HEADER APOPTOSIS/IMMUNE SYSTEM 09-JAN-14 4OD2 TITLE Crystal structure of the Fab fragment of an anti-DR5 antibody bound TITLE 2 to DR5 COMPND MOL_ID: 3; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 10B; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.20 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU S 74 REMARK 465 GLU S 75 REMARK 465 ASP S 76 REMARK 465 SER S 77 DBREF 4OD2 S 20 130 UNP O14763 TR10B_HUMAN 73 183 SEQRES 1 S 36 ARG CYS THR ARG CYS ASP SER GLY GLU VAL GLU LEU SER SEQRES 2 S 36 PRO CYS THR THR THR ARG ASN THR VAL CYS GLN CYS GLU SEQRES 3 S 36 GLU GLY THR PHE ARG GLU GLU ASP SER PRO ATOM 1 N ARG S 62 19.188 93.034 16.806 1.00 60.40 ATOM 2 CA ARG S 62 18.057 93.912 16.526 1.00 60.49 ATOM 3 C ARG S 62 17.182 94.057 17.753 1.00 58.54 ATOM 4 O ARG S 62 17.094 93.144 18.568 1.00 58.01 ATOM 5 CB ARG S 62 17.236 93.399 15.347 1.00 63.25 ATOM 6 CG ARG S 62 17.864 93.666 13.996 1.00 67.15 ATOM 7 CD ARG S 62 17.643 92.465 13.103 1.00 71.69 ATOM 8 NE ARG S 62 17.529 92.834 11.693 1.00 77.60 ATOM 9 CZ ARG S 62 16.919 92.092 10.763 1.00 81.43 ATOM 10 NH1 ARG S 62 16.358 90.919 11.082 1.00 82.66 ATOM 11 NH2 ARG S 62 16.863 92.531 9.508 1.00 84.75 ATOM 12 N CYS S 63 16.549 95.218 17.882 1.00 57.82 ATOM 13 CA CYS S 63 15.671 95.491 19.000 1.00 56.49 ATOM 14 C CYS S 63 14.452 94.592 18.880 1.00 55.87 ATOM 15 O CYS S 63 14.004 94.280 17.774 1.00 56.31 ATOM 16 CB CYS S 63 15.240 96.962 19.017 1.00 57.28 ATOM 17 SG CYS S 63 16.536 98.205 19.273 1.00 58.11 ATOM 18 N THR S 64 13.953 94.155 20.031 1.00 54.90 ATOM 19 CA THR S 64 12.654 93.494 20.162 1.00 54.42 ATOM 20 C THR S 64 11.535 94.476 19.811 1.00 54.50 ATOM 21 O THR S 64 11.611 95.669 20.130 1.00 54.87 ATOM 22 CB THR S 64 12.481 92.970 21.605 1.00 54.44 ATOM 23 OG1 THR S 64 13.140 91.704 21.727 1.00 55.01 ATOM 24 CG2 THR S 64 11.016 92.819 22.004 1.00 54.48 ATOM 25 N ARG S 65 10.503 93.986 19.141 1.00 54.11 ATOM 26 CA ARG S 65 9.382 94.835 18.774 1.00 54.46 ATOM 27 C ARG S 65 8.217 94.390 19.664 1.00 53.99 ATOM 28 O ARG S 65 8.099 93.205 19.976 1.00 53.30 ATOM 29 CB ARG S 65 9.082 94.644 17.284 1.00 55.62 ATOM 30 CG ARG S 65 9.234 95.885 16.427 1.00 56.95 ATOM 31 CD ARG S 65 9.034 95.561 14.950 1.00 58.95 ATOM 32 NE ARG S 65 7.942 96.370 14.364 1.00 61.15 ATOM 33 CZ ARG S 65 7.262 96.074 13.246 1.00 63.56 ATOM 34 NH1 ARG S 65 7.538 94.983 12.548 1.00 64.33 ATOM 35 NH2 ARG S 65 6.284 96.864 12.828 1.00 65.87 ATOM 36 N CYS S 66 7.368 95.312 20.101 1.00 54.41 ATOM 37 CA CYS S 66 6.289 94.908 20.996 1.00 54.50 ATOM 38 C CYS S 66 5.109 94.238 20.280 1.00 55.31 ATOM 39 O CYS S 66 4.735 94.652 19.184 1.00 56.34 ATOM 40 CB CYS S 66 5.823 96.078 21.859 1.00 55.20 ATOM 41 SG CYS S 66 6.961 96.544 23.192 1.00 55.32 ATOM 42 N ASP S 67 4.556 93.189 20.903 1.00 55.21 ATOM 43 CA ASP S 67 3.320 92.518 20.464 1.00 56.29 ATOM 44 C ASP S 67 2.082 93.299 20.874 1.00 57.09 ATOM 45 O ASP S 67 2.193 94.345 21.504 1.00 56.99 ATOM 46 CB ASP S 67 3.209 91.149 21.104 1.00 56.27 ATOM 47 CG ASP S 67 3.896 90.076 20.319 1.00 56.81 ATOM 48 OD1 ASP S 67 3.918 90.121 19.051 1.00 57.77 ATOM 49 OD2 ASP S 67 4.389 89.155 21.000 1.00 56.72 ATOM 50 N SER S 68 0.901 92.778 20.553 1.00 58.15 ATOM 51 CA SER S 68 -0.301 93.531 20.804 1.00 59.41 ATOM 52 C SER S 68 -0.448 93.757 22.273 1.00 58.89 ATOM 53 O SER S 68 -0.617 94.881 22.717 1.00 59.73 ATOM 54 CB SER S 68 -1.554 92.848 20.263 1.00 61.13 ATOM 55 OG SER S 68 -2.078 91.895 21.179 1.00 60.82 ATOM 56 N GLY S 69 -0.363 92.698 23.050 1.00 58.32 ATOM 57 CA GLY S 69 -0.765 92.805 24.445 1.00 58.96 ATOM 58 C GLY S 69 0.050 93.770 25.265 1.00 58.84 ATOM 59 O GLY S 69 -0.157 93.887 26.462 1.00 59.98 ATOM 60 N GLU S 70 0.955 94.480 24.611 1.00 58.43 ATOM 61 CA GLU S 70 2.103 95.045 25.288 1.00 58.47 ATOM 62 C GLU S 70 2.322 96.539 25.023 1.00 59.38 ATOM 63 O GLU S 70 1.791 97.093 24.056 1.00 60.21 ATOM 64 CB GLU S 70 3.341 94.226 24.899 1.00 57.43 ATOM 65 CG GLU S 70 3.134 92.713 25.031 1.00 57.71 ATOM 66 CD GLU S 70 4.291 91.871 24.498 1.00 57.06 ATOM 67 OE1 GLU S 70 4.528 91.827 23.275 1.00 56.57 ATOM 68 OE2 GLU S 70 4.964 91.217 25.312 1.00 57.85 ATOM 69 N VAL S 71 3.073 97.190 25.913 1.00 59.96 ATOM 70 CA VAL S 71 3.559 98.562 25.694 1.00 61.07 ATOM 71 C VAL S 71 5.061 98.661 25.878 1.00 60.54 ATOM 72 O VAL S 71 5.699 97.748 26.397 1.00 59.70 ATOM 73 CB VAL S 71 2.898 99.600 26.604 1.00 63.45 ATOM 74 CG1 VAL S 71 1.746 100.251 25.865 1.00 65.01 ATOM 75 CG2 VAL S 71 2.457 98.979 27.929 1.00 64.04 ATOM 76 N GLU S 72 5.624 99.780 25.452 1.00 61.51 ATOM 77 CA GLU S 72 7.065 99.920 25.408 1.00 61.04 ATOM 78 C GLU S 72 7.524 100.637 26.670 1.00 63.10 ATOM 79 O GLU S 72 7.601 101.870 26.705 1.00 65.44 ATOM 80 CB GLU S 72 7.452 100.686 24.146 1.00 61.34 ATOM 81 CG GLU S 72 8.936 100.773 23.877 1.00 60.78 ATOM 82 CD GLU S 72 9.261 101.843 22.856 1.00 62.40 ATOM 83 OE1 GLU S 72 9.797 101.471 21.791 1.00 61.24 ATOM 84 OE2 GLU S 72 8.976 103.047 23.108 1.00 64.85 ATOM 85 N LEU S 73 7.806 99.870 27.716 1.00 62.97 ATOM 86 CA LEU S 73 8.169 100.461 28.989 1.00 65.63 ATOM 87 C LEU S 73 9.462 101.262 28.835 1.00 66.67 ATOM 88 O LEU S 73 9.490 102.439 29.149 1.00 69.30 ATOM 89 CB LEU S 73 8.303 99.386 30.060 1.00 65.80 ATOM 90 CG LEU S 73 7.832 99.690 31.482 1.00 68.96 ATOM 91 CD1 LEU S 73 8.126 98.470 32.329 1.00 69.40 ATOM 92 CD2 LEU S 73 8.519 100.907 32.089 1.00 72.26 ATOM 93 N SER S 74 10.522 100.628 28.342 1.00 65.21 ATOM 94 CA SER S 74 11.757 101.345 28.004 1.00 66.19 ATOM 95 C SER S 74 12.016 101.160 26.522 1.00 64.13 ATOM 96 O SER S 74 12.056 100.020 26.049 1.00 62.04 ATOM 97 CB SER S 74 12.970 100.793 28.755 1.00 66.97 ATOM 98 OG SER S 74 12.591 99.922 29.801 1.00 67.58 ATOM 99 N PRO S 75 12.210 102.266 25.783 1.00 65.22 ATOM 100 CA PRO S 75 12.521 102.118 24.370 1.00 63.82 ATOM 101 C PRO S 75 13.898 101.493 24.237 1.00 62.75 ATOM 102 O PRO S 75 14.694 101.533 25.174 1.00 63.66 ATOM 103 CB PRO S 75 12.530 103.555 23.863 1.00 66.25 ATOM 104 CG PRO S 75 12.933 104.350 25.050 1.00 68.78 ATOM 105 CD PRO S 75 12.314 103.663 26.230 1.00 68.40 ATOM 106 N CYS S 76 14.167 100.898 23.088 1.00 61.44 ATOM 107 CA CYS S 76 15.416 100.186 22.891 1.00 60.67 ATOM 108 C CYS S 76 16.529 101.162 22.580 1.00 62.30 ATOM 109 O CYS S 76 16.472 101.870 21.565 1.00 63.53 ATOM 110 CB CYS S 76 15.256 99.210 21.738 1.00 59.16 ATOM 111 SG CYS S 76 16.722 98.282 21.275 1.00 58.23 ATOM 112 N THR S 77 17.530 101.200 23.454 1.00 63.18 ATOM 113 CA THR S 77 18.719 102.017 23.245 1.00 64.72 ATOM 114 C THR S 77 19.787 101.175 22.571 1.00 63.42 ATOM 115 O THR S 77 19.482 100.135 21.994 1.00 61.71 ATOM 116 CB THR S 77 19.252 102.606 24.563 1.00 67.16 ATOM 117 OG1 THR S 77 19.572 101.556 25.482 1.00 66.56 ATOM 118 CG2 THR S 77 18.214 103.507 25.190 1.00 69.58 ATOM 119 N THR S 78 21.036 101.625 22.636 1.00 64.93 ATOM 120 CA THR S 78 22.149 100.904 22.022 1.00 64.18 ATOM 121 C THR S 78 22.747 99.908 22.984 1.00 64.14 ATOM 122 O THR S 78 23.212 98.840 22.579 1.00 63.33 ATOM 123 CB THR S 78 23.264 101.854 21.621 1.00 65.85 ATOM 124 OG1 THR S 78 23.440 102.806 22.676 1.00 68.17 ATOM 125 CG2 THR S 78 22.901 102.561 20.322 1.00 66.74 ATOM 126 N THR S 79 22.756 100.272 24.262 1.00 65.98 ATOM 127 CA THR S 79 23.231 99.372 25.306 1.00 66.66 ATOM 128 C THR S 79 22.130 98.459 25.827 1.00 65.70 ATOM 129 O THR S 79 22.427 97.449 26.460 1.00 66.37 ATOM 130 CB THR S 79 23.861 100.127 26.493 1.00 69.69 ATOM 131 OG1 THR S 79 22.865 100.907 27.160 1.00 70.98 ATOM 132 CG2 THR S 79 24.981 101.026 26.016 1.00 71.01 ATOM 133 N ARG S 80 20.873 98.812 25.548 1.00 64.89 ATOM 134 CA ARG S 80 19.710 98.110 26.112 1.00 64.40 ATOM 135 C ARG S 80 18.619 97.752 25.090 1.00 61.98 ATOM 136 O ARG S 80 18.202 98.578 24.269 1.00 61.67 ATOM 137 CB ARG S 80 19.113 98.922 27.270 1.00 66.82 ATOM 138 CG ARG S 80 17.947 98.253 27.979 1.00 67.10 ATOM 139 CD ARG S 80 17.243 99.200 28.941 1.00 70.13 ATOM 140 NE ARG S 80 16.375 100.189 28.280 1.00 69.94 ATOM 141 CZ ARG S 80 16.741 101.434 27.937 1.00 71.59 ATOM 142 NH1 ARG S 80 17.984 101.881 28.159 1.00 72.80 ATOM 143 NH2 ARG S 80 15.857 102.245 27.356 1.00 71.39 ATOM 144 N ASN S 81 18.154 96.511 25.155 1.00 60.75 ATOM 145 CA ASN S 81 17.026 96.089 24.345 1.00 58.91 ATOM 146 C ASN S 81 15.718 96.643 24.899 1.00 59.20 ATOM 147 O ASN S 81 15.665 97.114 26.048 1.00 60.92 ATOM 148 CB ASN S 81 16.953 94.568 24.287 1.00 58.56 ATOM 149 CG ASN S 81 16.111 94.071 23.128 1.00 57.45 ATOM 150 OD1 ASN S 81 15.679 92.917 23.101 1.00 57.61 ATOM 151 ND2 ASN S 81 15.878 94.942 22.157 1.00 57.05 ATOM 152 N THR S 82 14.664 96.567 24.088 1.00 57.62 ATOM 153 CA THR S 82 13.363 97.136 24.432 1.00 57.61 ATOM 154 C THR S 82 12.597 96.314 25.457 1.00 57.54 ATOM 155 O THR S 82 12.537 95.092 25.355 1.00 56.87 ATOM 156 CB THR S 82 12.513 97.401 23.168 1.00 57.02 ATOM 157 OG1 THR S 82 11.177 96.922 23.354 1.00 56.99 ATOM 158 CG2 THR S 82 13.098 96.700 22.002 1.00 56.02 ATOM 159 N VAL S 83 12.024 96.995 26.446 1.00 58.55 ATOM 160 CA VAL S 83 11.154 96.339 27.414 1.00 59.15 ATOM 161 C VAL S 83 9.696 96.546 27.034 1.00 58.61 ATOM 162 O VAL S 83 9.182 97.665 27.104 1.00 59.65 ATOM 163 CB VAL S 83 11.371 96.831 28.865 1.00 61.78 ATOM 164 CG1 VAL S 83 10.494 96.039 29.824 1.00 62.76 ATOM 165 CG2 VAL S 83 12.828 96.696 29.281 1.00 62.88 ATOM 166 N CYS S 84 9.048 95.458 26.623 1.00 57.32 ATOM 167 CA CYS S 84 7.610 95.437 26.386 1.00 57.24 ATOM 168 C CYS S 84 6.922 94.967 27.639 1.00 58.65 ATOM 169 O CYS S 84 7.244 93.902 28.147 1.00 58.92 ATOM 170 CB CYS S 84 7.253 94.452 25.278 1.00 55.72 ATOM 171 SG CYS S 84 7.933 94.843 23.669 1.00 54.37 ATOM 172 N GLN S 85 5.958 95.740 28.120 1.00 60.35 ATOM 173 CA GLN S 85 5.230 95.388 29.332 1.00 62.56 ATOM 174 C GLN S 85 3.785 95.028 29.013 1.00 62.72 ATOM 175 O GLN S 85 3.097 95.805 28.342 1.00 62.44 ATOM 176 CB GLN S 85 5.281 96.537 30.338 1.00 64.99 ATOM 177 CG GLN S 85 4.349 96.344 31.514 1.00 67.68 ATOM 178 CD GLN S 85 4.442 97.463 32.519 1.00 70.57 ATOM 179 OE1 GLN S 85 5.301 97.443 33.397 1.00 72.57 ATOM 180 NE2 GLN S 85 3.544 98.442 32.412 1.00 71.61 ATOM 181 N CYS S 86 3.332 93.866 29.504 1.00 63.54 ATOM 182 CA CYS S 86 1.951 93.426 29.310 1.00 64.00 ATOM 183 C CYS S 86 0.965 94.470 29.801 1.00 65.27 ATOM 184 O CYS S 86 1.144 95.078 30.870 1.00 66.97 ATOM 185 CB CYS S 86 1.674 92.099 30.006 1.00 65.78 ATOM 186 SG CYS S 86 2.314 90.635 29.168 1.00 66.23 ATOM 187 N GLU S 87 -0.077 94.660 29.000 1.00 64.81 ATOM 188 CA GLU S 87 -1.098 95.674 29.236 1.00 66.42 ATOM 189 C GLU S 87 -1.969 95.381 30.465 1.00 68.48 ATOM 190 O GLU S 87 -1.863 94.340 31.118 1.00 68.57 ATOM 191 CB GLU S 87 -1.953 95.848 27.970 1.00 65.87 ATOM 192 CG GLU S 87 -2.837 97.086 27.912 1.00 67.88 ATOM 193 CD GLU S 87 -4.315 96.798 28.177 1.00 69.21 ATOM 194 OE1 GLU S 87 -4.761 95.627 28.160 1.00 68.40 ATOM 195 OE2 GLU S 87 -5.049 97.774 28.399 1.00 71.33 ATOM 196 N GLU S 88 -2.808 96.355 30.768 1.00 70.65 ATOM 197 CA GLU S 88 -3.763 96.335 31.857 1.00 73.35 ATOM 198 C GLU S 88 -4.667 95.095 31.786 1.00 72.98 ATOM 199 O GLU S 88 -5.483 94.951 30.866 1.00 72.11 ATOM 200 CB GLU S 88 -4.561 97.639 31.752 1.00 75.34 ATOM 201 CG GLU S 88 -5.674 97.889 32.747 1.00 78.33 ATOM 202 CD GLU S 88 -6.359 99.215 32.458 1.00 80.49 ATOM 203 OE1 GLU S 88 -5.649 100.181 32.068 1.00 80.94 ATOM 204 OE2 GLU S 88 -7.600 99.291 32.611 1.00 81.86 ATOM 205 N GLY S 89 -4.481 94.195 32.754 1.00 74.23 ATOM 206 CA GLY S 89 -5.318 92.995 32.899 1.00 74.72 ATOM 207 C GLY S 89 -4.664 91.681 32.503 1.00 73.66 ATOM 208 O GLY S 89 -5.343 90.667 32.356 1.00 73.95 ATOM 209 N THR S 90 -3.346 91.704 32.323 1.00 72.38 ATOM 210 CA THR S 90 -2.601 90.551 31.819 1.00 71.26 ATOM 211 C THR S 90 -1.227 90.494 32.482 1.00 71.90 ATOM 212 O THR S 90 -0.924 91.318 33.351 1.00 73.29 ATOM 213 CB THR S 90 -2.432 90.576 30.270 1.00 68.80 ATOM 214 OG1 THR S 90 -1.594 91.668 29.877 1.00 67.50 ATOM 215 CG2 THR S 90 -3.774 90.684 29.544 1.00 68.50 ATOM 216 N PHE S 91 -0.406 89.520 32.071 1.00 71.41 ATOM 217 CA PHE S 91 0.938 89.303 32.633 1.00 72.19 ATOM 218 C PHE S 91 1.802 88.355 31.809 1.00 71.05 ATOM 219 O PHE S 91 1.289 87.523 31.046 1.00 70.27 ATOM 220 CB PHE S 91 0.844 88.725 34.049 1.00 76.05 ATOM 221 CG PHE S 91 0.420 87.279 34.091 1.00 77.20 ATOM 222 CD1 PHE S 91 -0.935 86.935 34.116 1.00 77.87 ATOM 223 CD2 PHE S 91 1.373 86.260 34.110 1.00 78.18 ATOM 224 CE1 PHE S 91 -1.326 85.606 34.160 1.00 79.58 ATOM 225 CE2 PHE S 91 0.984 84.930 34.148 1.00 80.05 ATOM 226 CZ PHE S 91 -0.366 84.603 34.176 1.00 80.92 ATOM 227 N ARG S 92 3.115 88.473 32.010 1.00 71.20 ATOM 228 CA ARG S 92 4.091 87.508 31.500 1.00 71.18 ATOM 229 C ARG S 92 4.910 86.872 32.618 1.00 74.14 ATOM 230 O ARG S 92 5.859 87.467 33.120 1.00 74.70 ATOM 231 CB ARG S 92 5.005 88.138 30.443 1.00 68.70 ATOM 232 CG ARG S 92 4.868 87.477 29.076 1.00 67.55 ATOM 233 CD ARG S 92 4.812 88.481 27.928 1.00 65.35 ATOM 234 NE ARG S 92 6.110 89.106 27.646 1.00 64.52 ATOM 235 CZ ARG S 92 6.429 90.379 27.911 1.00 63.84 ATOM 236 NH1 ARG S 92 5.552 91.219 28.468 1.00 64.61 ATOM 237 NH2 ARG S 92 7.642 90.818 27.605 1.00 63.14 ATOM 238 N PRO S 97 7.372 84.240 28.248 1.00107.67 ATOM 239 CA PRO S 97 8.059 85.172 27.339 1.00104.55 ATOM 240 C PRO S 97 7.562 85.087 25.875 1.00103.04 ATOM 241 O PRO S 97 8.290 85.460 24.940 1.00100.15 ATOM 242 CB PRO S 97 9.535 84.750 27.452 1.00104.96 ATOM 243 CG PRO S 97 9.514 83.370 28.030 1.00107.36 ATOM 244 CD PRO S 97 8.306 83.317 28.914 1.00109.07 TER