709 27.431 55.940 1.00 43.23 ATOM 47 CG LEU D 127 12.614 28.471 55.809 1.00 41.30 ATOM 48 CD1 LEU D 127 12.044 28.691 57.178 1.00 44.94 ATOM 49 CD2 LEU D 127 13.148 29.765 55.237 1.00 37.20 ATOM 50 N PRO D 128 16.084 25.353 55.096 1.00 57.95 ATOM 51 CA PRO D 128 17.309 24.743 55.637 1.00 67.33 ATOM 52 C PRO D 128 18.498 24.812 54.693 1.00 69.47 ATOM 53 O PRO D 128 19.573 24.309 55.043 1.00 77.73 ATOM 54 CB PRO D 128 16.920 23.270 55.860 1.00 64.36 ATOM 55 CG PRO D 128 15.452 23.192 55.658 1.00 58.33 ATOM 56 CD PRO D 128 15.116 24.319 54.703 1.00 55.57 ATOM 57 N SER D 129 18.310 25.410 53.521 1.00 59.46 ATOM 58 CA SER D 129 19.388 25.523 52.550 1.00 62.21 ATOM 59 C SER D 129 19.526 26.964 52.132 1.00 66.25 ATOM 60 O SER D 129 20.625 27.439 51.862 1.00 79.22 ATOM 61 CB SER D 129 19.095 24.659 51.324 1.00 55.55 ATOM 62 OG SER D 129 17.953 25.167 50.633 1.00 52.48 ATOM 63 N GLY D 130 18.396 27.654 52.085 1.00 56.36 ATOM 64 CA GLY D 130 18.370 29.036 51.668 1.00 52.66 ATOM 65 C GLY D 130 17.933 29.143 50.224 1.00 59.44 ATOM 66 O GLY D 130 17.733 30.245 49.713 1.00 64.65 ATOM 67 N ARG D 131 17.781 27.998 49.561 1.00 58.97 ATOM 68 CA ARG D 131 17.364 27.972 48.155 1.00 51.00 ATOM 69 C ARG D 131 15.950 28.457 47.969 1.00 54.30 ATOM 70 O ARG D 131 15.009 27.847 48.447 1.00 59.36 ATOM 71 CB ARG D 131 17.471 26.570 47.581 1.00 51.79 ATOM 72 CG ARG D 131 18.897 26.118 47.393 1.00 58.94 ATOM 73 CD ARG D 131 18.955 24.773 46.740 1.00 66.25 ATOM 74 NE ARG D 131 18.620 23.699 47.662 1.00 74.48 ATOM 75 CZ ARG D 131 17.414 23.156 47.775 1.00 79.73 ATOM 76 NH1 ARG D 131 17.216 22.172 48.645 1.00 84.56 ATOM 77 NH2 ARG D 131 16.409 23.594 47.025 1.00 75.85 ATOM 78 N THR D 132 15.796 29.551 47.246 1.00 56.67 ATOM 79 CA THR D 132 14.478 30.131 47.064 1.00 53.74 ATOM 80 C THR D 132 14.010 30.017 45.619 1.00 59.87 ATOM 81 O THR D 132 14.759 29.568 44.750 1.00 70.24 ATOM 82 CB THR D 132 14.475 31.584 47.488 1.00 47.49 ATOM 83 OG1 THR D 132 15.395 32.313 46.674 1.00 50.64 ATOM 84 CG2 THR D 132 14.917 31.693 48.924 1.00 44.70 ATOM 85 N TYR D 133 12.763 30.417 45.377 1.00 49.04 ATOM 86 CA TYR D 133 12.128 30.335 44.061 1.00 47.26 ATOM 87 C TYR D 133 11.100 31.458 43.935 1.00 40.94 ATOM 88 O TYR D 133 10.941 32.252 44.851 1.00 42.76 ATOM 89 CB TYR D 133 11.471 28.962 43.885 1.00 58.31 ATOM 90 CG TYR D 133 12.398 27.805 44.235 1.00 68.55 ATOM 91 CD1 TYR D 133 13.317 27.320 43.308 1.00 71.79 ATOM 92 CD2 TYR D 133 12.378 27.225 45.503 1.00 65.96 ATOM 93 CE1 TYR D 133 14.176 26.282 43.625 1.00 78.78 ATOM 94 CE2 TYR D 133 13.230 26.184 45.826 1.00 74.43 ATOM 95 CZ TYR D 133 14.126 25.717 44.882 1.00 82.29 ATOM 96 OH TYR D 133 14.975 24.681 45.198 1.00 91.57 ATOM 97 N HIS D 134 10.430 31.549 42.794 1.00 46.67 ATOM 98 CA HIS D 134 9.364 32.527 42.589 1.00 43.73 ATOM 99 C HIS D 134 8.344 31.940 41.651 1.00 47.82 ATOM 100 O HIS D 134 8.691 31.353 40.617 1.00 48.59 ATOM 101 CB HIS D 134 9.880 33.847 42.015 1.00 41.77 ATOM 102 CG HIS D 134 8.880 34.965 42.068 1.00 38.92 ATOM 103 ND1 HIS D 134 7.794 35.035 41.225 1.00 34.94 ATOM 104 CD2 HIS D 134 8.805 36.059 42.865 1.00 35.97 ATOM 105 CE1 HIS D 134 7.097 36.123 41.496 1.00 40.46 ATOM 106 NE2 HIS D 134 7.688 36.765 42.487 1.00 38.28 ATOM 107 N VAL D 135 7.078 32.122 42.008 1.00 52.83 ATOM 108 CA VAL D 135 5.971 31.494 41.297 1.00 55.08 ATOM 109 C VAL D 135 5.915 31.919 39.835 1.00 57.04 ATOM 110 O VAL D 135 5.151 31.358 39.053 1.00 62.89 ATOM 111 CB VAL D 135 4.613 31.766 42.000 1.00 53.10 ATOM 112 CG1 VAL D 135 4.656 31.257 43.429 1.00 55.53 ATOM 113 CG2 VAL D 135 4.267 33.246 41.973 1.00 50.12 ATOM 114 N VAL D 136 6.749 32.887 39.463 1.00 51.48 ATOM 115 CA VAL D 136 6.784 33.395 38.102 1.00 45.60 ATOM 116 C VAL D 136 8.181 33.268 37.499 1.00 47.76 ATOM 117 O VAL D 136 8.369 32.546 36.533 1.00 55.83 ATOM 118 CB VAL D 136 6.290 34.851 38.046 1.00 47.29 ATOM 119 CG1 VAL D 136 6.589 35.450 36.709 1.00 56.19 ATOM 120 CG2 VAL D 136 4.806 34.917 38.335 1.00 39.34 ATOM 121 N TYR D 137 9.170 33.926 38.089 1.00 45.86 ATOM 122 CA TYR D 137 10.474 34.035 37.440 1.00 56.97 ATOM 123 C TYR D 137 11.415 32.887 37.704 1.00 58.39 ATOM 124 O TYR D 137 12.515 32.865 37.154 1.00 54.22 ATOM 125 CB TYR D 137 11.133 35.335 37.851 1.00 60.65 ATOM 126 CG TYR D 137 10.133 36.416 37.753 1.00 58.01 ATOM 127 CD1 TYR D 137 9.850 36.986 36.534 1.00 61.41 ATOM 128 CD2 TYR D 137 9.411 36.817 38.860 1.00 53.26 ATOM 129 CE1 TYR D 137 8.905 37.957 36.418 1.00 65.16 ATOM 130 CE2 TYR D 137 8.459 37.789 38.760 1.00 54.31 ATOM 131 CZ TYR D 137 8.207 38.358 37.537 1.00 62.08 ATOM 132 OH TYR D 137 7.249 39.336 37.429 1.00 66.51 ATOM 133 N ASN D 138 10.981 31.953 38.552 1.00 62.96 ATOM 134 CA ASN D 138 11.785 30.783 38.928 1.00 66.35 ATOM 135 C ASN D 138 10.978 29.647 39.569 1.00 63.63 ATOM 136 O ASN D 138 11.231 29.286 40.705 1.00 60.69 ATOM 137 CB ASN D 138 12.904 31.199 39.888 1.00 63.82 ATOM 138 CG ASN D 138 14.214 30.491 39.596 1.00 72.09 ATOM 139 OD1 ASN D 138 14.229 29.353 39.114 1.00 73.41 ATOM 140 ND2 ASN D 138 15.326 31.168 39.872 1.00 73.64 ATOM 141 N PRO D 139 10.035 29.055 38.823 1.00 61.65 ATOM 142 CA PRO D 139 8.989 28.189 39.381 1.00 62.02 ATOM 143 C PRO D 139 9.426 26.868 40.027 1.00 67.93 ATOM 144 O PRO D 139 10.358 26.192 39.547 1.00 65.74 ATOM 145 CB PRO D 139 8.102 27.901 38.169 1.00 61.87 ATOM 146 CG PRO D 139 8.406 28.982 37.207 1.00 60.06 ATOM 147 CD PRO D 139 9.849 29.258 37.380 1.00 58.90 ATOM 148 N PRO D 140 8.723 26.491 41.114 1.00 65.76 ATOM 149 CA PRO D 140 8.948 25.188 41.730 1.00 61.71 ATOM 150 C PRO D 140 8.508 24.160 40.712 1.00 64.45 ATOM 151 O PRO D 140 7.467 24.329 40.069 1.00 57.85 ATOM 152 CB PRO D 140 7.989 25.196 42.916 1.00 58.10 ATOM 153 CG PRO D 140 6.869 26.083 42.483 1.00 60.29 ATOM 154 CD PRO D 140 7.511 27.149 41.641 1.00 62.00 ATOM 155 N LYS D 141 9.307 23.116 40.550 1.00 70.47 ATOM 156 CA LYS D 141 9.002 22.095 39.574 1.00 74.00 ATOM 157 C LYS D 141 7.619 21.537 39.902 1.00 78.59 ATOM 158 O LYS D 141 6.846 21.187 39.011 1.00 79.92 ATOM 159 CB LYS D 141 10.092 21.023 39.578 1.00 77.15 ATOM 160 CG LYS D 141 11.525 21.590 39.566 1.00 76.17 ATOM 161 CD LYS D 141 12.297 21.296 38.268 1.00 76.09 ATOM 162 CE LYS D 141 13.742 21.790 38.381 1.00 74.67 ATOM 163 NZ LYS D 141 14.497 21.774 37.100 1.00 75.40 ATOM 164 N VAL D 142 7.298 21.497 41.191 1.00 77.70 ATOM 165 CA VAL D 142 5.934 21.231 41.631 1.00 76.21 ATOM 166 C VAL D 142 5.530 22.303 42.612 1.00 72.65 ATOM 167 O VAL D 142 6.174 22.450 43.645 1.00 70.55 ATOM 168 CB VAL D 142 5.791 19.868 42.336 1.00 75.87 ATOM 169 CG1 VAL D 142 4.420 19.752 42.981 1.00 72.16 ATOM 170 CG2 VAL D 142 6.006 18.736 41.355 1.00 79.31 ATOM 171 N GLU D 143 4.474 23.042 42.275 1.00 71.83 ATOM 172 CA GLU D 143 3.935 24.089 43.128 1.00 66.64 ATOM 173 C GLU D 143 4.068 23.761 44.602 1.00 73.42 ATOM 174 O GLU D 143 3.700 22.670 45.031 1.00 75.16 ATOM 175 CB GLU D 143 2.461 24.309 42.833 1.00 60.79 ATOM 176 CG GLU D 143 1.821 25.238 43.834 1.00 53.69 ATOM 177 CD GLU D 143 0.343 25.441 43.603 1.00 59.85 ATOM 178 OE1 GLU D 143 -0.032 26.513 43.068 1.00 53.10 ATOM 179 OE2 GLU D 143 -0.441 24.531 43.962 1.00 58.25 ATOM 180 N GLY D 144 4.643 24.693 45.358 1.00 79.87 ATOM 181 CA GLY D 144 4.667 24.622 46.811 1.00 82.22 ATOM 182 C GLY D 144 5.607 23.625 47.471 1.00 85.75 ATOM 183 O GLY D 144 5.431 23.296 48.650 1.00 86.23 ATOM 184 N LYS D 145 6.608 23.146 46.738 1.00 87.92 ATOM 185 CA LYS D 145 7.558 22.190 47.312 1.00 93.04 ATOM 186 C LYS D 145 8.936 22.272 46.645 1.00 96.56 ATOM 187 O LYS D 145 9.045 22.676 45.487 1.00 98.81 ATOM 188 CB LYS D 145 6.994 20.765 47.234 1.00 92.54 ATOM 189 CG LYS D 145 7.007 20.001 48.562 1.00 88.67 ATOM 190 CD LYS D 145 5.604 19.520 48.942 1.00 82.37 ATOM 191 CE LYS D 145 5.626 18.494 50.068 1.00 75.36 ATOM 192 NZ LYS D 145 4.236 18.130 50.446 1.00 72.37 ATOM 193 N ASP D 146 9.984 21.899 47.380 1.00 95.31 ATOM 194 CA ASP D 146 11.346 21.981 46.856 1.00 95.61 ATOM 195 C ASP D 146 11.753 20.720 46.111 1.00 98.86 ATOM 196 O ASP D 146 12.575 19.940 46.594 1.00100.87 ATOM 197 CB ASP D 146 12.350 22.244 47.974 1.00 95.49 ATOM 198 CG ASP D 146 13.777 22.323 47.463 1.00 95.59 ATOM 199 OD1 ASP D 146 14.669 21.743 48.113 1.00 98.16 ATOM 200 OD2 ASP D 146 14.006 22.949 46.406 1.00 92.47 ATOM 201 N GLU D 151 10.456 18.512 50.539 1.00 77.44 ATOM 202 CA GLU D 151 9.851 19.059 51.750 1.00 73.36 ATOM 203 C GLU D 151 9.233 20.429 51.474 1.00 71.24 ATOM 204 O GLU D 151 9.792 21.238 50.723 1.00 60.95 ATOM 205 CB GLU D 151 10.882 19.136 52.873 1.00 69.15 ATOM 206 CG GLU D 151 12.165 19.845 52.483 1.00 70.86 ATOM 207 CD GLU D 151 13.298 19.577 53.460 1.00 73.39 ATOM 208 OE1 GLU D 151 13.724 18.411 53.576 1.00 66.85 ATOM 209 OE2 GLU D 151 13.767 20.531 54.116 1.00 78.99 ATOM 210 N ASP D 152 8.076 20.664 52.088 1.00 74.96 ATOM 211 CA ASP D 152 7.231 21.819 51.799 1.00 71.89 ATOM 212 C ASP D 152 7.997 23.139 51.692 1.00 70.97 ATOM 213 O ASP D 152 8.885 23.432 52.498 1.00 72.20 ATOM 214 CB ASP D 152 6.116 21.935 52.849 1.00 72.73 ATOM 215 CG ASP D 152 5.095 20.804 52.762 1.00 73.66 ATOM 216 OD1 ASP D 152 4.362 20.751 51.750 1.00 72.61 ATOM 217 OD2 ASP D 152 5.004 19.993 53.717 1.00 71.20 ATOM 218 N LEU D 153 7.667 23.920 50.670 1.00 69.21 ATOM 219 CA LEU D 153 8.223 25.252 50.542 1.00 63.58 ATOM 220 C LEU D 153 7.330 26.211 51.277 1.00 60.26 ATOM 221 O LEU D 153 6.226 25.860 51.668 1.00 59.17 ATOM 222 CB LEU D 153 8.323 25.676 49.082 1.00 65.06 ATOM 223 CG LEU D 153 9.529 25.140 48.317 1.00 68.32 ATOM 224 CD1 LEU D 153 9.690 25.885 47.015 1.00 66.64 ATOM 225 CD2 LEU D 153 10.782 25.241 49.159 1.00 69.06 ATOM 226 N VAL D 154 7.810 27.433 51.458 1.00 60.71 ATOM 227 CA VAL D 154 7.072 28.430 52.208 1.00 57.70 ATOM 228 C VAL D 154 7.256 29.824 51.625 1.00 48.49 ATOM 229 O VAL D 154 8.199 30.071 50.869 1.00 46.81 ATOM 230 CB VAL D 154 7.573 28.476 53.653 1.00 67.83 ATOM 231 CG1 VAL D 154 7.324 27.153 54.354 1.00 74.45 ATOM 232 CG2 VAL D 154 9.056 28.818 53.684 1.00 67.03 ATOM 233 N ILE D 155 6.353 30.735 51.983 1.00 44.48 ATOM 234 CA ILE D 155 6.545 32.156 51.710 1.00 42.38 ATOM 235 C ILE D 155 7.225 32.825 52.908 1.00 37.78 ATOM 236 O ILE D 155 6.766 32.671 54.036 1.00 35.41 ATOM 237 CB ILE D 155 5.205 32.881 51.502 1.00 36.73 ATOM 238 CG1 ILE D 155 4.449 32.313 50.330 1.00 37.16 ATOM 239 CG2 ILE D 155 5.435 34.332 51.229 1.00 36.70 ATOM 240 CD1 ILE D 155 3.200 33.068 50.078 1.00 53.33 ATOM 241 N ARG D 156 8.301 33.573 52.679 0.70 35.20 ATOM 242 CA ARG D 156 8.945 34.294 53.779 0.70 35.28 ATOM 243 C ARG D 156 8.069 35.450 54.276 0.70 33.63 ATOM 244 O ARG D 156 7.448 36.158 53.492 0.70 31.18 ATOM 245 CB ARG D 156 10.349 34.783 53.390 0.70 36.66 ATOM 246 CG ARG D 156 11.365 33.662 53.199 0.70 43.57 ATOM 247 CD ARG D 156 12.815 34.155 53.175 0.70 51.42 ATOM 248 NE ARG D 156 13.735 33.052 53.478 0.70 60.70 ATOM 249 CZ ARG D 156 14.828 32.749 52.776 0.70 55.86 ATOM 250 NH1 ARG D 156 15.165 33.475 51.721 0.70 49.68 ATOM 251 NH2 ARG D 156 15.590 31.717 53.133 0.70 52.79 TER