HEADER APOPTOSIS/IMMUNE SYSTEM 09-JAN-14 4OD2 TITLE Crystal structure of the Fab fragment of an anti-DR5 antibody bound TITLE 2 to DR5 COMPND MOL_ID: 3; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 10B; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.20 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL S 93 REMARK 465 LYS S 94 REMARK 465 VAL S 95 REMARK 465 GLY S 96 DBREF 4OD2 S 20 130 UNP O14763 TR10B_HUMAN 73 183 SEQRES 1 S 28 GLU MET CYS ARG LYS CYS ARG THR GLY CYS PRO ARG GLY SEQRES 2 S 28 MET VAL LYS VAL GLY ASP CYS THR PRO TRP SER ASP ILE SEQRES 3 S 28 GLU CYS ATOM 1 N GLU S 98 6.326 84.616 25.688 1.00102.12 ATOM 2 CA GLU S 98 5.766 84.432 24.344 1.00 99.06 ATOM 3 C GLU S 98 4.470 85.222 24.058 1.00 94.91 ATOM 4 O GLU S 98 4.364 85.872 23.014 1.00 92.94 ATOM 5 CB GLU S 98 5.592 82.943 24.033 1.00103.39 ATOM 6 CG GLU S 98 6.899 82.238 23.682 1.00106.20 ATOM 7 CD GLU S 98 6.695 80.855 23.072 1.00110.63 ATOM 8 OE1 GLU S 98 5.713 80.654 22.313 1.00111.71 ATOM 9 OE2 GLU S 98 7.528 79.961 23.346 1.00112.03 ATOM 10 N MET S 99 3.489 85.141 24.963 1.00 91.15 ATOM 11 CA MET S 99 2.257 85.951 24.875 1.00 85.07 ATOM 12 C MET S 99 1.721 86.286 26.271 1.00 80.94 ATOM 13 O MET S 99 1.885 85.506 27.217 1.00 80.89 ATOM 14 CB MET S 99 1.163 85.257 24.037 1.00 88.27 ATOM 15 CG MET S 99 1.299 85.363 22.516 1.00 90.66 ATOM 16 SD MET S 99 1.192 87.024 21.790 1.00 91.12 ATOM 17 CE MET S 99 1.000 86.659 20.044 1.00 89.79 ATOM 18 N CYS S 100 1.090 87.453 26.388 1.00 75.33 ATOM 19 CA CYS S 100 0.510 87.896 27.646 1.00 72.95 ATOM 20 C CYS S 100 -0.665 87.000 28.016 1.00 74.13 ATOM 21 O CYS S 100 -1.491 86.667 27.168 1.00 73.65 ATOM 22 CB CYS S 100 0.069 89.359 27.554 1.00 70.02 ATOM 23 SG CYS S 100 1.414 90.559 27.345 1.00 66.23 ATOM 24 N ARG S 101 -0.726 86.604 29.283 1.00 74.81 ATOM 25 CA ARG S 101 -1.783 85.724 29.768 1.00 76.29 ATOM 26 C ARG S 101 -2.793 86.522 30.567 1.00 76.21 ATOM 27 O ARG S 101 -2.429 87.501 31.211 1.00 75.42 ATOM 28 CB ARG S 101 -1.193 84.648 30.678 1.00 78.86 ATOM 29 CG ARG S 101 -0.249 83.637 30.033 1.00 80.17 ATOM 30 CD ARG S 101 0.073 82.509 31.013 1.00 83.90 ATOM 31 NE ARG S 101 -1.120 82.144 31.776 1.00 86.80 ATOM 32 CZ ARG S 101 -1.923 81.121 31.495 1.00 89.38 ATOM 33 NH1 ARG S 101 -1.652 80.307 30.480 1.00 90.43 ATOM 34 NH2 ARG S 101 -2.997 80.898 32.244 1.00 91.83 ATOM 35 N LYS S 102 -4.051 86.091 30.546 1.00 76.88 ATOM 36 CA LYS S 102 -5.084 86.690 31.393 1.00 78.58 ATOM 37 C LYS S 102 -4.911 86.264 32.866 1.00 82.60 ATOM 38 O LYS S 102 -4.641 85.094 33.150 1.00 84.87 ATOM 39 CB LYS S 102 -6.457 86.283 30.874 1.00 77.72 ATOM 40 CG LYS S 102 -7.635 86.955 31.552 1.00 78.19 ATOM 41 CD LYS S 102 -8.829 86.018 31.522 1.00 78.94 ATOM 42 CE LYS S 102 -10.109 86.743 31.852 1.00 79.09 ATOM 43 NZ LYS S 102 -11.265 85.888 31.506 1.00 79.90 ATOM 44 N CYS S 103 -5.071 87.208 33.796 1.00 85.78 ATOM 45 CA CYS S 103 -4.849 86.937 35.225 1.00 91.25 ATOM 46 C CYS S 103 -5.889 85.976 35.791 1.00 95.17 ATOM 47 O CYS S 103 -7.042 85.959 35.342 1.00 94.48 ATOM 48 CB CYS S 103 -4.843 88.229 36.063 1.00 93.76 ATOM 49 SG CYS S 103 -4.141 89.688 35.253 1.00 91.91 ATOM 50 N ARG S 104 -5.464 85.176 36.770 1.00100.48 ATOM 51 CA ARG S 104 -6.375 84.315 37.509 1.00106.11 ATOM 52 C ARG S 104 -7.265 85.211 38.371 1.00108.89 ATOM 53 O ARG S 104 -6.771 85.979 39.202 1.00110.76 ATOM 54 CB ARG S 104 -5.608 83.296 38.365 1.00110.94 ATOM 55 CG ARG S 104 -6.392 82.018 38.666 1.00115.64 ATOM 56 CD ARG S 104 -5.744 81.136 39.735 1.00121.37 ATOM 57 NE ARG S 104 -4.412 80.649 39.363 1.00121.46 ATOM 58 CZ ARG S 104 -3.875 79.501 39.779 1.00126.01 ATOM 59 NH1 ARG S 104 -4.551 78.684 40.582 1.00131.63 ATOM 60 NH2 ARG S 104 -2.655 79.163 39.379 1.00125.26 ATOM 61 N THR S 105 -8.572 85.122 38.142 1.00110.93 ATOM 62 CA THR S 105 -9.553 85.962 38.825 1.00114.10 ATOM 63 C THR S 105 -9.654 85.634 40.316 1.00120.94 ATOM 64 O THR S 105 -9.583 86.536 41.150 1.00124.25 ATOM 65 CB THR S 105 -10.947 85.834 38.183 1.00113.63 ATOM 66 OG1 THR S 105 -11.423 84.491 38.345 1.00116.70 ATOM 67 CG2 THR S 105 -10.898 86.179 36.695 1.00108.75 ATOM 68 N GLY S 106 -9.822 84.352 40.643 1.00125.68 ATOM 69 CA GLY S 106 -9.915 83.902 42.038 1.00134.69 ATOM 70 C GLY S 106 -8.833 82.901 42.406 1.00140.14 ATOM 71 O GLY S 106 -8.129 82.395 41.532 1.00136.63 ATOM 72 N CYS S 107 -8.695 82.621 43.700 1.00149.87 ATOM 73 CA CYS S 107 -7.727 81.632 44.176 1.00157.41 ATOM 74 C CYS S 107 -8.399 80.283 44.457 1.00161.56 ATOM 75 O CYS S 107 -9.586 80.246 44.789 1.00162.74 ATOM 76 CB CYS S 107 -7.016 82.132 45.440 1.00169.92 ATOM 77 SG CYS S 107 -5.665 83.308 45.177 1.00175.93 ATOM 78 N PRO S 108 -7.648 79.170 44.307 1.00162.94 ATOM 79 CA PRO S 108 -8.117 77.852 44.765 1.00167.90 ATOM 80 C PRO S 108 -8.273 77.801 46.285 1.00174.92 ATOM 81 O PRO S 108 -7.653 78.598 46.995 1.00176.13 ATOM 82 CB PRO S 108 -6.997 76.905 44.323 1.00168.54 ATOM 83 CG PRO S 108 -6.334 77.605 43.188 1.00161.16 ATOM 84 CD PRO S 108 -6.398 79.064 43.530 1.00159.49 ATOM 85 N ARG S 109 -9.087 76.866 46.773 1.00179.87 ATOM 86 CA ARG S 109 -9.394 76.764 48.203 1.00187.59 ATOM 87 C ARG S 109 -8.172 76.509 49.079 1.00193.57 ATOM 88 O ARG S 109 -7.217 75.856 48.654 1.00193.94 ATOM 89 CB ARG S 109 -10.430 75.674 48.456 1.00192.80 ATOM 90 CG ARG S 109 -11.849 76.085 48.123 1.00190.49 ATOM 91 CD ARG S 109 -12.813 74.961 48.451 1.00196.57 ATOM 92 NE ARG S 109 -13.850 74.864 47.432 1.00192.46 ATOM 93 CZ ARG S 109 -14.530 73.760 47.149 1.00195.32 ATOM 94 NH1 ARG S 109 -14.293 72.630 47.808 1.00202.47 ATOM 95 NH2 ARG S 109 -15.444 73.790 46.189 1.00191.33 ATOM 96 N GLY S 110 -8.222 77.031 50.305 1.00199.47 ATOM 97 CA GLY S 110 -7.143 76.878 51.285 1.00205.66 ATOM 98 C GLY S 110 -5.924 77.741 51.005 1.00201.99 ATOM 99 O GLY S 110 -4.884 77.586 51.651 1.00205.65 ATOM 100 N MET S 111 -6.059 78.653 50.043 1.00194.30 ATOM 101 CA MET S 111 -4.960 79.513 49.608 1.00190.64 ATOM 102 C MET S 111 -5.341 80.994 49.657 1.00187.59 ATOM 103 O MET S 111 -6.523 81.351 49.589 1.00183.82 ATOM 104 CB MET S 111 -4.500 79.127 48.196 1.00184.32 ATOM 105 CG MET S 111 -3.756 77.801 48.112 1.00185.40 ATOM 106 SD MET S 111 -3.019 77.489 46.497 1.00175.59 ATOM 107 CE MET S 111 -2.209 75.916 46.779 1.00182.97 ATOM 108 N ASP S 116 -2.274 89.755 44.027 1.00123.49 ATOM 109 CA ASP S 116 -2.553 90.757 42.998 1.00119.32 ATOM 110 C ASP S 116 -1.825 90.519 41.670 1.00113.95 ATOM 111 O ASP S 116 -0.606 90.311 41.642 1.00113.48 ATOM 112 CB ASP S 116 -2.257 92.172 43.513 1.00121.36 ATOM 113 CG ASP S 116 -3.512 93.030 43.637 1.00122.28 ATOM 114 OD1 ASP S 116 -4.603 92.585 43.209 1.00120.45 ATOM 115 OD2 ASP S 116 -3.404 94.162 44.159 1.00124.93 ATOM 116 N CYS S 117 -2.594 90.567 40.579 1.00110.03 ATOM 117 CA CYS S 117 -2.065 90.423 39.222 1.00105.65 ATOM 118 C CYS S 117 -1.292 91.680 38.803 1.00103.86 ATOM 119 O CYS S 117 -1.814 92.794 38.870 1.00104.22 ATOM 120 CB CYS S 117 -3.194 90.114 38.218 1.00101.70 ATOM 121 SG CYS S 117 -2.704 90.452 36.504 1.00 97.06 ATOM 122 N THR S 118 -0.043 91.491 38.386 1.00103.11 ATOM 123 CA THR S 118 0.804 92.592 37.929 1.00101.64 ATOM 124 C THR S 118 1.097 92.404 36.441 1.00 97.64 ATOM 125 O THR S 118 0.710 91.388 35.864 1.00 95.69 ATOM 126 CB THR S 118 2.151 92.643 38.688 1.00105.24 ATOM 127 OG1 THR S 118 3.012 91.592 38.225 1.00103.93 ATOM 128 CG2 THR S 118 1.956 92.543 40.218 1.00111.84 ATOM 129 N PRO S 119 1.772 93.380 35.806 1.00 95.60 ATOM 130 CA PRO S 119 2.226 93.151 34.439 1.00 92.49 ATOM 131 C PRO S 119 3.335 92.100 34.280 1.00 93.72 ATOM 132 O PRO S 119 3.791 91.871 33.157 1.00 93.29 ATOM 133 CB PRO S 119 2.728 94.529 34.010 1.00 89.62 ATOM 134 CG PRO S 119 1.903 95.471 34.801 1.00 92.84 ATOM 135 CD PRO S 119 1.812 94.814 36.146 1.00 96.91 ATOM 136 N TRP S 120 3.770 91.468 35.369 1.00 98.99 ATOM 137 CA TRP S 120 4.757 90.386 35.261 1.00101.63 ATOM 138 C TRP S 120 4.527 89.249 36.221 1.00106.90 ATOM 139 O TRP S 120 5.366 88.352 36.327 1.00108.78 ATOM 140 CB TRP S 120 6.188 90.903 35.406 1.00103.83 ATOM 141 CG TRP S 120 6.343 92.394 35.235 1.00104.99 ATOM 142 CD1 TRP S 120 6.672 93.091 34.069 1.00101.47 ATOM 143 CD2 TRP S 120 6.179 93.432 36.276 1.00110.11 ATOM 144 NE1 TRP S 120 6.717 94.443 34.307 1.00103.56 ATOM 145 CE2 TRP S 120 6.433 94.718 35.611 1.00108.73 ATOM 146 CE3 TRP S 120 5.860 93.422 37.647 1.00114.99 ATOM 147 CZ2 TRP S 120 6.365 95.931 36.304 1.00112.32 ATOM 148 CZ3 TRP S 120 5.793 94.649 38.331 1.00117.14 ATOM 149 CH2 TRP S 120 6.040 95.871 37.675 1.00116.72 ATOM 150 N SER S 121 3.400 89.268 36.932 1.00110.31 ATOM 151 CA SER S 121 3.034 88.155 37.814 1.00116.60 ATOM 152 C SER S 121 1.527 87.965 37.929 1.00119.12 ATOM 153 O SER S 121 0.756 88.927 37.892 1.00115.75 ATOM 154 CB SER S 121 3.664 88.304 39.210 1.00121.91 ATOM 155 OG SER S 121 2.989 89.269 40.002 1.00123.92 ATOM 156 N ASP S 122 1.124 86.707 38.071 1.00123.73 ATOM 157 CA ASP S 122 -0.264 86.355 38.296 1.00129.60 ATOM 158 C ASP S 122 -0.650 86.840 39.690 1.00142.30 ATOM 159 O ASP S 122 0.105 87.584 40.326 1.00144.63 ATOM 160 CB ASP S 122 -0.430 84.837 38.184 1.00127.52 ATOM 161 CG ASP S 122 -1.836 84.422 37.788 1.00125.00 ATOM 162 OD1 ASP S 122 -2.721 85.296 37.667 1.00120.73 ATOM 163 OD2 ASP S 122 -2.053 83.209 37.597 1.00125.05 ATOM 164 N ILE S 123 -1.829 86.437 40.157 1.00 76.24 ATOM 165 CA ILE S 123 -2.210 86.618 41.553 1.00 82.36 ATOM 166 C ILE S 123 -1.367 85.662 42.402 1.00 90.55 ATOM 167 O ILE S 123 -1.038 84.554 41.956 1.00 87.34 ATOM 168 CB ILE S 123 -3.702 86.302 41.760 1.00 79.35 ATOM 169 CG1 ILE S 123 -4.026 85.129 41.539 0.00 93.15 ATOM 170 CG2 ILE S 123 -4.219 87.613 41.283 0.00 92.01 ATOM 171 CD1 ILE S 123 -5.489 84.915 41.844 0.00 93.07 ATOM 172 N GLU S 124 -0.984 86.090 43.601 1.00103.53 ATOM 173 CA GLU S 124 -0.383 85.148 44.534 1.00115.63 ATOM 174 C GLU S 124 -1.428 84.658 45.537 1.00117.20 ATOM 175 O GLU S 124 -2.187 85.454 46.097 1.00116.22 ATOM 176 CB GLU S 124 0.853 85.715 45.234 1.00128.00 ATOM 177 CG GLU S 124 1.697 84.616 45.873 1.00143.90 ATOM 178 CD GLU S 124 3.004 85.106 46.467 1.00159.57 ATOM 179 OE1 GLU S 124 3.094 86.297 46.846 1.00171.40 ATOM 180 OE2 GLU S 124 3.946 84.286 46.565 1.00165.04 ATOM 181 N CYS S 125 -1.467 83.338 45.727 1.00111.59 ATOM 182 CA CYS S 125 -2.404 82.689 46.643 1.00105.53 ATOM 183 C CYS S 125 -1.667 82.086 47.845 1.00105.62 ATOM 184 O CYS S 125 -2.326 81.667 48.844 1.00 95.40 ATOM 185 CB CYS S 125 -3.212 81.611 45.911 1.00 91.48 ATOM 186 SG CYS S 125 -4.131 82.179 44.453 1.00 90.68 TER