HEADER HYDROLASE 12-DEC-13 4NZQ TITLE Crystal structure of Ca2+-free prothrombin deletion mutant residues TITLE 2 146-167 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 4NZQ A 1 145 UNP P00734 THRB_HUMAN 44 188 DBREF 4NZQ A 168 579 UNP P00734 THRB_HUMAN 211 622 MODRES 4NZQ ASN A 100 ASN GLYCOSYLATION SITE MODRES 4NZQ ASN A 78 ASN GLYCOSYLATION SITE MODRES 4NZQ ASN A 351 ASN GLYCOSYLATION SITE SEQRES 1 A 30 SER THR ALA THR ASP VAL PHE TRP ALA LYS TYR THR ALA SEQRES 2 A 30 CYS GLU THR ALA ARG THR PRO ARG ASP LYS LEU ALA ALA SEQRES 3 A 30 CYS LEU GLU GLY ATOM 1 N SER A 34 10.886 -13.962 179.783 1.00 87.94 ATOM 2 CA SER A 34 10.347 -14.572 178.521 1.00 88.32 ATOM 3 C SER A 34 9.989 -13.494 177.491 1.00 88.14 ATOM 4 O SER A 34 9.791 -12.324 177.847 1.00 88.40 ATOM 5 CB SER A 34 9.128 -15.481 178.806 1.00 88.44 ATOM 6 OG SER A 34 7.961 -14.724 179.119 1.00 88.80 ATOM 7 N THR A 35 9.903 -13.891 176.221 1.00 87.41 ATOM 8 CA THR A 35 9.610 -12.945 175.145 1.00 86.86 ATOM 9 C THR A 35 8.176 -12.311 175.207 1.00 86.33 ATOM 10 O THR A 35 7.999 -11.133 174.855 1.00 86.02 ATOM 11 CB THR A 35 9.946 -13.558 173.741 1.00 87.09 ATOM 12 OG1 THR A 35 9.576 -14.939 173.711 1.00 87.13 ATOM 13 CG2 THR A 35 11.445 -13.447 173.433 1.00 86.95 ATOM 14 N ALA A 36 7.182 -13.084 175.676 1.00 85.34 ATOM 15 CA ALA A 36 5.776 -12.632 175.790 1.00 84.03 ATOM 16 C ALA A 36 5.607 -11.321 176.581 1.00 83.28 ATOM 17 O ALA A 36 4.753 -10.487 176.233 1.00 83.36 ATOM 18 CB ALA A 36 4.897 -13.738 176.385 1.00 84.01 ATOM 19 N THR A 37 6.417 -11.154 177.636 1.00 81.80 ATOM 20 CA THR A 37 6.505 -9.892 178.407 1.00 80.03 ATOM 21 C THR A 37 7.299 -8.810 177.659 1.00 78.55 ATOM 22 O THR A 37 7.117 -7.623 177.920 1.00 77.87 ATOM 23 CB THR A 37 7.122 -10.117 179.848 1.00 80.39 ATOM 24 OG1 THR A 37 6.455 -9.281 180.806 1.00 80.54 ATOM 25 CG2 THR A 37 8.649 -9.821 179.893 1.00 79.84 ATOM 26 N ASP A 38 8.187 -9.239 176.752 1.00 77.03 ATOM 27 CA ASP A 38 8.999 -8.330 175.918 1.00 75.46 ATOM 28 C ASP A 38 8.122 -7.795 174.811 1.00 73.87 ATOM 29 O ASP A 38 8.319 -6.681 174.346 1.00 73.29 ATOM 30 CB ASP A 38 10.208 -9.053 175.269 1.00 75.77 ATOM 31 CG ASP A 38 11.314 -9.428 176.275 1.00 75.75 ATOM 32 OD1 ASP A 38 11.787 -8.529 177.021 1.00 73.72 ATOM 33 OD2 ASP A 38 11.721 -10.625 176.287 1.00 74.73 ATOM 34 N VAL A 39 7.156 -8.609 174.398 1.00 72.31 ATOM 35 CA VAL A 39 6.294 -8.298 173.261 1.00 71.25 ATOM 36 C VAL A 39 5.356 -7.133 173.605 1.00 70.52 ATOM 37 O VAL A 39 5.214 -6.173 172.847 1.00 70.59 ATOM 38 CB VAL A 39 5.535 -9.581 172.759 1.00 71.27 ATOM 39 CG1 VAL A 39 4.047 -9.579 173.165 1.00 70.32 ATOM 40 CG2 VAL A 39 5.710 -9.744 171.253 1.00 70.57 ATOM 41 N PHE A 40 4.745 -7.244 174.779 1.00 69.45 ATOM 42 CA PHE A 40 3.943 -6.213 175.414 1.00 67.99 ATOM 43 C PHE A 40 4.689 -4.852 175.457 1.00 67.22 ATOM 44 O PHE A 40 4.140 -3.819 175.049 1.00 66.59 ATOM 45 CB PHE A 40 3.584 -6.751 176.810 1.00 67.72 ATOM 46 CG PHE A 40 2.794 -5.812 177.666 1.00 68.01 ATOM 47 CD1 PHE A 40 1.455 -5.553 177.396 1.00 68.83 ATOM 48 CD2 PHE A 40 3.378 -5.220 178.779 1.00 68.86 ATOM 49 CE1 PHE A 40 0.709 -4.690 178.197 1.00 68.35 ATOM 50 CE2 PHE A 40 2.653 -4.371 179.592 1.00 70.09 ATOM 51 CZ PHE A 40 1.303 -4.107 179.296 1.00 70.24 ATOM 52 N TRP A 41 5.939 -4.869 175.927 1.00 66.42 ATOM 53 CA TRP A 41 6.757 -3.656 176.033 1.00 66.06 ATOM 54 C TRP A 41 7.228 -3.212 174.655 1.00 64.89 ATOM 55 O TRP A 41 7.342 -2.005 174.384 1.00 65.20 ATOM 56 CB TRP A 41 7.940 -3.816 177.023 1.00 66.39 ATOM 57 CG TRP A 41 7.564 -3.502 178.478 1.00 69.41 ATOM 58 CD1 TRP A 41 6.612 -4.127 179.214 1.00 70.56 ATOM 59 CD2 TRP A 41 8.137 -2.485 179.347 1.00 74.38 ATOM 60 NE1 TRP A 41 6.537 -3.576 180.473 1.00 74.00 ATOM 61 CE2 TRP A 41 7.459 -2.569 180.588 1.00 75.12 ATOM 62 CE3 TRP A 41 9.160 -1.512 179.197 1.00 77.49 ATOM 63 CZ2 TRP A 41 7.773 -1.722 181.697 1.00 76.59 ATOM 64 CZ3 TRP A 41 9.478 -0.655 180.315 1.00 77.37 ATOM 65 CH2 TRP A 41 8.781 -0.780 181.541 1.00 77.12 ATOM 66 N ALA A 42 7.468 -4.179 173.771 1.00 63.18 ATOM 67 CA ALA A 42 7.915 -3.853 172.431 1.00 60.95 ATOM 68 C ALA A 42 6.835 -3.020 171.778 1.00 59.72 ATOM 69 O ALA A 42 7.134 -1.956 171.277 1.00 59.26 ATOM 70 CB ALA A 42 8.203 -5.085 171.646 1.00 60.89 ATOM 71 N LYS A 43 5.584 -3.480 171.836 1.00 58.51 ATOM 72 CA LYS A 43 4.442 -2.706 171.336 1.00 58.20 ATOM 73 C LYS A 43 4.429 -1.296 171.931 1.00 58.01 ATOM 74 O LYS A 43 4.158 -0.302 171.245 1.00 58.23 ATOM 75 CB LYS A 43 3.105 -3.379 171.673 1.00 57.73 ATOM 76 CG LYS A 43 2.874 -4.731 171.047 1.00 59.60 ATOM 77 CD LYS A 43 1.454 -5.240 171.342 1.00 62.25 ATOM 78 CE LYS A 43 1.230 -6.671 170.811 1.00 62.93 ATOM 79 NZ LYS A 43 0.817 -6.676 169.369 1.00 64.37 ATOM 80 N TYR A 44 4.668 -1.257 173.288 1.00 57.50 ATOM 81 CA TYR A 44 4.563 0.019 173.944 1.00 56.44 ATOM 82 C TYR A 44 5.622 0.953 173.353 1.00 55.25 ATOM 83 O TYR A 44 5.275 2.034 172.895 1.00 54.75 ATOM 84 CB TYR A 44 4.615 -0.159 175.479 1.00 56.84 ATOM 85 CG TYR A 44 5.175 1.024 176.211 1.00 59.12 ATOM 86 CD1 TYR A 44 4.357 2.087 176.602 1.00 60.49 ATOM 87 CD2 TYR A 44 6.553 1.092 176.491 1.00 62.28 ATOM 88 CE1 TYR A 44 4.907 3.197 177.264 1.00 63.85 ATOM 89 CE2 TYR A 44 7.117 2.184 177.138 1.00 63.54 ATOM 90 CZ TYR A 44 6.294 3.232 177.526 1.00 65.56 ATOM 91 OH TYR A 44 6.877 4.310 178.176 1.00 69.40 ATOM 92 N THR A 45 6.889 0.588 173.413 1.00 53.99 ATOM 93 CA THR A 45 7.972 1.436 172.913 1.00 53.80 ATOM 94 C THR A 45 7.822 1.832 171.447 1.00 53.65 ATOM 95 O THR A 45 8.250 2.906 171.032 1.00 54.10 ATOM 96 CB THR A 45 9.315 0.745 173.017 1.00 53.95 ATOM 97 OG1 THR A 45 9.102 -0.671 173.044 1.00 54.75 ATOM 98 CG2 THR A 45 10.066 1.202 174.269 1.00 53.93 ATOM 99 N ALA A 46 7.229 0.957 170.655 1.00 53.10 ATOM 100 CA ALA A 46 7.029 1.238 169.267 1.00 52.22 ATOM 101 C ALA A 46 5.949 2.283 169.084 1.00 52.32 ATOM 102 O ALA A 46 6.028 3.066 168.145 1.00 52.64 ATOM 103 CB ALA A 46 6.673 -0.016 168.543 1.00 52.54 ATOM 104 N CYS A 47 4.947 2.310 169.966 1.00 52.01 ATOM 105 CA CYS A 47 3.880 3.303 169.869 1.00 51.93 ATOM 106 C CYS A 47 4.141 4.570 170.644 1.00 52.07 ATOM 107 O CYS A 47 3.240 5.381 170.810 1.00 50.84 ATOM 108 CB CYS A 47 2.571 2.747 170.357 1.00 51.93 ATOM 109 SG CYS A 47 1.700 1.773 169.179 1.00 53.77 ATOM 110 N GLU A 48 5.377 4.762 171.080 1.00 53.45 ATOM 111 CA GLU A 48 5.733 5.921 171.908 1.00 55.81 ATOM 112 C GLU A 48 5.303 7.302 171.390 1.00 56.43 ATOM 113 O GLU A 48 5.084 8.211 172.167 1.00 56.76 ATOM 114 CB GLU A 48 7.228 5.933 172.148 1.00 56.13 ATOM 115 CG GLU A 48 7.642 6.498 173.493 1.00 59.64 ATOM 116 CD GLU A 48 9.162 6.479 173.675 1.00 64.18 ATOM 117 OE1 GLU A 48 9.876 5.978 172.754 1.00 64.77 ATOM 118 OE2 GLU A 48 9.637 6.962 174.736 1.00 65.04 ATOM 119 N THR A 49 5.189 7.475 170.085 1.00 57.77 ATOM 120 CA THR A 49 4.945 8.806 169.560 1.00 58.63 ATOM 121 C THR A 49 3.451 9.130 169.420 1.00 60.66 ATOM 122 O THR A 49 3.110 10.212 168.959 1.00 60.74 ATOM 123 CB THR A 49 5.770 9.097 168.257 1.00 58.03 ATOM 124 OG1 THR A 49 5.294 8.315 167.168 1.00 55.56 ATOM 125 CG2 THR A 49 7.237 8.767 168.455 1.00 58.08 ATOM 126 N ALA A 50 2.565 8.215 169.833 1.00 62.96 ATOM 127 CA ALA A 50 1.099 8.455 169.761 1.00 65.73 ATOM 128 C ALA A 50 0.451 8.704 171.143 1.00 67.68 ATOM 129 O ALA A 50 0.388 7.801 171.971 1.00 68.01 ATOM 130 CB ALA A 50 0.404 7.305 169.041 1.00 65.56 ATOM 131 N ARG A 51 -0.031 9.922 171.399 1.00 70.37 ATOM 132 CA ARG A 51 -0.273 10.348 172.802 1.00 72.48 ATOM 133 C ARG A 51 -1.636 10.979 173.157 1.00 73.21 ATOM 134 O ARG A 51 -2.430 10.358 173.898 1.00 73.12 ATOM 135 CB ARG A 51 0.883 11.242 173.303 1.00 72.77 ATOM 136 CG ARG A 51 0.890 11.453 174.817 1.00 75.68 ATOM 137 CD ARG A 51 2.240 11.990 175.360 1.00 80.66 ATOM 138 NE ARG A 51 2.048 12.748 176.604 1.00 83.79 ATOM 139 CZ ARG A 51 1.618 14.017 176.654 1.00 86.59 ATOM 140 NH1 ARG A 51 1.337 14.686 175.529 1.00 86.82 ATOM 141 NH2 ARG A 51 1.457 14.629 177.827 1.00 86.05 ATOM 142 N THR A 52 -1.880 12.198 172.636 1.00 74.26 ATOM 143 CA THR A 52 -2.926 13.137 173.166 1.00 74.84 ATOM 144 C THR A 52 -4.384 12.571 173.171 1.00 75.17 ATOM 145 O THR A 52 -4.999 12.431 174.277 1.00 75.16 ATOM 146 CB THR A 52 -2.764 14.641 172.637 1.00 74.85 ATOM 147 OG1 THR A 52 -3.850 15.475 173.096 1.00 73.80 ATOM 148 CG2 THR A 52 -2.599 14.701 171.107 1.00 74.47 ATOM 149 N PRO A 53 -4.925 12.220 171.965 1.00 74.81 ATOM 150 CA PRO A 53 -5.904 11.138 172.060 1.00 73.98 ATOM 151 C PRO A 53 -5.129 9.832 172.315 1.00 72.87 ATOM 152 O PRO A 53 -4.086 9.580 171.663 1.00 72.69 ATOM 153 CB PRO A 53 -6.591 11.148 170.686 1.00 74.02 ATOM 154 CG PRO A 53 -6.286 12.516 170.129 1.00 74.70 ATOM 155 CD PRO A 53 -4.907 12.806 170.606 1.00 75.01 ATOM 156 N ARG A 54 -5.596 9.093 173.334 1.00 71.14 ATOM 157 CA ARG A 54 -5.215 7.705 173.604 1.00 68.79 ATOM 158 C ARG A 54 -6.276 6.783 173.007 1.00 67.15 ATOM 159 O ARG A 54 -6.266 5.589 173.231 1.00 66.58 ATOM 160 CB ARG A 54 -4.994 7.455 175.110 1.00 68.89 ATOM 161 CG ARG A 54 -3.636 7.974 175.611 1.00 68.44 ATOM 162 CD ARG A 54 -3.118 7.130 176.753 1.00 68.75 ATOM 163 NE ARG A 54 -3.350 7.784 178.033 1.00 70.00 ATOM 164 CZ ARG A 54 -2.397 8.323 178.798 1.00 70.26 ATOM 165 NH1 ARG A 54 -1.127 8.265 178.428 1.00 70.83 ATOM 166 NH2 ARG A 54 -2.714 8.921 179.942 1.00 69.62 ATOM 167 N ASP A 55 -7.206 7.375 172.262 1.00 65.61 ATOM 168 CA ASP A 55 -7.948 6.652 171.231 1.00 63.95 ATOM 169 C ASP A 55 -7.073 6.615 169.977 1.00 61.76 ATOM 170 O ASP A 55 -7.330 5.842 169.057 1.00 61.87 ATOM 171 CB ASP A 55 -9.360 7.224 170.972 1.00 64.33 ATOM 172 CG ASP A 55 -9.345 8.631 170.387 1.00 66.07 ATOM 173 OD1 ASP A 55 -9.412 9.608 171.182 1.00 69.50 ATOM 174 OD2 ASP A 55 -9.309 8.761 169.141 1.00 65.79 ATOM 175 N LYS A 56 -6.027 7.443 169.976 1.00 59.06 ATOM 176 CA LYS A 56 -4.940 7.361 168.996 1.00 56.54 ATOM 177 C LYS A 56 -3.841 6.369 169.405 1.00 55.01 ATOM 178 O LYS A 56 -3.404 5.558 168.579 1.00 54.64 ATOM 179 CB LYS A 56 -4.342 8.729 168.719 1.00 56.23 ATOM 180 CG LYS A 56 -3.036 8.649 167.983 1.00 57.11 ATOM 181 CD LYS A 56 -2.640 9.975 167.311 1.00 59.30 ATOM 182 CE LYS A 56 -1.185 9.936 166.789 1.00 58.29 ATOM 183 NZ LYS A 56 -0.546 11.281 166.642 1.00 58.41 ATOM 184 N LEU A 57 -3.402 6.422 170.669 1.00 53.17 ATOM 185 CA LEU A 57 -2.510 5.388 171.208 1.00 51.01 ATOM 186 C LEU A 57 -3.187 4.035 171.205 1.00 50.20 ATOM 187 O LEU A 57 -2.521 3.041 170.970 1.00 49.73 ATOM 188 CB LEU A 57 -2.034 5.715 172.595 1.00 50.45 ATOM 189 CG LEU A 57 -1.158 4.650 173.237 1.00 50.10 ATOM 190 CD1 LEU A 57 0.313 4.976 173.136 1.00 48.89 ATOM 191 CD2 LEU A 57 -1.558 4.516 174.689 1.00 48.97 ATOM 192 N ALA A 58 -4.505 4.005 171.444 1.00 49.72 ATOM 193 CA ALA A 58 -5.319 2.782 171.280 1.00 49.12 ATOM 194 C ALA A 58 -5.139 2.240 169.872 1.00 49.13 ATOM 195 O ALA A 58 -4.646 1.115 169.644 1.00 48.09 ATOM 196 CB ALA A 58 -6.789 3.070 171.520 1.00 48.64 ATOM 197 N ALA A 59 -5.536 3.080 168.922 1.00 49.40 ATOM 198 CA ALA A 59 -5.493 2.715 167.514 1.00 49.35 ATOM 199 C ALA A 59 -4.067 2.372 167.057 1.00 48.91 ATOM 200 O ALA A 59 -3.885 1.575 166.151 1.00 48.90 ATOM 201 CB ALA A 59 -6.119 3.806 166.658 1.00 49.46 ATOM 202 N CYS A 60 -3.065 2.941 167.706 1.00 48.24 ATOM 203 CA CYS A 60 -1.703 2.517 167.438 1.00 48.34 ATOM 204 C CYS A 60 -1.461 1.078 167.904 1.00 48.01 ATOM 205 O CYS A 60 -1.095 0.220 167.113 1.00 47.96 ATOM 206 CB CYS A 60 -0.717 3.464 168.108 1.00 48.42 ATOM 207 SG CYS A 60 0.997 3.103 167.758 1.00 51.25 ATOM 208 N LEU A 61 -1.679 0.818 169.193 1.00 47.86 ATOM 209 CA LEU A 61 -1.308 -0.451 169.807 1.00 46.96 ATOM 210 C LEU A 61 -1.998 -1.652 169.192 1.00 47.26 ATOM 211 O LEU A 61 -1.388 -2.689 169.083 1.00 47.50 ATOM 212 CB LEU A 61 -1.575 -0.427 171.302 1.00 46.77 ATOM 213 CG LEU A 61 -0.806 0.519 172.226 1.00 45.59 ATOM 214 CD1 LEU A 61 -1.646 0.739 173.467 1.00 41.59 ATOM 215 CD2 LEU A 61 0.621 0.024 172.562 1.00 44.12 ATOM 216 N GLU A 62 -3.270 -1.527 168.835 1.00 47.84 ATOM 217 CA GLU A 62 -3.954 -2.513 168.010 1.00 48.89 ATOM 218 C GLU A 62 -3.470 -2.161 166.618 1.00 49.72 ATOM 219 O GLU A 62 -3.880 -1.127 166.057 1.00 51.03 ATOM 220 CB GLU A 62 -5.446 -2.268 168.105 1.00 49.14 ATOM 221 CG GLU A 62 -6.314 -3.068 167.145 1.00 51.61 ATOM 222 CD GLU A 62 -7.756 -2.502 167.033 1.00 54.52 ATOM 223 OE1 GLU A 62 -7.911 -1.287 166.724 1.00 53.63 ATOM 224 OE2 GLU A 62 -8.728 -3.283 167.239 1.00 55.43 ATOM 225 N GLY A 63 -2.598 -2.986 166.048 1.00 49.37 ATOM 226 CA GLY A 63 -1.710 -2.502 164.997 1.00 49.12 ATOM 227 C GLY A 63 -2.266 -2.089 163.638 1.00 49.22 ATOM 228 O GLY A 63 -1.517 -2.060 162.670 1.00 49.67 TER