HEADER RIBOSOME 24-MAR-09 4V5D TITLE Structure of the Thermus thermophilus 70S ribosome in complex with TITLE 2 mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. COMPND MOL_ID: 29; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L31; COMPND 3 CHAIN: B4, D4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.50 ANGSTORMS DBREF 4V5D D 27 97 UNP Q5SJE1 RL31_THET8 1 71 SEQRES 1 D4 31 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 D4 31 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 D4 31 CYS SER LYS CYS HIS ATOM 1 N VAL D 36 -124.935 160.712 119.731 1.00158.26 ATOM 2 CA VAL D 36 -126.106 161.359 119.058 1.00183.40 ATOM 3 C VAL D 36 -127.001 160.350 118.327 1.00187.21 ATOM 4 O VAL D 36 -126.555 159.256 117.979 1.00183.16 ATOM 5 CB VAL D 36 -125.637 162.408 118.038 1.00 99.94 ATOM 6 CG1 VAL D 36 -124.820 163.487 118.738 1.00 91.33 ATOM 7 CG2 VAL D 36 -124.835 161.728 116.940 1.00 89.94 ATOM 8 N PRO D 37 -128.273 160.721 118.062 1.00131.90 ATOM 9 CA PRO D 37 -129.226 159.844 117.373 1.00128.83 ATOM 10 C PRO D 37 -128.704 159.363 116.033 1.00125.41 ATOM 11 O PRO D 37 -128.007 160.097 115.331 1.00102.67 ATOM 12 CB PRO D 37 -130.463 160.724 117.230 1.00150.12 ATOM 13 CG PRO D 37 -129.878 162.088 117.095 1.00149.80 ATOM 14 CD PRO D 37 -128.837 162.077 118.190 1.00128.10 ATOM 15 N ALA D 38 -129.052 158.127 115.685 1.00112.44 ATOM 16 CA ALA D 38 -128.611 157.528 114.434 1.00111.70 ATOM 17 C ALA D 38 -129.564 156.442 113.943 1.00107.92 ATOM 18 O ALA D 38 -130.325 155.870 114.722 1.00103.27 ATOM 19 CB ALA D 38 -127.220 156.952 114.609 1.00105.84 ATOM 20 N ARG D 39 -129.503 156.166 112.643 1.00164.64 ATOM 21 CA ARG D 39 -130.349 155.160 112.002 1.00168.61 ATOM 22 C ARG D 39 -129.463 154.029 111.490 1.00169.91 ATOM 23 O ARG D 39 -128.277 154.231 111.235 1.00165.47 ATOM 24 CB ARG D 39 -131.087 155.779 110.811 1.00191.65 ATOM 25 CG ARG D 39 -131.330 157.276 110.936 1.00196.28 ATOM 26 CD ARG D 39 -131.680 157.892 109.591 1.00197.46 ATOM 27 NE ARG D 39 -132.940 157.382 109.060 1.00197.46 ATOM 28 CZ ARG D 39 -134.121 157.560 109.643 1.00194.96 ATOM 29 NH1 ARG D 39 -134.208 158.238 110.781 1.00187.60 ATOM 30 NH2 ARG D 39 -135.218 157.064 109.087 1.00190.01 ATOM 31 N ILE D 40 -130.033 152.840 111.338 1.00163.24 ATOM 32 CA ILE D 40 -129.266 151.708 110.834 1.00158.02 ATOM 33 C ILE D 40 -129.990 151.083 109.651 1.00154.29 ATOM 34 O ILE D 40 -131.050 150.475 109.802 1.00151.69 ATOM 35 CB ILE D 40 -129.035 150.622 111.920 1.00136.07 ATOM 36 CG1 ILE D 40 -128.150 151.171 113.043 1.00133.86 ATOM 37 CG2 ILE D 40 -128.346 149.412 111.313 1.00125.72 ATOM 38 CD1 ILE D 40 -128.832 152.182 113.954 1.00123.50 ATOM 39 N ILE D 41 -129.408 151.255 108.470 1.00193.42 ATOM 40 CA ILE D 41 -129.962 150.722 107.231 1.00197.64 ATOM 41 C ILE D 41 -129.452 149.294 107.053 1.00197.24 ATOM 42 O ILE D 41 -128.263 149.080 106.847 1.00190.76 ATOM 43 CB ILE D 41 -129.515 151.585 106.021 1.00148.23 ATOM 44 CG1 ILE D 41 -129.802 153.065 106.303 1.00150.70 ATOM 45 CG2 ILE D 41 -130.209 151.123 104.757 1.00144.34 ATOM 46 CD1 ILE D 41 -131.217 153.359 106.794 1.00140.23 ATOM 47 N CYS D 42 -130.349 148.318 107.131 1.00113.11 ATOM 48 CA CYS D 42 -129.954 146.921 106.997 1.00115.06 ATOM 49 C CYS D 42 -129.948 146.399 105.574 1.00115.44 ATOM 50 O CYS D 42 -130.076 147.156 104.613 1.00117.16 ATOM 51 CB CYS D 42 -130.877 146.031 107.823 1.00153.06 ATOM 52 SG CYS D 42 -130.801 146.342 109.572 1.00142.68 ATOM 53 N GLY D 43 -129.781 145.084 105.465 1.00146.54 ATOM 54 CA GLY D 43 -129.791 144.416 104.180 1.00145.36 ATOM 55 C GLY D 43 -131.165 143.786 104.052 1.00147.70 ATOM 56 O GLY D 43 -131.604 143.407 102.962 1.00138.41 ATOM 57 N CYS D 44 -131.842 143.682 105.196 1.00199.70 ATOM 58 CA CYS D 44 -133.188 143.122 105.279 1.00200.00 ATOM 59 C CYS D 44 -134.143 144.197 105.801 1.00200.00 ATOM 60 O CYS D 44 -134.741 144.051 106.870 1.00200.00 ATOM 61 CB CYS D 44 -133.206 141.905 106.214 1.00183.34 ATOM 62 SG CYS D 44 -132.742 142.240 107.932 1.00200.00 ATOM 63 N GLY D 45 -134.270 145.278 105.034 1.00133.54 ATOM 64 CA GLY D 45 -135.139 146.378 105.413 1.00145.24 ATOM 65 C GLY D 45 -134.866 146.848 106.826 1.00131.54 ATOM 66 O GLY D 45 -133.908 147.581 107.072 1.00131.69 ATOM 67 N ASN D 46 -135.726 146.417 107.745 1.00137.63 ATOM 68 CA ASN D 46 -135.635 146.748 109.162 1.00140.92 ATOM 69 C ASN D 46 -134.663 147.875 109.482 1.00155.90 ATOM 70 O ASN D 46 -133.455 147.725 109.312 1.00165.43 ATOM 71 CB ASN D 46 -135.234 145.502 109.947 1.00135.05 ATOM 72 CG ASN D 46 -135.101 145.765 111.432 1.00136.19 ATOM 73 OD1 ASN D 46 -134.649 144.901 112.184 1.00123.35 ATOM 74 ND2 ASN D 46 -135.499 146.960 111.866 1.00140.38 ATOM 75 N VAL D 47 -135.186 148.999 109.956 1.00137.44 ATOM 76 CA VAL D 47 -134.326 150.122 110.306 1.00140.11 ATOM 77 C VAL D 47 -134.423 150.455 111.790 1.00142.45 ATOM 78 O VAL D 47 -135.448 150.947 112.271 1.00149.58 ATOM 79 CB VAL D 47 -134.660 151.372 109.464 1.00124.49 ATOM 80 CG1 VAL D 47 -133.828 152.567 109.937 1.00111.11 ATOM 81 CG2 VAL D 47 -134.370 151.086 107.997 1.00119.66 ATOM 82 N ILE D 48 -133.336 150.170 112.504 1.00141.39 ATOM 83 CA ILE D 48 -133.252 150.409 113.936 1.00144.76 ATOM 84 C ILE D 48 -132.786 151.826 114.184 1.00134.31 ATOM 85 O ILE D 48 -131.786 152.259 113.620 1.00126.91 ATOM 86 CB ILE D 48 -132.237 149.469 114.619 1.00117.73 ATOM 87 CG1 ILE D 48 -132.483 148.021 114.203 1.00103.38 ATOM 88 CG2 ILE D 48 -132.355 149.595 116.126 1.00108.89 ATOM 89 CD1 ILE D 48 -132.030 147.713 112.799 1.00 88.76 ATOM 90 N GLU D 49 -133.507 152.550 115.028 1.00132.94 ATOM 91 CA GLU D 49 -133.118 153.911 115.323 1.00139.65 ATOM 92 C GLU D 49 -132.556 153.985 116.730 1.00147.23 ATOM 93 O GLU D 49 -133.269 154.279 117.689 1.00139.21 ATOM 94 CB GLU D 49 -134.304 154.864 115.167 1.00196.98 ATOM 95 CG GLU D 49 -133.888 156.329 115.060 1.00198.81 ATOM 96 CD GLU D 49 -135.008 157.236 114.576 1.00200.00 ATOM 97 OE1 GLU D 49 -135.579 156.958 113.499 1.00200.00 ATOM 98 OE2 GLU D 49 -135.312 158.233 115.265 1.00195.51 ATOM 99 N THR D 50 -131.269 153.683 116.839 1.00200.00 ATOM 100 CA THR D 50 -130.573 153.733 118.113 1.00198.25 ATOM 101 C THR D 50 -129.796 155.033 118.084 1.00193.32 ATOM 102 O THR D 50 -130.243 156.011 117.487 1.00183.92 ATOM 103 CB THR D 50 -129.579 152.589 118.256 1.00133.14 ATOM 104 OG1 THR D 50 -128.437 152.853 117.434 1.00134.33 ATOM 105 CG2 THR D 50 -130.215 151.288 117.815 1.00115.73 ATOM 106 N TYR D 51 -128.629 155.050 118.717 1.00125.78 ATOM 107 CA TYR D 51 -127.829 156.262 118.741 1.00124.96 ATOM 108 C TYR D 51 -126.352 155.944 118.782 1.00125.51 ATOM 109 O TYR D 51 -125.962 154.818 119.100 1.00122.77 ATOM 110 CB TYR D 51 -128.209 157.110 119.952 1.00131.16 ATOM 111 CG TYR D 51 -129.678 157.033 120.266 1.00146.22 ATOM 112 CD1 TYR D 51 -130.214 155.904 120.884 1.00142.62 ATOM 113 CD2 TYR D 51 -130.546 158.062 119.906 1.00135.47 ATOM 114 CE1 TYR D 51 -131.573 155.796 121.131 1.00146.01 ATOM 115 CE2 TYR D 51 -131.915 157.963 120.155 1.00132.87 ATOM 116 CZ TYR D 51 -132.418 156.822 120.770 1.00147.19 ATOM 117 OH TYR D 51 -133.761 156.696 121.031 1.00145.54 ATOM 118 N SER D 52 -125.542 156.946 118.449 1.00200.00 ATOM 119 CA SER D 52 -124.088 156.823 118.442 1.00200.00 ATOM 120 C SER D 52 -123.454 158.024 117.751 1.00200.00 ATOM 121 O SER D 52 -123.446 159.143 118.276 1.00200.00 ATOM 122 CB SER D 52 -123.658 155.547 117.709 1.00 87.31 ATOM 123 OG SER D 52 -124.016 155.616 116.343 1.00 93.76 ATOM 124 N THR D 53 -122.919 157.758 116.565 1.00196.12 ATOM 125 CA THR D 53 -122.266 158.758 115.739 1.00194.04 ATOM 126 C THR D 53 -122.556 158.441 114.286 1.00194.91 ATOM 127 O THR D 53 -122.947 157.323 113.957 1.00184.48 ATOM 128 CB THR D 53 -120.752 158.745 115.947 1.00 92.30 ATOM 129 OG1 THR D 53 -120.381 157.527 116.608 1.00 97.68 ATOM 130 CG2 THR D 53 -120.321 159.965 116.778 1.00 72.19 ATOM 131 N LYS D 54 -122.350 159.429 113.422 1.00200.00 ATOM 132 CA LYS D 54 -122.603 159.277 111.996 1.00200.00 ATOM 133 C LYS D 54 -123.883 158.483 111.740 1.00200.00 ATOM 134 O LYS D 54 -123.842 157.273 111.524 1.00200.00 ATOM 135 CB LYS D 54 -121.403 158.611 111.308 1.00131.17 ATOM 136 CG LYS D 54 -120.916 157.296 111.917 1.00121.77 ATOM 137 CD LYS D 54 -119.741 156.750 111.101 1.00124.36 ATOM 138 CE LYS D 54 -119.280 155.371 111.562 1.00112.51 ATOM 139 NZ LYS D 54 -118.195 154.825 110.687 1.00109.51 ATOM 140 N PRO D 55 -125.043 159.166 111.774 1.00158.19 ATOM 141 CA PRO D 55 -126.373 158.577 111.553 1.00147.10 ATOM 142 C PRO D 55 -126.518 157.758 110.263 1.00143.95 ATOM 143 O PRO D 55 -127.605 157.279 109.934 1.00142.18 ATOM 144 CB PRO D 55 -127.296 159.795 111.589 1.00150.38 ATOM 145 CG PRO D 55 -126.623 160.672 112.611 1.00159.78 ATOM 146 CD PRO D 55 -125.165 160.577 112.191 1.00157.67 ATOM 147 N GLU D 56 -125.417 157.621 109.535 1.00200.00 ATOM 148 CA GLU D 56 -125.386 156.840 108.304 1.00200.00 ATOM 149 C GLU D 56 -124.906 155.460 108.726 1.00189.32 ATOM 150 O GLU D 56 -123.794 155.324 109.233 1.00179.06 ATOM 151 CB GLU D 56 -124.389 157.450 107.311 1.00181.77 ATOM 152 CG GLU D 56 -125.003 158.312 106.213 1.00186.25 ATOM 153 CD GLU D 56 -125.259 157.540 104.926 1.00191.55 ATOM 154 OE1 GLU D 56 -126.048 156.569 104.951 1.00183.99 ATOM 155 OE2 GLU D 56 -124.667 157.906 103.886 1.00192.02 ATOM 156 N ILE D 57 -125.732 154.438 108.533 1.00123.54 ATOM 157 CA ILE D 57 -125.331 153.094 108.927 1.00129.32 ATOM 158 C ILE D 57 -125.853 151.978 108.026 1.00118.65 ATOM 159 O ILE D 57 -126.968 151.496 108.209 1.00107.29 ATOM 160 CB ILE D 57 -125.750 152.815 110.397 1.00154.66 ATOM 161 CG1 ILE D 57 -124.847 153.611 111.348 1.00143.06 ATOM 162 CG2 ILE D 57 -125.666 151.323 110.713 1.00142.80 ATOM 163 CD1 ILE D 57 -123.368 153.240 111.273 1.00129.94 ATOM 164 N TYR D 58 -125.030 151.570 107.058 1.00156.01 ATOM 165 CA TYR D 58 -125.385 150.496 106.127 1.00156.50 ATOM 166 C TYR D 58 -125.010 149.135 106.721 1.00162.86 ATOM 167 O TYR D 58 -123.831 148.841 106.922 1.00162.28 ATOM 168 CB TYR D 58 -124.664 150.686 104.785 1.00152.39 ATOM 169 CG TYR D 58 -125.200 151.812 103.914 1.00171.63 ATOM 170 CD1 TYR D 58 -124.619 152.091 102.675 1.00170.08 ATOM 171 CD2 TYR D 58 -126.285 152.595 104.322 1.00168.78 ATOM 172 CE1 TYR D 58 -125.102 153.120 101.864 1.00162.76 ATOM 173 CE2 TYR D 58 -126.778 153.627 103.517 1.00176.32 ATOM 174 CZ TYR D 58 -126.180 153.884 102.291 1.00169.88 ATOM 175 OH TYR D 58 -126.656 154.903 101.495 1.00157.36 ATOM 176 N VAL D 59 -126.019 148.308 106.988 1.00156.11 ATOM 177 CA VAL D 59 -125.816 146.988 107.579 1.00150.66 ATOM 178 C VAL D 59 -126.210 145.830 106.677 1.00152.96 ATOM 179 O VAL D 59 -127.347 145.743 106.214 1.00153.67 ATOM 180 CB VAL D 59 -126.609 146.843 108.903 1.00129.48 ATOM 181 CG1 VAL D 59 -126.669 145.378 109.327 1.00120.13 ATOM 182 CG2 VAL D 59 -125.956 147.680 109.993 1.00127.71 ATOM 183 N GLU D 60 -125.259 144.933 106.440 1.00140.11 ATOM 184 CA GLU D 60 -125.505 143.756 105.620 1.00141.34 ATOM 185 C GLU D 60 -126.232 142.729 106.483 1.00138.41 ATOM 186 O GLU D 60 -125.645 141.732 106.901 1.00132.40 ATOM 187 CB GLU D 60 -124.186 143.156 105.120 1.00110.99 ATOM 188 CG GLU D 60 -123.410 144.017 104.139 1.00120.17 ATOM 189 CD GLU D 60 -123.019 145.358 104.720 1.00118.05 ATOM 190 OE1 GLU D 60 -122.450 145.375 105.829 1.00113.73 ATOM 191 OE2 GLU D 60 -123.273 146.394 104.070 1.00109.71 ATOM 192 N VAL D 61 -127.505 142.988 106.765 1.00140.31 ATOM 193 CA VAL D 61 -128.310 142.076 107.572 1.00142.86 ATOM 194 C VAL D 61 -128.051 142.187 109.071 1.00147.59 ATOM 195 O VAL D 61 -126.940 141.954 109.544 1.00142.48 ATOM 196 CB VAL D 61 -128.091 140.605 107.133 1.00177.25 ATOM 197 CG1 VAL D 61 -128.612 139.654 108.194 1.00170.89 ATOM 198 CG2 VAL D 61 -128.795 140.352 105.808 1.00169.90 ATOM 199 N CYS D 62 -129.103 142.533 109.804 1.00108.72 ATOM 200 CA CYS D 62 -129.049 142.682 111.254 1.00 98.96 ATOM 201 C CYS D 62 -129.680 141.462 111.931 1.00 87.90 ATOM 202 O CYS D 62 -129.668 140.356 111.391 1.00 80.24 ATOM 203 CB CYS D 62 -129.830 143.927 111.677 1.00200.00 ATOM 204 SG CYS D 62 -131.638 143.726 111.549 1.00200.00 ATOM 205 N SER D 63 -130.234 141.685 113.120 1.00132.21 ATOM 206 CA SER D 63 -130.900 140.634 113.877 1.00139.31 ATOM 207 C SER D 63 -132.289 140.442 113.290 1.00153.46 ATOM 208 O SER D 63 -133.278 140.996 113.773 1.00154.50 ATOM 209 CB SER D 63 -130.997 141.012 115.360 1.00112.21 ATOM 210 OG SER D 63 -131.621 142.271 115.539 1.00115.33 ATOM 211 N LYS D 64 -132.340 139.657 112.225 1.00124.04 ATOM 212 CA LYS D 64 -133.581 139.370 111.533 1.00123.97 ATOM 213 C LYS D 64 -133.212 138.399 110.417 1.00130.91 ATOM 214 O LYS D 64 -133.798 138.423 109.337 1.00138.70 ATOM 215 CB LYS D 64 -134.157 140.665 110.960 1.00132.39 ATOM 216 CG LYS D 64 -135.634 140.606 110.656 1.00134.09 ATOM 217 CD LYS D 64 -136.148 141.962 110.207 1.00133.45 ATOM 218 CE LYS D 64 -137.654 141.924 109.971 1.00123.11 ATOM 219 NZ LYS D 64 -138.210 143.239 109.535 1.00115.51 ATOM 220 N CYS D 65 -132.223 137.549 110.701 1.00147.89 ATOM 221 CA CYS D 65 -131.718 136.551 109.756 1.00147.43 ATOM 222 C CYS D 65 -130.934 135.434 110.469 1.00144.73 ATOM 223 O CYS D 65 -129.695 135.386 110.318 1.00137.66 ATOM 224 CB CYS D 65 -130.810 137.223 108.720 1.00108.05 ATOM 225 SG CYS D 65 -131.557 138.594 107.782 1.00145.62 ATOM 226 N HIS D 66 -131.556 134.616 111.179 1.00105.39 TER