HEADER VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR 19-AUG-14 4R4N TITLE Crystal structure of the anti-hiv-1 antibody 2.2c in complex with TITLE 2 hiv-1 93ug037 gp120 COMPND MOL_ID: 2; COMPND 2 MOLECULE: M48U1 peptide; COMPND 3 CHAIN: a, b, e, i, m, p, s, v; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.56 ANGSTORMS DBREF 4R4N v 1 27 PDB 4R4N 4R4N 1 27 MODRES 4R4N ASN 146 ASN GLYCOSYLATION SITE MODRES 4R4N ASN 173 ASN GLYCOSYLATION SITE MODRES 4R4N ASN 253 ASN GLYCOSYLATION SITE MODRES 4R4N ASN 160 ASN GLYCOSYLATION SITE MODRES 4R4N U2X v 23 TYR O-(CYCLOHEXYLMETHYL)-L-TYROSINE SEQRES 1 v 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 v 28 GLY LEU LEU GLY ARG CYS ALA DPR THR TYR CYS ALA CYS SEQRES 3 v 28 VAL NH2 ATOM 1 CA MPT v 1 0.480 -44.665 -93.921 1.00183.96 ATOM 2 C MPT v 1 1.251 -43.392 -94.064 1.00184.79 ATOM 3 O MPT v 1 1.280 -42.628 -93.063 1.00187.82 ATOM 4 CB MPT v 1 -0.731 -44.791 -94.774 1.00188.31 ATOM 5 SG MPT v 1 -1.859 -43.434 -94.713 1.00196.15 ATOM 6 N ASN v 2 1.736 -43.077 -95.315 1.00193.13 ATOM 7 CA ASN v 2 2.041 -41.655 -95.466 1.00197.44 ATOM 8 C ASN v 2 0.812 -40.863 -95.873 1.00204.03 ATOM 9 O ASN v 2 0.476 -40.772 -97.058 1.00208.37 ATOM 10 CB ASN v 2 3.158 -41.420 -96.477 1.00198.31 ATOM 11 CG ASN v 2 3.645 -39.988 -96.458 1.00200.12 ATOM 12 OD1 ASN v 2 3.294 -39.183 -97.322 1.00204.97 ATOM 13 ND2 ASN v 2 4.428 -39.648 -95.440 1.00196.41 ATOM 14 N LEU v 3 0.154 -40.273 -94.883 1.00199.64 ATOM 15 CA LEU v 3 -1.129 -39.619 -95.099 1.00206.35 ATOM 16 C LEU v 3 -1.094 -38.499 -96.138 1.00210.86 ATOM 17 O LEU v 3 -1.986 -38.414 -96.980 1.00216.25 ATOM 18 CB LEU v 3 -1.693 -39.111 -93.771 1.00207.36 ATOM 19 CG LEU v 3 -3.115 -38.544 -93.797 1.00214.62 ATOM 20 CD1 LEU v 3 -4.123 -39.558 -94.311 1.00216.28 ATOM 21 CD2 LEU v 3 -3.507 -38.065 -92.405 1.00216.02 ATOM 22 N HIS v 4 -0.077 -37.638 -96.093 1.00207.16 ATOM 23 CA HIS v 4 -0.003 -36.533 -97.042 1.00211.25 ATOM 24 C HIS v 4 0.038 -37.014 -98.487 1.00212.82 ATOM 25 O HIS v 4 -0.728 -36.547 -99.326 1.00218.17 ATOM 26 CB HIS v 4 1.204 -35.634 -96.769 1.00210.48 ATOM 27 CG HIS v 4 1.444 -34.624 -97.845 1.00214.02 ATOM 28 ND1 HIS v 4 0.616 -33.541 -98.046 1.00218.97 ATOM 29 CD2 HIS v 4 2.411 -34.538 -98.789 1.00213.97 ATOM 30 CE1 HIS v 4 1.062 -32.831 -99.065 1.00221.75 ATOM 31 NE2 HIS v 4 2.153 -33.412 -99.530 1.00218.85 ATOM 32 N PHE v 5 0.912 -37.971 -98.777 1.00210.00 ATOM 33 CA PHE v 5 1.026 -38.470-100.140 1.00212.83 ATOM 34 C PHE v 5 -0.191 -39.309-100.497 1.00213.09 ATOM 35 O PHE v 5 -0.630 -39.304-101.650 1.00217.26 ATOM 36 CB PHE v 5 2.335 -39.242-100.338 1.00208.56 ATOM 37 CG PHE v 5 3.564 -38.358-100.353 1.00208.65 ATOM 38 CD1 PHE v 5 3.510 -37.074-100.876 1.00212.95 ATOM 39 CD2 PHE v 5 4.769 -38.814 -99.842 1.00203.90 ATOM 40 CE1 PHE v 5 4.629 -36.267-100.888 1.00212.03 ATOM 41 CE2 PHE v 5 5.891 -38.006 -99.851 1.00199.55 ATOM 42 CZ PHE v 5 5.819 -36.733-100.375 1.00205.26 ATOM 43 N CYS v 6 -0.759 -39.993 -99.505 1.00208.29 ATOM 44 CA CYS v 6 -2.023 -40.683 -99.708 1.00212.35 ATOM 45 C CYS v 6 -3.085 -39.685-100.127 1.00218.64 ATOM 46 O CYS v 6 -3.834 -39.919-101.073 1.00222.25 ATOM 47 CB CYS v 6 -2.476 -41.412 -98.445 1.00208.89 ATOM 48 SG CYS v 6 -4.049 -42.292 -98.664 1.00212.87 ATOM 49 N GLN v 7 -3.149 -38.562 -99.421 1.00214.19 ATOM 50 CA GLN v 7 -4.089 -37.517 -99.782 1.00219.76 ATOM 51 C GLN v 7 -3.735 -36.946-101.149 1.00221.52 ATOM 52 O GLN v 7 -4.612 -36.685-101.958 1.00225.34 ATOM 53 CB GLN v 7 -4.100 -36.413 -98.722 1.00219.69 ATOM 54 CG GLN v 7 -4.773 -36.826 -97.418 1.00218.78 ATOM 55 CD GLN v 7 -4.537 -35.832 -96.302 1.00219.64 ATOM 56 OE1 GLN v 7 -3.581 -35.063 -96.338 1.00218.07 ATOM 57 NE2 GLN v 7 -5.405 -35.843 -95.301 1.00220.56 ATOM 58 N LEU v 8 -2.443 -36.787-101.412 1.00215.97 ATOM 59 CA LEU v 8 -1.976 -36.248-102.684 1.00220.45 ATOM 60 C LEU v 8 -2.332 -37.158-103.864 1.00222.76 ATOM 61 O LEU v 8 -2.434 -36.694-104.998 1.00229.53 ATOM 62 CB LEU v 8 -0.463 -36.034-102.624 1.00218.33 ATOM 63 CG LEU v 8 0.214 -35.374-103.822 1.00221.03 ATOM 64 CD1 LEU v 8 -0.429 -34.042-104.184 1.00224.97 ATOM 65 CD2 LEU v 8 1.681 -35.191-103.497 1.00216.77 ATOM 66 N ARG v 9 -2.520 -38.449-103.595 1.00219.50 ATOM 67 CA ARG v 9 -2.826 -39.417-104.648 1.00220.33 ATOM 68 C ARG v 9 -4.328 -39.559-104.894 1.00224.05 ATOM 69 O ARG v 9 -4.773 -39.614-106.041 1.00227.09 ATOM 70 CB ARG v 9 -2.243 -40.783-104.290 1.00215.61 ATOM 71 CG ARG v 9 -0.724 -40.822-104.231 1.00212.15 ATOM 72 CD ARG v 9 -0.232 -42.182-103.776 1.00209.52 ATOM 73 NE ARG v 9 -0.582 -43.235-104.726 1.00212.42 ATOM 74 CZ ARG v 9 -0.375 -44.532-104.520 1.00207.87 ATOM 75 NH1 ARG v 9 0.176 -44.954-103.388 1.00200.34 ATOM 76 NH2 ARG v 9 -0.723 -45.412-105.449 1.00210.17 ATOM 77 N CYS v 10 -5.108 -39.617-103.820 1.00215.75 ATOM 78 CA CYS v 10 -6.539 -39.890-103.934 1.00217.27 ATOM 79 C CYS v 10 -7.346 -38.769-104.616 1.00222.69 ATOM 80 O CYS v 10 -8.225 -39.043-105.431 1.00225.12 ATOM 81 CB CYS v 10 -7.115 -40.222-102.558 1.00215.82 ATOM 82 SG CYS v 10 -6.485 -41.803-101.904 1.00209.06 ATOM 83 N LYS v 11 -7.090 -37.508-104.275 1.00211.36 ATOM 84 CA LYS v 11 -7.838 -36.417-104.927 1.00216.38 ATOM 85 C LYS v 11 -7.657 -36.402-106.437 1.00219.55 ATOM 86 O LYS v 11 -8.507 -35.876-107.156 1.00224.74 ATOM 87 CB LYS v 11 -7.540 -35.023-104.346 1.00218.70 ATOM 88 CG LYS v 11 -6.121 -34.507-104.451 1.00217.80 ATOM 89 CD LYS v 11 -5.906 -33.129-103.857 1.00218.40 ATOM 90 CE LYS v 11 -6.050 -33.126-102.351 1.00216.12 ATOM 91 NZ LYS v 11 -5.831 -31.758-101.820 1.00219.12 ATOM 92 N SER v 12 -6.573 -36.991-106.928 1.00216.69 ATOM 93 CA SER v 12 -6.391 -37.106-108.369 1.00220.38 ATOM 94 C SER v 12 -7.330 -38.163-108.960 1.00223.11 ATOM 95 O SER v 12 -7.369 -38.355-110.175 1.00228.02 ATOM 96 CB SER v 12 -4.942 -37.445-108.707 1.00219.14 ATOM 97 OG SER v 12 -4.553 -38.657-108.093 1.00214.32 ATOM 98 N LEU v 13 -8.060 -38.861-108.094 1.00223.16 ATOM 99 CA LEU v 13 -9.145 -39.749-108.511 1.00222.53 ATOM 100 C LEU v 13 -10.477 -39.103-108.152 1.00224.09 ATOM 101 O LEU v 13 -11.541 -39.682-108.372 1.00224.81 ATOM 102 CB LEU v 13 -9.045 -41.113-107.817 1.00215.65 ATOM 103 CG LEU v 13 -7.950 -42.091-108.243 1.00215.39 ATOM 104 CD1 LEU v 13 -6.559 -41.515-108.043 1.00217.79 ATOM 105 CD2 LEU v 13 -8.103 -43.385-107.457 1.00208.42 ATOM 106 N GLY v 14 -10.406 -37.902-107.588 1.00216.55 ATOM 107 CA GLY v 14 -11.584 -37.188-107.138 1.00219.67 ATOM 108 C GLY v 14 -11.929 -37.452-105.685 1.00217.74 ATOM 109 O GLY v 14 -13.019 -37.100-105.231 1.00218.80 ATOM 110 N LEU v 15 -10.984 -38.038-104.950 1.00221.87 ATOM 111 CA LEU v 15 -11.276 -38.658-103.660 1.00216.94 ATOM 112 C LEU v 15 -10.382 -38.146-102.522 1.00213.51 ATOM 113 O LEU v 15 -9.284 -37.659-102.756 1.00211.91 ATOM 114 CB LEU v 15 -11.101 -40.172-103.809 1.00209.88 ATOM 115 CG LEU v 15 -11.784 -40.797-105.033 1.00210.93 ATOM 116 CD1 LEU v 15 -11.500 -42.290-105.108 1.00205.63 ATOM 117 CD2 LEU v 15 -13.284 -40.541-105.014 1.00214.56 ATOM 118 N LEU v 16 -10.858 -38.255-101.286 1.00215.94 ATOM 119 CA LEU v 16 -10.016 -37.983-100.124 1.00211.95 ATOM 120 C LEU v 16 -9.246 -39.245 -99.760 1.00207.67 ATOM 121 O LEU v 16 -9.686 -40.351-100.065 1.00206.11 ATOM 122 CB LEU v 16 -10.858 -37.555 -98.928 1.00213.28 ATOM 123 CG LEU v 16 -11.622 -36.238 -99.069 1.00217.72 ATOM 124 CD1 LEU v 16 -12.549 -36.046 -97.882 1.00218.97 ATOM 125 CD2 LEU v 16 -10.660 -35.067 -99.195 1.00219.17 ATOM 126 N GLY v 17 -8.101 -39.071 -99.108 1.00219.43 ATOM 127 CA GLY v 17 -7.303 -40.193 -98.647 1.00215.32 ATOM 128 C GLY v 17 -7.310 -40.311 -97.137 1.00211.77 ATOM 129 O GLY v 17 -7.444 -39.323 -96.418 1.00213.42 ATOM 130 N ARG v 18 -7.173 -41.536 -96.654 1.00211.37 ATOM 131 CA ARG v 18 -7.029 -41.794 -95.233 1.00207.47 ATOM 132 C ARG v 18 -6.235 -43.069 -95.063 1.00199.81 ATOM 133 O ARG v 18 -6.188 -43.913 -95.968 1.00198.79 ATOM 134 CB ARG v 18 -8.391 -41.937 -94.553 1.00207.35 ATOM 135 CG ARG v 18 -9.182 -43.170 -94.946 1.00207.14 ATOM 136 CD ARG v 18 -10.521 -43.185 -94.233 1.00210.58 ATOM 137 NE ARG v 18 -11.412 -44.227 -94.735 1.00209.48 ATOM 138 CZ ARG v 18 -12.742 -44.152 -94.723 1.00209.75 ATOM 139 NH1 ARG v 18 -13.356 -43.077 -94.240 1.00212.59 ATOM 140 NH2 ARG v 18 -13.462 -45.156 -95.203 1.00208.83 ATOM 141 N CYS v 19 -5.617 -43.235 -93.902 1.00205.66 ATOM 142 CA CYS v 19 -4.878 -44.469 -93.651 1.00198.29 ATOM 143 C CYS v 19 -5.815 -45.625 -93.337 1.00195.39 ATOM 144 O CYS v 19 -6.860 -45.448 -92.690 1.00197.16 ATOM 145 CB CYS v 19 -3.881 -44.305 -92.507 1.00193.55 ATOM 146 SG CYS v 19 -2.639 -43.010 -92.795 1.00197.50 ATOM 147 N ALA v 20 -5.419 -46.794 -93.828 1.00186.91 ATOM 148 CA ALA v 20 -5.979 -48.079 -93.442 1.00182.86 ATOM 149 C ALA v 20 -4.800 -48.845 -92.868 1.00176.20 ATOM 150 O ALA v 20 -4.095 -49.538 -93.590 1.00174.80 ATOM 151 CB ALA v 20 -6.539 -48.792 -94.651 1.00184.64 ATOM 152 N DPR v 21 -4.549 -48.676 -91.588 1.00176.28 ATOM 153 CA DPR v 21 -3.310 -49.199 -91.014 1.00171.09 ATOM 154 CB DPR v 21 -3.447 -48.872 -89.523 1.00170.73 ATOM 155 CG DPR v 21 -4.335 -47.701 -89.486 1.00176.70 ATOM 156 CD DPR v 21 -5.288 -47.837 -90.629 1.00180.51 ATOM 157 C DPR v 21 -2.126 -48.487 -91.638 1.00171.54 ATOM 158 O DPR v 21 -2.059 -47.259 -91.600 1.00175.55 ATOM 159 N THR v 22 -1.255 -49.255 -92.256 1.00172.06 ATOM 160 CA THR v 22 -0.049 -48.724 -92.883 1.00171.16 ATOM 161 C THR v 22 -0.249 -48.449 -94.375 1.00176.23 ATOM 162 O THR v 22 0.692 -48.064 -95.075 1.00176.35 ATOM 163 CB THR v 22 1.100 -49.713 -92.755 1.00165.85 ATOM 164 OG1 THR v 22 0.727 -50.929 -93.408 1.00165.15 ATOM 165 CG2 THR v 22 1.436 -49.989 -91.281 1.00162.85 ATOM 166 N U2X v 23 -1.488 -48.662 -94.845 1.00169.54 ATOM 167 C U2X v 23 -2.615 -47.237 -96.529 1.00181.37 ATOM 168 O U2X v 23 -3.339 -46.747 -95.680 1.00182.42 ATOM 169 CA U2X v 23 -1.821 -48.461 -96.228 1.00174.46 ATOM 170 CB U2X v 23 -2.516 -49.628 -96.837 1.00173.98 ATOM 171 CG U2X v 23 -2.018 -51.008 -96.584 1.00168.02 ATOM 172 CD1 U2X v 23 -0.753 -51.404 -97.094 1.00164.30 ATOM 173 CD2 U2X v 23 -2.829 -51.892 -95.887 1.00166.76 ATOM 174 CE1 U2X v 23 -0.276 -52.764 -96.872 1.00158.42 ATOM 175 CE2 U2X v 23 -2.341 -53.307 -95.660 1.00160.36 ATOM 176 CZ U2X v 23 -1.117 -53.675 -96.153 1.00156.49 ATOM 177 OH U2X v 23 -0.673 -54.958 -95.948 1.00151.78 ATOM 178 C7 U2X v 23 0.156 -55.544 -96.890 1.00150.83 ATOM 179 C1 U2X v 23 0.576 -59.333 -97.492 1.00146.79 ATOM 180 C2 U2X v 23 0.714 -58.151 -96.567 1.00152.65 ATOM 181 C3 U2X v 23 -0.153 -56.994 -97.171 1.00150.13 ATOM 182 C4 U2X v 23 -1.668 -57.453 -97.172 1.00155.18 ATOM 183 C5 U2X v 23 -1.770 -58.748 -98.020 1.00153.24 ATOM 184 C6 U2X v 23 -0.838 -59.792 -97.476 1.00146.87 ATOM 185 N CYS v 24 -2.502 -46.760 -97.747 1.00185.61 ATOM 186 CA CYS v 24 -3.302 -45.642 -98.223 1.00193.45 ATOM 187 C CYS v 24 -4.628 -46.145 -98.776 1.00196.27 ATOM 188 O CYS v 24 -4.658 -47.052 -99.613 1.00195.29 ATOM 189 CB CYS v 24 -2.550 -44.888 -99.316 1.00198.21 ATOM 190 SG CYS v 24 -3.533 -43.623-100.145 1.00210.55 ATOM 191 N ALA v 25 -5.722 -45.563 -98.299 1.00193.10 ATOM 192 CA ALA v 25 -7.050 -45.840 -98.832 1.00195.40 ATOM 193 C ALA v 25 -7.666 -44.541 -99.332 1.00202.28 ATOM 194 O ALA v 25 -7.560 -43.519 -98.668 1.00205.42 ATOM 195 CB ALA v 25 -7.926 -46.434 -97.766 1.00191.68 ATOM 196 N CYS v 26 -8.298 -44.594-100.502 1.00202.07 ATOM 197 CA CYS v 26 -9.090 -43.478-101.018 1.00208.25 ATOM 198 C CYS v 26 -10.546 -43.657-100.592 1.00208.24 ATOM 199 O CYS v 26 -11.057 -44.775-100.564 1.00207.08 ATOM 200 CB CYS v 26 -8.989 -43.412-102.543 1.00210.64 ATOM 201 SG CYS v 26 -7.309 -43.169-103.178 1.00211.35 ATOM 202 N VAL v 27 -11.234 -42.519-100.271 1.00199.11 ATOM 203 CA VAL v 27 -12.556 -42.576 -99.655 1.00199.65 ATOM 204 C VAL v 27 -13.730 -42.601-100.610 1.00203.39 ATOM 205 O VAL v 27 -14.100 -41.559-101.142 1.00208.44 ATOM 206 CB VAL v 27 -12.705 -41.718 -98.409 1.00201.27 ATOM 207 CG1 VAL v 27 -14.075 -41.733 -97.807 1.00203.36 ATOM 208 CG2 VAL v 27 -11.619 -41.946 -97.403 1.00199.83 ATOM 209 N NH2 v 28 -14.461 -43.812-100.816 1.00193.15 TER