HEADER ribosome 24-JUL-14 4U52 TITLE Crystal structure of Nagilactone C bound to the yeast 80S ribosome COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS DBREF 4U52 q 1 25 PDB 4U52 4U52 1 25 SEQRES 1 q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET q 1 226.205 1.732 235.306 1.00 34.77 ATOM 2 CA MET q 1 225.890 1.066 234.056 1.00 34.31 ATOM 3 C MET q 1 226.771 1.591 232.911 1.00 34.24 ATOM 4 O MET q 1 227.456 2.596 233.053 1.00 34.49 ATOM 5 CB MET q 1 224.414 1.248 233.738 1.00 33.66 ATOM 6 CG MET q 1 223.968 2.700 233.623 1.00 33.29 ATOM 7 SD MET q 1 222.181 2.900 233.590 1.00 32.82 ATOM 8 CE MET q 1 221.778 1.874 232.183 1.00 32.60 ATOM 9 N ARG q 2 226.767 0.892 231.786 1.00 34.06 ATOM 10 CA ARG q 2 227.597 1.289 230.666 1.00 33.47 ATOM 11 C ARG q 2 227.120 2.658 230.204 1.00 32.99 ATOM 12 O ARG q 2 225.920 2.898 230.141 1.00 32.80 ATOM 13 CB ARG q 2 227.547 0.230 229.542 1.00 33.12 ATOM 14 CG ARG q 2 227.635 0.773 228.123 1.00 32.53 ATOM 15 CD ARG q 2 228.519 -0.051 227.176 1.00 32.55 ATOM 16 NE ARG q 2 227.870 -1.202 226.546 1.00 32.31 ATOM 17 CZ ARG q 2 228.089 -1.601 225.295 1.00 32.34 ATOM 18 NH1 ARG q 2 228.908 -0.950 224.492 1.00 32.58 ATOM 19 NH2 ARG q 2 227.462 -2.655 224.831 1.00 32.20 ATOM 20 N ALA q 3 228.053 3.566 229.923 1.00 32.85 ATOM 21 CA ALA q 3 227.733 4.919 229.493 1.00 32.78 ATOM 22 C ALA q 3 226.688 4.929 228.403 1.00 32.61 ATOM 23 O ALA q 3 225.681 5.602 228.524 1.00 32.76 ATOM 24 CB ALA q 3 228.934 5.599 229.028 1.00 33.15 ATOM 25 N LYS q 4 226.905 4.172 227.348 1.00 32.01 ATOM 26 CA LYS q 4 225.952 4.130 226.255 1.00 32.02 ATOM 27 C LYS q 4 224.524 3.825 226.691 1.00 31.77 ATOM 28 O LYS q 4 223.570 4.264 226.025 1.00 32.17 ATOM 29 CB LYS q 4 226.406 3.101 225.226 1.00 32.04 ATOM 30 CG LYS q 4 225.301 2.289 224.610 1.00 32.01 ATOM 31 CD LYS q 4 225.781 1.441 223.470 1.00 32.18 ATOM 32 CE LYS q 4 225.964 2.280 222.252 1.00 32.90 ATOM 33 NZ LYS q 4 226.502 1.446 221.200 1.00 33.12 ATOM 34 N TRP q 5 224.365 3.095 227.805 1.00 33.31 ATOM 35 CA TRP q 5 223.026 2.677 228.260 1.00 33.34 ATOM 36 C TRP q 5 222.436 3.707 229.169 1.00 33.51 ATOM 37 O TRP q 5 221.215 3.898 229.185 1.00 33.71 ATOM 38 CB TRP q 5 223.035 1.322 228.971 1.00 33.30 ATOM 39 CG TRP q 5 223.478 0.165 228.116 1.00 33.15 ATOM 40 CD1 TRP q 5 224.139 -0.941 228.545 1.00 33.34 ATOM 41 CD2 TRP q 5 223.294 -0.004 226.693 1.00 33.06 ATOM 42 NE1 TRP q 5 224.382 -1.789 227.491 1.00 33.12 ATOM 43 CE2 TRP q 5 223.873 -1.241 226.344 1.00 32.94 ATOM 44 CE3 TRP q 5 222.687 0.761 225.685 1.00 33.41 ATOM 45 CZ2 TRP q 5 223.884 -1.726 225.030 1.00 32.96 ATOM 46 CZ3 TRP q 5 222.701 0.270 224.372 1.00 33.71 ATOM 47 CH2 TRP q 5 223.302 -0.960 224.061 1.00 33.38 ATOM 48 N ARG q 6 223.305 4.379 229.913 1.00 33.74 ATOM 49 CA ARG q 6 222.892 5.594 230.600 1.00 33.98 ATOM 50 C ARG q 6 222.317 6.587 229.580 1.00 34.33 ATOM 51 O ARG q 6 221.243 7.171 229.787 1.00 34.65 ATOM 52 CB ARG q 6 224.059 6.222 231.363 1.00 34.13 ATOM 53 CG ARG q 6 223.796 6.404 232.825 1.00 34.49 ATOM 54 CD ARG q 6 223.774 7.876 233.286 1.00 34.77 ATOM 55 NE ARG q 6 225.001 8.232 234.046 1.00 35.14 ATOM 56 CZ ARG q 6 225.163 9.347 234.784 1.00 35.58 ATOM 57 NH1 ARG q 6 224.168 10.241 234.910 1.00 35.68 ATOM 58 NH2 ARG q 6 226.329 9.571 235.405 1.00 36.03 ATOM 59 N LYS q 7 223.046 6.767 228.481 1.00 31.78 ATOM 60 CA LYS q 7 222.592 7.608 227.405 1.00 32.44 ATOM 61 C LYS q 7 221.190 7.225 227.003 1.00 32.54 ATOM 62 O LYS q 7 220.322 8.085 226.823 1.00 33.11 ATOM 63 CB LYS q 7 223.499 7.480 226.216 1.00 32.87 ATOM 64 CG LYS q 7 223.431 8.659 225.341 1.00 33.97 ATOM 65 CD LYS q 7 224.530 8.600 224.353 1.00 34.25 ATOM 66 CE LYS q 7 224.605 9.845 223.565 1.00 35.27 ATOM 67 NZ LYS q 7 225.151 9.480 222.264 1.00 35.51 ATOM 68 N LYS q 8 220.970 5.922 226.853 1.00 33.48 ATOM 69 CA LYS q 8 219.665 5.430 226.453 1.00 33.79 ATOM 70 C LYS q 8 218.669 5.775 227.534 1.00 33.59 ATOM 71 O LYS q 8 217.491 5.981 227.262 1.00 34.10 ATOM 72 CB LYS q 8 219.702 3.926 226.223 1.00 33.30 ATOM 73 CG LYS q 8 218.461 3.330 225.593 1.00 33.68 ATOM 74 CD LYS q 8 218.736 1.872 225.222 1.00 33.35 ATOM 75 CE LYS q 8 219.060 1.731 223.776 1.00 34.11 ATOM 76 NZ LYS q 8 217.812 1.943 222.996 1.00 35.07 ATOM 77 N ARG q 9 219.155 5.836 228.771 1.00 34.19 ATOM 78 CA ARG q 9 218.260 6.059 229.894 1.00 34.18 ATOM 79 C ARG q 9 217.725 7.450 229.763 1.00 34.82 ATOM 80 O ARG q 9 216.564 7.614 229.485 1.00 35.27 ATOM 81 CB ARG q 9 218.965 5.870 231.244 1.00 33.82 ATOM 82 CG ARG q 9 218.114 5.273 232.349 1.00 34.08 ATOM 83 CD ARG q 9 218.639 5.781 233.635 1.00 34.29 ATOM 84 NE ARG q 9 218.859 4.882 234.776 1.00 34.84 ATOM 85 CZ ARG q 9 218.893 3.551 234.811 1.00 35.15 ATOM 86 NH1 ARG q 9 218.698 2.773 233.740 1.00 34.71 ATOM 87 NH2 ARG q 9 219.136 2.986 235.985 1.00 36.20 ATOM 88 N THR q 10 218.598 8.448 229.908 1.00 33.99 ATOM 89 CA THR q 10 218.167 9.841 229.993 1.00 34.76 ATOM 90 C THR q 10 217.361 10.258 228.783 1.00 35.84 ATOM 91 O THR q 10 216.419 11.007 228.904 1.00 36.49 ATOM 92 CB THR q 10 219.345 10.763 230.138 1.00 34.92 ATOM 93 OG1 THR q 10 220.027 10.815 228.894 1.00 35.59 ATOM 94 CG2 THR q 10 220.308 10.236 231.196 1.00 34.00 ATOM 95 N ARG q 11 217.726 9.738 227.622 1.00 34.36 ATOM 96 CA ARG q 11 216.969 9.965 226.409 1.00 35.53 ATOM 97 C ARG q 11 215.557 9.513 226.591 1.00 35.38 ATOM 98 O ARG q 11 214.658 10.036 225.931 1.00 36.21 ATOM 99 CB ARG q 11 217.565 9.233 225.208 1.00 35.82 ATOM 100 CG ARG q 11 218.839 9.882 224.648 1.00 36.19 ATOM 101 CD ARG q 11 218.981 9.652 223.117 1.00 37.07 ATOM 102 NE ARG q 11 219.675 10.774 222.471 1.00 37.56 ATOM 103 CZ ARG q 11 220.987 10.833 222.226 1.00 37.38 ATOM 104 NH1 ARG q 11 221.775 9.819 222.556 1.00 36.91 ATOM 105 NH2 ARG q 11 221.502 11.903 221.625 1.00 37.68 ATOM 106 N ARG q 12 215.334 8.530 227.457 1.00 35.95 ATOM 107 CA ARG q 12 213.962 8.132 227.725 1.00 35.94 ATOM 108 C ARG q 12 213.374 9.085 228.732 1.00 36.08 ATOM 109 O ARG q 12 212.373 9.739 228.439 1.00 36.81 ATOM 110 CB ARG q 12 213.878 6.711 228.208 1.00 35.10 ATOM 111 CG ARG q 12 214.338 5.725 227.175 1.00 35.04 ATOM 112 CD ARG q 12 214.656 4.394 227.861 1.00 34.19 ATOM 113 NE ARG q 12 214.990 3.306 226.943 1.00 34.12 ATOM 114 CZ ARG q 12 215.363 2.114 227.371 1.00 33.54 ATOM 115 NH1 ARG q 12 215.427 1.908 228.680 1.00 33.19 ATOM 116 NH2 ARG q 12 215.656 1.148 226.508 1.00 33.54 ATOM 117 N LEU q 13 214.021 9.187 229.890 1.00 36.06 ATOM 118 CA LEU q 13 213.635 10.118 230.942 1.00 36.25 ATOM 119 C LEU q 13 213.110 11.391 230.331 1.00 37.26 ATOM 120 O LEU q 13 212.043 11.851 230.707 1.00 37.66 ATOM 121 CB LEU q 13 214.814 10.438 231.871 1.00 35.78 ATOM 122 CG LEU q 13 214.507 10.375 233.377 1.00 35.63 ATOM 123 CD1 LEU q 13 215.436 11.233 234.216 1.00 35.61 ATOM 124 CD2 LEU q 13 213.049 10.733 233.687 1.00 36.24 ATOM 125 N LYS q 14 213.841 11.910 229.339 1.00 35.79 ATOM 126 CA LYS q 14 213.504 13.160 228.648 1.00 36.80 ATOM 127 C LYS q 14 212.129 13.159 227.959 1.00 37.38 ATOM 128 O LYS q 14 211.325 14.058 228.180 1.00 37.91 ATOM 129 CB LYS q 14 214.589 13.488 227.635 1.00 37.20 ATOM 130 CG LYS q 14 215.551 14.502 228.150 1.00 37.25 ATOM 131 CD LYS q 14 216.864 14.469 227.376 1.00 37.35 ATOM 132 CE LYS q 14 217.411 15.891 227.126 1.00 37.95 ATOM 133 NZ LYS q 14 218.357 15.988 225.960 1.00 38.15 ATOM 134 N ARG q 15 211.874 12.156 227.124 1.00 37.40 ATOM 135 CA ARG q 15 210.582 12.014 226.478 1.00 38.04 ATOM 136 C ARG q 15 209.445 11.931 227.510 1.00 37.85 ATOM 137 O ARG q 15 208.413 12.586 227.342 1.00 38.61 ATOM 138 CB ARG q 15 210.569 10.781 225.588 1.00 37.99 ATOM 139 CG ARG q 15 211.129 11.004 224.202 1.00 38.78 ATOM 140 CD ARG q 15 210.643 9.919 223.211 1.00 39.15 ATOM 141 NE ARG q 15 211.133 8.580 223.559 1.00 38.16 ATOM 142 CZ ARG q 15 212.417 8.215 223.488 1.00 37.65 ATOM 143 NH1 ARG q 15 213.328 9.105 223.078 1.00 38.08 ATOM 144 NH2 ARG q 15 212.795 6.962 223.825 1.00 36.75 ATOM 145 N LYS q 16 209.625 11.127 228.563 1.00 38.02 ATOM 146 CA LYS q 16 208.721 11.166 229.699 1.00 37.92 ATOM 147 C LYS q 16 208.534 12.611 230.235 1.00 38.42 ATOM 148 O LYS q 16 207.408 13.087 230.367 1.00 39.04 ATOM 149 CB LYS q 16 209.224 10.250 230.807 1.00 37.01 ATOM 150 CG LYS q 16 208.345 8.989 231.033 1.00 36.92 ATOM 151 CD LYS q 16 208.842 8.138 232.286 1.00 36.31 ATOM 152 CE LYS q 16 208.680 8.864 233.686 1.00 36.56 ATOM 153 NZ LYS q 16 209.763 8.554 234.679 1.00 36.06 ATOM 154 N ARG q 17 209.606 13.343 230.512 1.00 37.18 ATOM 155 CA ARG q 17 209.406 14.694 231.009 1.00 37.73 ATOM 156 C ARG q 17 208.871 15.616 229.939 1.00 38.72 ATOM 157 O ARG q 17 208.115 16.506 230.246 1.00 39.31 ATOM 158 CB ARG q 17 210.685 15.254 231.608 1.00 37.46 ATOM 159 CG ARG q 17 211.110 14.431 232.832 1.00 36.66 ATOM 160 CD ARG q 17 211.837 15.224 233.892 1.00 36.72 ATOM 161 NE ARG q 17 213.229 15.430 233.532 1.00 36.58 ATOM 162 CZ ARG q 17 214.262 14.896 234.172 1.00 35.81 ATOM 163 NH1 ARG q 17 214.096 14.108 235.229 1.00 35.26 ATOM 164 NH2 ARG q 17 215.482 15.180 233.761 1.00 35.74 ATOM 165 N ARG q 18 209.223 15.408 228.679 1.00 37.74 ATOM 166 CA ARG q 18 208.663 16.242 227.638 1.00 38.84 ATOM 167 C ARG q 18 207.164 15.938 227.521 1.00 39.33 ATOM 168 O ARG q 18 206.316 16.854 227.380 1.00 40.21 ATOM 169 CB ARG q 18 209.403 16.019 226.325 1.00 39.14 ATOM 170 CG ARG q 18 208.688 16.558 225.089 1.00 40.46 ATOM 171 CD ARG q 18 209.587 17.437 224.183 1.00 41.06 ATOM 172 NE ARG q 18 208.783 18.192 223.194 1.00 42.46 ATOM 173 CZ ARG q 18 209.068 18.324 221.881 1.00 43.43 ATOM 174 NH1 ARG q 18 208.224 19.031 221.091 1.00 44.51 ATOM 175 NH2 ARG q 18 210.181 17.761 221.344 1.00 43.20 ATOM 176 N LYS q 19 206.843 14.646 227.623 1.00 39.16 ATOM 177 CA LYS q 19 205.449 14.172 227.552 1.00 39.56 ATOM 178 C LYS q 19 204.648 14.629 228.754 1.00 39.61 ATOM 179 O LYS q 19 203.522 15.082 228.584 1.00 40.40 ATOM 180 CB LYS q 19 205.371 12.639 227.426 1.00 38.96 ATOM 181 CG LYS q 19 204.793 12.129 226.086 1.00 39.69 ATOM 182 CD LYS q 19 205.489 10.849 225.555 1.00 39.16 ATOM 183 CE LYS q 19 204.658 10.082 224.475 1.00 39.85 ATOM 184 NZ LYS q 19 203.392 9.356 225.008 1.00 39.79 ATOM 185 N VAL q 20 205.209 14.539 229.958 1.00 39.06 ATOM 186 CA VAL q 20 204.508 15.086 231.123 1.00 39.22 ATOM 187 C VAL q 20 204.271 16.606 231.021 1.00 39.73 ATOM 188 O VAL q 20 203.192 17.078 231.319 1.00 40.51 ATOM 189 CB VAL q 20 205.231 14.801 232.439 1.00 38.26 ATOM 190 CG1 VAL q 20 204.429 15.362 233.562 1.00 38.56 ATOM 191 CG2 VAL q 20 205.397 13.321 232.660 1.00 37.91 ATOM 192 N ARG q 21 205.257 17.379 230.584 1.00 38.22 ATOM 193 CA ARG q 21 205.051 18.824 230.472 1.00 38.83 ATOM 194 C ARG q 21 203.933 19.146 229.443 1.00 40.20 ATOM 195 O ARG q 21 203.109 20.042 229.641 1.00 41.02 ATOM 196 CB ARG q 21 206.370 19.521 230.117 1.00 38.40 ATOM 197 CG ARG q 21 206.258 21.023 230.071 1.00 39.06 ATOM 198 CD ARG q 21 207.384 21.720 230.774 1.00 38.42 ATOM 199 NE ARG q 21 208.354 22.335 229.871 1.00 38.66 ATOM 200 CZ ARG q 21 208.568 23.639 229.789 1.00 39.25 ATOM 201 NH1 ARG q 21 207.893 24.473 230.551 1.00 39.61 ATOM 202 NH2 ARG q 21 209.456 24.108 228.942 1.00 39.58 ATOM 203 N ALA q 22 203.908 18.385 228.355 1.00 42.16 ATOM 204 CA ALA q 22 202.873 18.489 227.328 1.00 43.16 ATOM 205 C ALA q 22 201.503 18.371 227.909 1.00 43.49 ATOM 206 O ALA q 22 200.599 19.046 227.454 1.00 44.48 ATOM 207 CB ALA q 22 203.054 17.417 226.276 1.00 43.03 ATOM 208 N ARG q 23 201.340 17.478 228.886 1.00 44.72 ATOM 209 CA ARG q 23 200.049 17.271 229.561 1.00 45.06 ATOM 210 C ARG q 23 199.396 18.577 229.992 1.00 45.90 ATOM 211 O ARG q 23 198.199 18.823 229.840 1.00 46.72 ATOM 212 CB ARG q 23 200.240 16.402 230.787 1.00 44.20 ATOM 213 CG ARG q 23 198.973 16.110 231.447 1.00 44.57 ATOM 214 CD ARG q 23 198.761 14.656 231.358 1.00 44.11 ATOM 215 NE ARG q 23 199.405 14.068 232.508 1.00 43.31 ATOM 216 CZ ARG q 23 198.739 13.808 233.636 1.00 43.49 ATOM 217 NH1 ARG q 23 197.416 14.107 233.653 1.00 44.38 ATOM 218 NH2 ARG q 23 199.376 13.261 234.718 1.00 42.91 ATOM 219 N SER q 24 200.259 19.416 230.525 1.00 44.83 ATOM 220 CA SER q 24 199.932 20.684 231.111 1.00 45.46 ATOM 221 C SER q 24 199.744 21.678 230.018 1.00 46.44 ATOM 222 O SER q 24 199.430 22.839 230.293 1.00 47.19 ATOM 223 CB SER q 24 201.067 21.102 232.032 1.00 44.81 ATOM 224 OG SER q 24 201.921 19.965 232.298 1.00 43.73 ATOM 225 N LYS q 25 199.951 21.194 228.786 1.00 48.32 ATOM 226 CA LYS q 25 200.038 21.983 227.540 1.00 49.19 ATOM 227 C LYS q 25 201.368 22.773 227.452 1.00 49.09 ATOM 228 O LYS q 25 202.204 22.760 228.381 1.00 48.33 ATOM 229 CB LYS q 25 198.817 22.921 227.394 1.00 50.32 ATOM 230 CG LYS q 25 197.444 22.188 227.342 1.00 50.62 ATOM 231 CD LYS q 25 197.261 21.373 226.049 1.00 50.73 ATOM 232 CE LYS q 25 195.802 21.016 225.807 1.00 51.39 ATOM 233 NZ LYS q 25 195.319 21.131 224.352 1.00 52.29 TER