HEADER RIBOSOME 24-JUL-14 4ULB TITLE Crystal structure of Nagilactone C bound to the yeast 80S ribosome COMPND MOL_ID: 27; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L41-A; COMPND 3 CHAIN: a; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS DBREF 4ULB a 1 25 PDB 4U52 4U52 1 25 SEQRES 1 a 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 a 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET a 1 -48.051 -3.538 78.502 1.00 47.64 ATOM 2 CA MET a 1 -47.288 -4.110 79.599 1.00 47.19 ATOM 3 C MET a 1 -47.875 -3.647 80.937 1.00 46.85 ATOM 4 O MET a 1 -48.524 -2.597 80.999 1.00 46.72 ATOM 5 CB MET a 1 -45.801 -3.738 79.465 1.00 46.46 ATOM 6 CG MET a 1 -45.464 -2.264 79.583 1.00 45.60 ATOM 7 SD MET a 1 -43.722 -1.899 79.123 1.00 44.93 ATOM 8 CE MET a 1 -42.922 -3.298 79.937 1.00 45.17 ATOM 9 N ARG a 2 -47.673 -4.452 81.983 1.00 45.90 ATOM 10 CA ARG a 2 -48.065 -4.109 83.339 1.00 45.75 ATOM 11 C ARG a 2 -47.768 -2.655 83.519 1.00 45.09 ATOM 12 O ARG a 2 -46.779 -2.178 83.017 1.00 44.45 ATOM 13 CB ARG a 2 -47.309 -4.968 84.359 1.00 45.47 ATOM 14 CG ARG a 2 -47.349 -4.464 85.816 1.00 45.14 ATOM 15 CD ARG a 2 -48.157 -5.342 86.794 1.00 45.78 ATOM 16 NE ARG a 2 -47.333 -6.217 87.642 1.00 45.63 ATOM 17 CZ ARG a 2 -47.380 -6.248 88.973 1.00 45.61 ATOM 18 NH1 ARG a 2 -48.199 -5.441 89.627 1.00 45.70 ATOM 19 NH2 ARG a 2 -46.610 -7.089 89.648 1.00 45.62 ATOM 20 N ALA a 3 -48.653 -1.926 84.167 1.00 45.59 ATOM 21 CA ALA a 3 -48.484 -0.500 84.317 1.00 45.21 ATOM 22 C ALA a 3 -47.144 -0.197 84.949 1.00 44.32 ATOM 23 O ALA a 3 -46.420 0.688 84.478 1.00 43.84 ATOM 24 CB ALA a 3 -49.618 0.086 85.141 1.00 45.80 ATOM 25 N LYS a 4 -46.782 -0.952 85.985 1.00 44.59 ATOM 26 CA LYS a 4 -45.624 -0.591 86.808 1.00 44.15 ATOM 27 C LYS a 4 -44.300 -0.953 86.142 1.00 43.92 ATOM 28 O LYS a 4 -43.299 -0.280 86.330 1.00 43.55 ATOM 29 CB LYS a 4 -45.713 -1.237 88.198 1.00 44.40 ATOM 30 CG LYS a 4 -45.401 -2.695 88.265 1.00 44.79 ATOM 31 CD LYS a 4 -44.799 -3.022 89.610 1.00 44.86 ATOM 32 CE LYS a 4 -45.640 -2.466 90.752 1.00 44.96 ATOM 33 NZ LYS a 4 -45.147 -2.768 92.156 1.00 45.20 ATOM 34 N TRP a 5 -44.293 -2.004 85.345 1.00 44.67 ATOM 35 CA TRP a 5 -43.095 -2.367 84.629 1.00 44.57 ATOM 36 C TRP a 5 -42.829 -1.327 83.556 1.00 44.15 ATOM 37 O TRP a 5 -41.710 -1.208 83.049 1.00 43.92 ATOM 38 CB TRP a 5 -43.216 -3.761 84.017 1.00 45.23 ATOM 39 CG TRP a 5 -43.384 -4.929 84.989 1.00 45.73 ATOM 40 CD1 TRP a 5 -43.952 -6.127 84.695 1.00 46.46 ATOM 41 CD2 TRP a 5 -42.978 -5.016 86.374 1.00 45.64 ATOM 42 NE1 TRP a 5 -43.932 -6.953 85.794 1.00 46.76 ATOM 43 CE2 TRP a 5 -43.340 -6.293 86.836 1.00 46.28 ATOM 44 CE3 TRP a 5 -42.368 -4.139 87.265 1.00 45.22 ATOM 45 CZ2 TRP a 5 -43.112 -6.714 88.151 1.00 46.46 ATOM 46 CZ3 TRP a 5 -42.128 -4.571 88.564 1.00 45.48 ATOM 47 CH2 TRP a 5 -42.525 -5.838 88.998 1.00 46.05 ATOM 48 N ARG a 6 -43.857 -0.564 83.220 1.00 44.08 ATOM 49 CA ARG a 6 -43.699 0.527 82.283 1.00 43.73 ATOM 50 C ARG a 6 -43.277 1.805 83.008 1.00 43.24 ATOM 51 O ARG a 6 -42.519 2.629 82.488 1.00 42.85 ATOM 52 CB ARG a 6 -44.993 0.749 81.513 1.00 44.17 ATOM 53 CG ARG a 6 -44.951 1.954 80.638 1.00 43.89 ATOM 54 CD ARG a 6 -45.809 1.738 79.453 1.00 44.56 ATOM 55 NE ARG a 6 -46.550 2.947 79.107 1.00 44.65 ATOM 56 CZ ARG a 6 -45.992 4.035 78.571 1.00 44.22 ATOM 57 NH1 ARG a 6 -44.663 4.066 78.325 1.00 43.63 ATOM 58 NH2 ARG a 6 -46.769 5.096 78.294 1.00 44.40 ATOM 59 N LYS a 7 -43.791 1.984 84.212 1.00 42.22 ATOM 60 CA LYS a 7 -43.255 3.008 85.078 1.00 42.02 ATOM 61 C LYS a 7 -41.749 2.770 85.248 1.00 41.48 ATOM 62 O LYS a 7 -40.964 3.701 85.213 1.00 41.24 ATOM 63 CB LYS a 7 -43.978 2.977 86.419 1.00 42.47 ATOM 64 CG LYS a 7 -43.630 4.084 87.372 1.00 42.55 ATOM 65 CD LYS a 7 -44.056 3.658 88.738 1.00 42.92 ATOM 66 CE LYS a 7 -44.477 4.833 89.533 1.00 43.43 ATOM 67 NZ LYS a 7 -45.638 5.441 88.860 1.00 43.88 ATOM 68 N LYS a 8 -41.355 1.508 85.407 1.00 42.63 ATOM 69 CA LYS a 8 -39.945 1.159 85.551 1.00 42.30 ATOM 70 C LYS a 8 -39.161 1.254 84.234 1.00 41.93 ATOM 71 O LYS a 8 -37.978 1.600 84.239 1.00 41.64 ATOM 72 CB LYS a 8 -39.791 -0.243 86.119 1.00 42.54 ATOM 73 CG LYS a 8 -38.365 -0.590 86.434 1.00 42.41 ATOM 74 CD LYS a 8 -38.177 -2.057 86.308 1.00 42.71 ATOM 75 CE LYS a 8 -38.660 -2.759 87.522 1.00 43.15 ATOM 76 NZ LYS a 8 -37.592 -2.945 88.552 1.00 43.34 ATOM 77 N ARG a 9 -39.814 0.919 83.120 1.00 42.58 ATOM 78 CA ARG a 9 -39.283 1.222 81.799 1.00 42.36 ATOM 79 C ARG a 9 -38.765 2.630 81.755 1.00 41.89 ATOM 80 O ARG a 9 -37.593 2.844 81.513 1.00 41.71 ATOM 81 CB ARG a 9 -40.341 1.059 80.720 1.00 42.58 ATOM 82 CG ARG a 9 -40.249 -0.224 79.958 1.00 43.13 ATOM 83 CD ARG a 9 -39.491 0.003 78.702 1.00 43.01 ATOM 84 NE ARG a 9 -40.317 -0.143 77.507 1.00 43.48 ATOM 85 CZ ARG a 9 -40.675 -1.299 76.955 1.00 44.32 ATOM 86 NH1 ARG a 9 -40.325 -2.458 77.490 1.00 44.75 ATOM 87 NH2 ARG a 9 -41.389 -1.287 75.852 1.00 44.84 ATOM 88 N THR a 10 -39.626 3.603 82.001 1.00 41.17 ATOM 89 CA THR a 10 -39.218 4.955 81.708 1.00 40.85 ATOM 90 C THR a 10 -38.446 5.591 82.869 1.00 40.92 ATOM 91 O THR a 10 -37.860 6.658 82.715 1.00 40.79 ATOM 92 CB THR a 10 -40.417 5.803 81.294 1.00 40.94 ATOM 93 OG1 THR a 10 -40.995 6.435 82.435 1.00 41.20 ATOM 94 CG2 THR a 10 -41.456 4.933 80.575 1.00 41.26 ATOM 95 N ARG a 11 -38.396 4.927 84.020 1.00 40.73 ATOM 96 CA ARG a 11 -37.462 5.369 85.048 1.00 40.98 ATOM 97 C ARG a 11 -36.022 5.185 84.532 1.00 40.85 ATOM 98 O ARG a 11 -35.171 6.086 84.600 1.00 40.91 ATOM 99 CB ARG a 11 -37.672 4.596 86.340 1.00 41.44 ATOM 100 CG ARG a 11 -38.137 5.453 87.522 1.00 41.86 ATOM 101 CD ARG a 11 -39.637 5.462 87.668 1.00 41.88 ATOM 102 NE ARG a 11 -40.090 6.419 88.675 1.00 42.33 ATOM 103 CZ ARG a 11 -40.695 6.095 89.822 1.00 42.81 ATOM 104 NH1 ARG a 11 -40.908 4.831 90.127 1.00 42.86 ATOM 105 NH2 ARG a 11 -41.081 7.035 90.670 1.00 43.29 ATOM 106 N ARG a 12 -35.777 3.990 84.000 1.00 40.99 ATOM 107 CA ARG a 12 -34.517 3.637 83.403 1.00 40.76 ATOM 108 C ARG a 12 -34.238 4.595 82.287 1.00 40.44 ATOM 109 O ARG a 12 -33.163 5.138 82.172 1.00 40.35 ATOM 110 CB ARG a 12 -34.566 2.219 82.865 1.00 40.77 ATOM 111 CG ARG a 12 -34.818 1.172 83.864 1.00 41.14 ATOM 112 CD ARG a 12 -34.933 -0.151 83.193 1.00 41.30 ATOM 113 NE ARG a 12 -35.095 -1.206 84.182 1.00 41.75 ATOM 114 CZ ARG a 12 -35.428 -2.457 83.891 1.00 42.11 ATOM 115 NH1 ARG a 12 -35.642 -2.806 82.633 1.00 42.11 ATOM 116 NH2 ARG a 12 -35.555 -3.354 84.855 1.00 42.58 ATOM 117 N LEU a 13 -35.252 4.790 81.464 1.00 41.06 ATOM 118 CA LEU a 13 -35.137 5.569 80.254 1.00 40.67 ATOM 119 C LEU a 13 -34.605 6.948 80.574 1.00 40.62 ATOM 120 O LEU a 13 -33.824 7.504 79.820 1.00 40.39 ATOM 121 CB LEU a 13 -36.504 5.647 79.562 1.00 40.63 ATOM 122 CG LEU a 13 -36.675 6.066 78.097 1.00 40.37 ATOM 123 CD1 LEU a 13 -36.178 7.450 77.882 1.00 40.23 ATOM 124 CD2 LEU a 13 -35.996 5.095 77.109 1.00 40.35 ATOM 125 N LYS a 14 -35.041 7.487 81.702 1.00 40.74 ATOM 126 CA LYS a 14 -34.677 8.834 82.071 1.00 40.94 ATOM 127 C LYS a 14 -33.248 8.849 82.608 1.00 41.26 ATOM 128 O LYS a 14 -32.477 9.777 82.318 1.00 41.33 ATOM 129 CB LYS a 14 -35.653 9.406 83.108 1.00 41.36 ATOM 130 CG LYS a 14 -37.057 9.610 82.595 1.00 41.19 ATOM 131 CD LYS a 14 -37.770 10.824 83.212 1.00 41.61 ATOM 132 CE LYS a 14 -38.138 10.622 84.653 1.00 42.15 ATOM 133 NZ LYS a 14 -38.881 9.349 84.779 1.00 42.00 ATOM 134 N ARG a 15 -32.895 7.828 83.389 1.00 41.02 ATOM 135 CA ARG a 15 -31.566 7.772 83.983 1.00 41.58 ATOM 136 C ARG a 15 -30.523 7.849 82.896 1.00 41.34 ATOM 137 O ARG a 15 -29.506 8.539 83.057 1.00 41.75 ATOM 138 CB ARG a 15 -31.372 6.502 84.781 1.00 42.00 ATOM 139 CG ARG a 15 -31.278 6.690 86.279 1.00 42.80 ATOM 140 CD ARG a 15 -30.480 5.511 86.836 1.00 43.33 ATOM 141 NE ARG a 15 -30.974 4.265 86.254 1.00 42.91 ATOM 142 CZ ARG a 15 -31.889 3.488 86.833 1.00 43.03 ATOM 143 NH1 ARG a 15 -32.384 3.809 88.039 1.00 43.55 ATOM 144 NH2 ARG a 15 -32.286 2.375 86.217 1.00 42.74 ATOM 145 N LYS a 16 -30.804 7.162 81.784 1.00 41.13 ATOM 146 CA LYS a 16 -29.934 7.110 80.619 1.00 40.82 ATOM 147 C LYS a 16 -29.809 8.455 79.928 1.00 40.54 ATOM 148 O LYS a 16 -28.704 8.895 79.590 1.00 40.68 ATOM 149 CB LYS a 16 -30.448 6.082 79.626 1.00 40.39 ATOM 150 CG LYS a 16 -29.413 5.028 79.244 1.00 40.63 ATOM 151 CD LYS a 16 -29.302 4.891 77.722 1.00 40.19 ATOM 152 CE LYS a 16 -27.841 4.766 77.296 1.00 40.42 ATOM 153 NZ LYS a 16 -27.062 5.916 77.831 1.00 40.56 ATOM 154 N ARG a 17 -30.938 9.114 79.708 1.00 40.11 ATOM 155 CA ARG a 17 -30.893 10.435 79.095 1.00 39.97 ATOM 156 C ARG a 17 -30.225 11.345 80.112 1.00 40.65 ATOM 157 O ARG a 17 -29.395 12.143 79.754 1.00 40.78 ATOM 158 CB ARG a 17 -32.308 10.922 78.667 1.00 40.05 ATOM 159 CG ARG a 17 -33.165 9.794 78.002 1.00 39.79 ATOM 160 CD ARG a 17 -34.191 10.185 76.944 1.00 39.86 ATOM 161 NE ARG a 17 -35.463 10.583 77.545 1.00 40.35 ATOM 162 CZ ARG a 17 -36.685 10.405 77.036 1.00 40.61 ATOM 163 NH1 ARG a 17 -36.905 9.768 75.885 1.00 40.48 ATOM 164 NH2 ARG a 17 -37.710 10.855 77.726 1.00 41.16 ATOM 165 N ARG a 18 -30.547 11.161 81.390 1.00 40.07 ATOM 166 CA ARG a 18 -29.941 11.934 82.475 1.00 40.89 ATOM 167 C ARG a 18 -28.432 11.797 82.393 1.00 41.18 ATOM 168 O ARG a 18 -27.715 12.787 82.546 1.00 41.66 ATOM 169 CB ARG a 18 -30.466 11.478 83.855 1.00 41.38 ATOM 170 CG ARG a 18 -30.266 12.473 85.036 1.00 42.29 ATOM 171 CD ARG a 18 -30.715 11.875 86.381 1.00 42.78 ATOM 172 NE ARG a 18 -32.038 11.229 86.254 1.00 42.28 ATOM 173 CZ ARG a 18 -32.490 10.239 87.043 1.00 42.39 ATOM 174 NH1 ARG a 18 -31.712 9.793 88.037 1.00 43.01 ATOM 175 NH2 ARG a 18 -33.713 9.690 86.849 1.00 41.96 ATOM 176 N LYS a 19 -27.959 10.580 82.119 1.00 40.42 ATOM 177 CA LYS a 19 -26.526 10.334 81.911 1.00 40.74 ATOM 178 C LYS a 19 -25.997 11.021 80.635 1.00 40.32 ATOM 179 O LYS a 19 -25.149 11.895 80.686 1.00 40.75 ATOM 180 CB LYS a 19 -26.236 8.825 81.870 1.00 40.72 ATOM 181 CG LYS a 19 -25.361 8.322 83.025 1.00 41.70 ATOM 182 CD LYS a 19 -26.115 7.319 83.968 1.00 41.90 ATOM 183 CE LYS a 19 -25.387 7.095 85.366 1.00 43.03 ATOM 184 NZ LYS a 19 -24.943 5.663 85.727 1.00 43.59 ATOM 185 N VAL a 20 -26.535 10.643 79.493 1.00 40.98 ATOM 186 CA VAL a 20 -26.049 11.136 78.217 1.00 40.53 ATOM 187 C VAL a 20 -25.982 12.654 78.150 1.00 40.74 ATOM 188 O VAL a 20 -25.221 13.218 77.386 1.00 40.66 ATOM 189 CB VAL a 20 -26.943 10.589 77.089 1.00 39.69 ATOM 190 CG1 VAL a 20 -26.466 11.028 75.712 1.00 39.21 ATOM 191 CG2 VAL a 20 -26.951 9.072 77.153 1.00 39.67 ATOM 192 N ARG a 21 -26.767 13.340 78.957 1.00 39.89 ATOM 193 CA ARG a 21 -26.746 14.785 78.870 1.00 40.36 ATOM 194 C ARG a 21 -25.558 15.300 79.667 1.00 41.13 ATOM 195 O ARG a 21 -24.796 16.132 79.174 1.00 41.38 ATOM 196 CB ARG a 21 -28.056 15.393 79.355 1.00 40.71 ATOM 197 CG ARG a 21 -28.799 16.175 78.294 1.00 40.59 ATOM 198 CD ARG a 21 -30.043 16.881 78.850 1.00 41.19 ATOM 199 NE ARG a 21 -29.973 18.331 78.696 1.00 41.93 ATOM 200 CZ ARG a 21 -30.765 19.188 79.323 1.00 42.79 ATOM 201 NH1 ARG a 21 -30.620 20.486 79.140 1.00 43.58 ATOM 202 NH2 ARG a 21 -31.692 18.748 80.139 1.00 42.96 ATOM 203 N ALA a 22 -25.384 14.785 80.878 1.00 41.50 ATOM 204 CA ALA a 22 -24.229 15.136 81.700 1.00 42.40 ATOM 205 C ALA a 22 -22.941 15.148 80.895 1.00 42.33 ATOM 206 O ALA a 22 -22.177 16.094 80.977 1.00 43.05 ATOM 207 CB ALA a 22 -24.100 14.194 82.839 1.00 42.73 ATOM 208 N ARG a 23 -22.727 14.096 80.106 1.00 42.71 ATOM 209 CA ARG a 23 -21.686 13.977 79.073 1.00 42.54 ATOM 210 C ARG a 23 -21.241 15.237 78.355 1.00 42.56 ATOM 211 O ARG a 23 -20.326 15.208 77.550 1.00 42.50 ATOM 212 CB ARG a 23 -22.192 13.041 77.986 1.00 41.58 ATOM 213 CG ARG a 23 -21.691 11.671 77.981 1.00 41.64 ATOM 214 CD ARG a 23 -21.591 11.236 76.566 1.00 40.84 ATOM 215 NE ARG a 23 -20.838 10.007 76.502 1.00 41.03 ATOM 216 CZ ARG a 23 -19.622 9.888 75.968 1.00 41.22 ATOM 217 NH1 ARG a 23 -19.024 8.708 76.003 1.00 41.36 ATOM 218 NH2 ARG a 23 -18.995 10.920 75.401 1.00 41.28 ATOM 219 N SER a 24 -21.927 16.335 78.589 1.00 45.13 ATOM 220 CA SER a 24 -21.820 17.469 77.709 1.00 45.03 ATOM 221 C SER a 24 -22.121 18.789 78.433 1.00 45.76 ATOM 222 O SER a 24 -22.126 19.858 77.816 1.00 45.83 ATOM 223 CB SER a 24 -22.767 17.257 76.533 1.00 43.96 ATOM 224 OG SER a 24 -23.411 18.461 76.177 1.00 43.97 ATOM 225 N LYS a 25 -22.373 18.708 79.737 1.00 45.09 ATOM 226 CA LYS a 25 -22.584 19.898 80.539 1.00 45.94 ATOM 227 C LYS a 25 -21.510 20.956 80.300 1.00 46.58 ATOM 228 O LYS a 25 -21.789 22.153 80.404 1.00 47.10 ATOM 229 CB LYS a 25 -22.616 19.552 82.015 1.00 46.64 ATOM 230 CG LYS a 25 -23.645 18.552 82.375 1.00 46.11 ATOM 231 CD LYS a 25 -23.703 18.385 83.903 1.00 46.91 ATOM 232 CE LYS a 25 -22.301 18.422 84.549 1.00 47.78 ATOM 233 NZ LYS a 25 -22.375 18.062 86.001 1.00 48.52 TER