HEADER ribosome 24-JUL-14 4U4Y TITLE Crystal structure of Pactamycin bound to the yeast 80S ribosome COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.20 ANGSTORMS DBREF 4U4Y q 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET q 1 226.265 0.962 237.372 1.00 52.77 ATOM 2 CA MET q 1 225.851 0.410 236.091 1.00 49.51 ATOM 3 C MET q 1 226.623 1.020 234.929 1.00 48.57 ATOM 4 O MET q 1 227.027 2.175 234.992 1.00 49.08 ATOM 5 CB MET q 1 224.370 0.638 235.896 1.00 46.30 ATOM 6 CG MET q 1 223.967 2.085 235.918 1.00 45.33 ATOM 7 SD MET q 1 222.205 2.244 235.518 1.00 43.05 ATOM 8 CE MET q 1 222.162 1.289 234.032 1.00 42.53 ATOM 9 N ARG q 2 226.823 0.243 233.867 1.00 48.32 ATOM 10 CA ARG q 2 227.600 0.709 232.712 1.00 48.81 ATOM 11 C ARG q 2 227.059 2.038 232.197 1.00 47.61 ATOM 12 O ARG q 2 225.850 2.217 232.110 1.00 45.76 ATOM 13 CB ARG q 2 227.603 -0.338 231.582 1.00 48.49 ATOM 14 CG ARG q 2 227.375 0.236 230.182 1.00 47.73 ATOM 15 CD ARG q 2 228.300 -0.330 229.126 1.00 49.09 ATOM 16 NE ARG q 2 227.836 -1.582 228.552 1.00 48.54 ATOM 17 CZ ARG q 2 228.050 -1.940 227.296 1.00 49.02 ATOM 18 NH1 ARG q 2 228.695 -1.138 226.485 1.00 50.08 ATOM 19 NH2 ARG q 2 227.605 -3.090 226.844 1.00 48.74 ATOM 20 N ALA q 3 227.967 2.960 231.894 1.00 49.06 ATOM 21 CA ALA q 3 227.648 4.269 231.370 1.00 48.54 ATOM 22 C ALA q 3 226.548 4.195 230.360 1.00 46.61 ATOM 23 O ALA q 3 225.456 4.661 230.617 1.00 45.06 ATOM 24 CB ALA q 3 228.836 4.868 230.762 1.00 50.80 ATOM 25 N LYS q 4 226.823 3.577 229.219 1.00 47.00 ATOM 26 CA LYS q 4 225.827 3.461 228.138 1.00 45.79 ATOM 27 C LYS q 4 224.379 3.209 228.579 1.00 43.86 ATOM 28 O LYS q 4 223.468 3.846 228.064 1.00 43.11 ATOM 29 CB LYS q 4 226.229 2.354 227.165 1.00 46.53 ATOM 30 CG LYS q 4 225.292 2.268 225.990 1.00 45.95 ATOM 31 CD LYS q 4 225.689 1.168 225.069 1.00 46.90 ATOM 32 CE LYS q 4 226.616 1.650 224.024 1.00 48.80 ATOM 33 NZ LYS q 4 226.758 0.482 223.151 1.00 49.54 ATOM 34 N TRP q 5 224.182 2.292 229.526 1.00 44.27 ATOM 35 CA TRP q 5 222.859 2.006 230.066 1.00 43.46 ATOM 36 C TRP q 5 222.383 3.084 231.012 1.00 43.13 ATOM 37 O TRP q 5 221.213 3.445 230.999 1.00 42.16 ATOM 38 CB TRP q 5 222.846 0.673 230.779 1.00 44.69 ATOM 39 CG TRP q 5 223.440 -0.452 230.024 1.00 45.31 ATOM 40 CD1 TRP q 5 224.131 -1.510 230.554 1.00 47.53 ATOM 41 CD2 TRP q 5 223.407 -0.671 228.599 1.00 44.50 ATOM 42 NE1 TRP q 5 224.525 -2.373 229.548 1.00 47.37 ATOM 43 CE2 TRP q 5 224.085 -1.879 228.344 1.00 45.54 ATOM 44 CE3 TRP q 5 222.859 0.027 227.518 1.00 43.90 ATOM 45 CZ2 TRP q 5 224.233 -2.389 227.055 1.00 45.48 ATOM 46 CZ3 TRP q 5 223.014 -0.487 226.247 1.00 44.71 ATOM 47 CH2 TRP q 5 223.701 -1.671 226.025 1.00 45.22 ATOM 48 N ARG q 6 223.286 3.590 231.844 1.00 45.32 ATOM 49 CA ARG q 6 223.004 4.799 232.612 1.00 45.35 ATOM 50 C ARG q 6 222.544 5.898 231.654 1.00 43.67 ATOM 51 O ARG q 6 221.613 6.640 231.969 1.00 43.00 ATOM 52 CB ARG q 6 224.229 5.273 233.399 1.00 47.63 ATOM 53 CG ARG q 6 223.930 5.779 234.781 1.00 49.16 ATOM 54 CD ARG q 6 223.882 7.296 234.893 1.00 47.91 ATOM 55 NE ARG q 6 224.917 7.794 235.832 1.00 50.22 ATOM 56 CZ ARG q 6 224.980 9.046 236.336 1.00 50.11 ATOM 57 NH1 ARG q 6 224.056 9.977 236.031 1.00 48.06 ATOM 58 NH2 ARG q 6 225.978 9.382 237.161 1.00 52.38 ATOM 59 N LYS q 7 223.186 6.005 230.489 1.00 42.35 ATOM 60 CA LYS q 7 222.788 7.012 229.530 1.00 42.31 ATOM 61 C LYS q 7 221.336 6.789 229.200 1.00 40.98 ATOM 62 O LYS q 7 220.499 7.648 229.452 1.00 40.33 ATOM 63 CB LYS q 7 223.616 6.945 228.278 1.00 43.71 ATOM 64 CG LYS q 7 223.308 8.028 227.331 1.00 44.25 ATOM 65 CD LYS q 7 224.361 8.100 226.288 1.00 46.28 ATOM 66 CE LYS q 7 223.988 9.140 225.314 1.00 47.18 ATOM 67 NZ LYS q 7 224.958 9.253 224.227 1.00 49.58 ATOM 68 N LYS q 8 221.030 5.602 228.688 1.00 42.34 ATOM 69 CA LYS q 8 219.674 5.224 228.307 1.00 41.70 ATOM 70 C LYS q 8 218.674 5.432 229.453 1.00 40.71 ATOM 71 O LYS q 8 217.510 5.733 229.227 1.00 40.93 ATOM 72 CB LYS q 8 219.694 3.762 227.830 1.00 42.09 ATOM 73 CG LYS q 8 218.363 3.102 227.518 1.00 42.64 ATOM 74 CD LYS q 8 218.595 1.641 227.200 1.00 43.04 ATOM 75 CE LYS q 8 218.986 1.430 225.748 1.00 45.61 ATOM 76 NZ LYS q 8 217.800 0.988 224.960 1.00 47.71 ATOM 77 N ARG q 9 219.136 5.286 230.688 1.00 41.75 ATOM 78 CA ARG q 9 218.229 5.439 231.813 1.00 41.38 ATOM 79 C ARG q 9 217.728 6.859 231.836 1.00 41.35 ATOM 80 O ARG q 9 216.523 7.100 231.836 1.00 41.51 ATOM 81 CB ARG q 9 218.900 5.089 233.140 1.00 42.11 ATOM 82 CG ARG q 9 217.999 5.148 234.366 1.00 42.75 ATOM 83 CD ARG q 9 218.877 5.403 235.577 1.00 45.04 ATOM 84 NE ARG q 9 218.890 4.420 236.682 1.00 48.03 ATOM 85 CZ ARG q 9 218.904 3.082 236.592 1.00 49.02 ATOM 86 NH1 ARG q 9 218.870 2.451 235.416 1.00 47.04 ATOM 87 NH2 ARG q 9 218.938 2.359 237.714 1.00 52.42 ATOM 88 N THR q 10 218.657 7.806 231.828 1.00 42.46 ATOM 89 CA THR q 10 218.283 9.200 231.978 1.00 42.78 ATOM 90 C THR q 10 217.440 9.678 230.814 1.00 44.25 ATOM 91 O THR q 10 216.582 10.527 230.997 1.00 45.02 ATOM 92 CB THR q 10 219.490 10.100 232.084 1.00 42.99 ATOM 93 OG1 THR q 10 219.884 10.481 230.761 1.00 43.97 ATOM 94 CG2 THR q 10 220.639 9.391 232.830 1.00 43.05 ATOM 95 N ARG q 11 217.684 9.135 229.626 1.00 41.49 ATOM 96 CA ARG q 11 216.824 9.417 228.479 1.00 44.64 ATOM 97 C ARG q 11 215.418 8.887 228.688 1.00 45.33 ATOM 98 O ARG q 11 214.460 9.423 228.157 1.00 48.32 ATOM 99 CB ARG q 11 217.395 8.828 227.190 1.00 46.62 ATOM 100 CG ARG q 11 218.707 9.433 226.843 1.00 46.20 ATOM 101 CD ARG q 11 219.090 9.277 225.379 1.00 49.25 ATOM 102 NE ARG q 11 219.986 10.379 224.997 1.00 49.21 ATOM 103 CZ ARG q 11 220.991 10.291 224.125 1.00 49.91 ATOM 104 NH1 ARG q 11 221.275 9.137 223.513 1.00 50.82 ATOM 105 NH2 ARG q 11 221.708 11.379 223.864 1.00 49.73 ATOM 106 N ARG q 12 215.294 7.815 229.448 1.00 46.69 ATOM 107 CA ARG q 12 213.988 7.300 229.741 1.00 46.81 ATOM 108 C ARG q 12 213.349 8.161 230.778 1.00 46.13 ATOM 109 O ARG q 12 212.143 8.366 230.749 1.00 47.48 ATOM 110 CB ARG q 12 214.062 5.892 230.249 1.00 44.89 ATOM 111 CG ARG q 12 214.567 4.918 229.274 1.00 45.71 ATOM 112 CD ARG q 12 214.637 3.590 229.954 1.00 44.09 ATOM 113 NE ARG q 12 214.861 2.576 228.959 1.00 45.05 ATOM 114 CZ ARG q 12 215.080 1.309 229.245 1.00 44.23 ATOM 115 NH1 ARG q 12 215.080 0.917 230.515 1.00 43.04 ATOM 116 NH2 ARG q 12 215.298 0.444 228.254 1.00 45.32 ATOM 117 N LEU q 13 214.149 8.652 231.712 1.00 45.34 ATOM 118 CA LEU q 13 213.629 9.591 232.680 1.00 45.07 ATOM 119 C LEU q 13 213.114 10.839 231.982 1.00 46.85 ATOM 120 O LEU q 13 211.956 11.197 232.155 1.00 47.91 ATOM 121 CB LEU q 13 214.692 9.972 233.701 1.00 44.05 ATOM 122 CG LEU q 13 214.275 9.950 235.179 1.00 44.12 ATOM 123 CD1 LEU q 13 215.472 10.349 236.010 1.00 44.45 ATOM 124 CD2 LEU q 13 213.079 10.839 235.486 1.00 44.73 ATOM 125 N LYS q 14 213.983 11.472 231.190 1.00 44.53 ATOM 126 CA LYS q 14 213.677 12.711 230.474 1.00 47.59 ATOM 127 C LYS q 14 212.352 12.660 229.733 1.00 51.47 ATOM 128 O LYS q 14 211.526 13.571 229.826 1.00 53.76 ATOM 129 CB LYS q 14 214.787 13.043 229.485 1.00 48.58 ATOM 130 CG LYS q 14 215.927 13.792 230.127 1.00 45.98 ATOM 131 CD LYS q 14 217.106 13.976 229.183 1.00 46.73 ATOM 132 CE LYS q 14 217.158 15.377 228.580 1.00 49.13 ATOM 133 NZ LYS q 14 218.424 15.611 227.806 1.00 48.93 ATOM 134 N ARG q 15 212.144 11.594 228.988 1.00 47.38 ATOM 135 CA ARG q 15 210.911 11.461 228.273 1.00 51.34 ATOM 136 C ARG q 15 209.753 11.408 229.239 1.00 49.95 ATOM 137 O ARG q 15 208.696 11.977 228.974 1.00 52.97 ATOM 138 CB ARG q 15 210.946 10.225 227.402 1.00 52.17 ATOM 139 CG ARG q 15 211.280 10.557 225.994 1.00 56.84 ATOM 140 CD ARG q 15 210.653 9.558 225.078 1.00 58.88 ATOM 141 NE ARG q 15 211.108 8.226 225.429 1.00 55.20 ATOM 142 CZ ARG q 15 212.323 7.764 225.138 1.00 54.80 ATOM 143 NH1 ARG q 15 213.178 8.555 224.484 1.00 57.76 ATOM 144 NH2 ARG q 15 212.685 6.514 225.487 1.00 51.39 ATOM 145 N LYS q 16 209.942 10.724 230.362 1.00 51.81 ATOM 146 CA LYS q 16 208.844 10.575 231.298 1.00 50.72 ATOM 147 C LYS q 16 208.500 11.944 231.871 1.00 51.91 ATOM 148 O LYS q 16 207.335 12.344 231.904 1.00 53.83 ATOM 149 CB LYS q 16 209.175 9.592 232.405 1.00 47.13 ATOM 150 CG LYS q 16 207.925 8.970 232.988 1.00 47.00 ATOM 151 CD LYS q 16 208.194 8.102 234.239 1.00 44.93 ATOM 152 CE LYS q 16 209.031 8.839 235.327 1.00 44.17 ATOM 153 NZ LYS q 16 209.256 7.999 236.561 1.00 43.76 ATOM 154 N ARG q 17 209.522 12.678 232.287 1.00 51.10 ATOM 155 CA ARG q 17 209.321 13.992 232.853 1.00 52.02 ATOM 156 C ARG q 17 208.760 14.968 231.835 1.00 56.57 ATOM 157 O ARG q 17 207.980 15.836 232.183 1.00 58.13 ATOM 158 CB ARG q 17 210.627 14.521 233.416 1.00 49.44 ATOM 159 CG ARG q 17 210.916 14.085 234.844 1.00 46.64 ATOM 160 CD ARG q 17 211.704 15.154 235.591 1.00 45.77 ATOM 161 NE ARG q 17 213.135 14.924 235.532 1.00 44.26 ATOM 162 CZ ARG q 17 213.830 14.395 236.536 1.00 43.35 ATOM 163 NH1 ARG q 17 213.209 14.052 237.659 1.00 43.89 ATOM 164 NH2 ARG q 17 215.145 14.215 236.437 1.00 42.80 ATOM 165 N ARG q 18 209.158 14.842 230.580 1.00 50.74 ATOM 166 CA ARG q 18 208.579 15.675 229.535 1.00 55.33 ATOM 167 C ARG q 18 207.082 15.489 229.474 1.00 56.54 ATOM 168 O ARG q 18 206.336 16.443 229.353 1.00 57.99 ATOM 169 CB ARG q 18 209.182 15.325 228.194 1.00 57.60 ATOM 170 CG ARG q 18 210.114 16.337 227.643 1.00 57.26 ATOM 171 CD ARG q 18 209.850 16.452 226.158 1.00 60.33 ATOM 172 NE ARG q 18 208.539 17.054 225.856 1.00 61.89 ATOM 173 CZ ARG q 18 207.941 16.986 224.657 1.00 63.69 ATOM 174 NH1 ARG q 18 206.735 17.557 224.455 1.00 64.20 ATOM 175 NH2 ARG q 18 208.553 16.331 223.654 1.00 64.86 ATOM 176 N LYS q 19 206.675 14.225 229.561 1.00 55.21 ATOM 177 CA LYS q 19 205.284 13.787 229.483 1.00 55.21 ATOM 178 C LYS q 19 204.455 14.216 230.688 1.00 54.28 ATOM 179 O LYS q 19 203.274 14.522 230.543 1.00 55.56 ATOM 180 CB LYS q 19 205.231 12.266 229.326 1.00 53.19 ATOM 181 CG LYS q 19 204.720 11.768 227.956 1.00 55.39 ATOM 182 CD LYS q 19 205.168 10.301 227.630 1.00 55.21 ATOM 183 CE LYS q 19 204.586 9.738 226.308 1.00 57.25 ATOM 184 NZ LYS q 19 204.193 8.285 226.410 1.00 54.86 ATOM 185 N VAL q 20 205.074 14.257 231.869 1.00 53.37 ATOM 186 CA VAL q 20 204.397 14.732 233.087 1.00 53.18 ATOM 187 C VAL q 20 204.220 16.252 233.111 1.00 55.37 ATOM 188 O VAL q 20 203.420 16.757 233.861 1.00 56.11 ATOM 189 CB VAL q 20 205.149 14.312 234.372 1.00 50.39 ATOM 190 CG1 VAL q 20 204.270 14.487 235.566 1.00 50.64 ATOM 191 CG2 VAL q 20 205.600 12.880 234.287 1.00 47.98 ATOM 192 N ARG q 21 204.958 16.988 232.292 1.00 51.96 ATOM 193 CA ARG q 21 204.781 18.437 232.229 1.00 53.50 ATOM 194 C ARG q 21 203.655 18.777 231.250 1.00 55.19 ATOM 195 O ARG q 21 202.785 19.599 231.526 1.00 55.92 ATOM 196 CB ARG q 21 206.083 19.114 231.824 1.00 52.29 ATOM 197 CG ARG q 21 206.191 20.537 232.305 1.00 51.56 ATOM 198 CD ARG q 21 207.584 20.873 232.798 1.00 49.02 ATOM 199 NE ARG q 21 208.313 21.802 231.936 1.00 49.42 ATOM 200 CZ ARG q 21 208.265 23.114 232.059 1.00 49.17 ATOM 201 NH1 ARG q 21 207.512 23.635 232.996 1.00 48.74 ATOM 202 NH2 ARG q 21 208.961 23.898 231.249 1.00 49.44 ATOM 203 N ALA q 22 203.669 18.104 230.108 1.00 59.80 ATOM 204 CA ALA q 22 202.544 18.080 229.174 1.00 60.94 ATOM 205 C ALA q 22 201.149 17.891 229.808 1.00 60.74 ATOM 206 O ALA q 22 200.132 18.194 229.183 1.00 61.80 ATOM 207 CB ALA q 22 202.776 16.975 228.163 1.00 61.27 ATOM 208 N ARG q 23 201.103 17.346 231.021 1.00 64.17 ATOM 209 CA ARG q 23 199.842 17.050 231.681 1.00 63.99 ATOM 210 C ARG q 23 199.225 18.340 232.192 1.00 65.05 ATOM 211 O ARG q 23 198.041 18.405 232.546 1.00 65.63 ATOM 212 CB ARG q 23 200.061 16.074 232.825 1.00 62.05 ATOM 213 CG ARG q 23 198.825 15.335 233.204 1.00 61.66 ATOM 214 CD ARG q 23 199.030 13.826 233.009 1.00 60.13 ATOM 215 NE ARG q 23 199.445 13.183 234.260 1.00 58.51 ATOM 216 CZ ARG q 23 198.640 13.030 235.322 1.00 58.70 ATOM 217 NH1 ARG q 23 197.377 13.484 235.267 1.00 60.24 ATOM 218 NH2 ARG q 23 199.099 12.442 236.442 1.00 57.48 ATOM 219 N SER q 24 200.058 19.374 232.230 1.00 63.17 ATOM 220 CA SER q 24 199.657 20.675 232.734 1.00 63.57 ATOM 221 C SER q 24 199.290 21.491 231.547 1.00 64.64 ATOM 222 O SER q 24 199.155 22.715 231.638 1.00 64.86 ATOM 223 CB SER q 24 200.791 21.360 233.481 1.00 62.73 ATOM 224 OG SER q 24 201.556 22.122 232.554 1.00 63.08 ATOM 225 N LYS q 25 199.139 20.777 230.435 1.00 67.25 ATOM 226 CA LYS q 25 199.198 21.329 229.082 1.00 67.99 ATOM 227 C LYS q 25 200.592 21.952 228.943 1.00 67.18 ATOM 228 O LYS q 25 201.543 21.514 229.625 1.00 66.30 ATOM 229 CB LYS q 25 198.050 22.330 228.800 1.00 68.87 ATOM 230 CG LYS q 25 196.623 21.686 228.708 1.00 69.75 ATOM 231 CD LYS q 25 196.492 20.728 227.498 1.00 70.49 ATOM 232 CE LYS q 25 195.026 20.471 227.041 1.00 71.90 ATOM 233 NZ LYS q 25 194.305 21.500 226.171 1.00 73.30 TER