HEADER RIBOSOME 09-AUG-12 4V6U TITLE Promiscuous behavior of proteins in archaeal ribosomes revealed by TITLE 2 cryo-EM: implications for evolution of eukaryotic ribosomes COMPND MOL_ID: 55; COMPND 2 MOLECULE: 50S ribosomal protein L41e; COMPND 3 CHAIN: Bh; EXPDTA ELECTRON MICROSCOPY DBREF 4V6U B 1 24 UNP Q8U232 RL41_PYRFU 1 24 SEQRES 1 Bh 24 MET ARG TRP LYS TRP ILE LYS LYS ARG ILE ARG ARG LEU SEQRES 2 Bh 24 LYS ARG GLN ARG LYS LYS GLU ARG GLY LEU ILE ATOM 1 N MET B 1 -39.231 22.264 21.497 1.00 0.00 ATOM 2 CA MET B 1 -38.572 23.280 20.652 1.00 0.00 ATOM 3 C MET B 1 -37.219 23.645 20.942 1.00 0.00 ATOM 4 O MET B 1 -36.323 23.497 20.088 1.00 0.00 ATOM 5 CB MET B 1 -39.421 24.552 20.673 1.00 0.00 ATOM 6 CG MET B 1 -40.815 24.380 20.092 1.00 0.00 ATOM 7 SD MET B 1 -40.788 23.856 18.367 1.00 0.00 ATOM 8 CE MET B 1 -40.091 25.308 17.583 1.00 0.00 ATOM 9 N ARG B 2 -36.957 24.241 22.110 1.00 0.00 ATOM 10 CA ARG B 2 -35.699 24.884 22.474 1.00 0.00 ATOM 11 C ARG B 2 -34.542 23.900 22.466 1.00 0.00 ATOM 12 O ARG B 2 -33.425 24.231 22.067 1.00 0.00 ATOM 13 CB ARG B 2 -35.816 25.542 23.850 1.00 0.00 ATOM 14 CG ARG B 2 -36.777 26.719 23.895 1.00 0.00 ATOM 15 CD ARG B 2 -36.858 27.403 25.250 1.00 0.00 ATOM 16 NE ARG B 2 -37.843 28.481 25.262 1.00 0.00 ATOM 17 CZ ARG B 2 -38.192 29.159 26.346 1.00 0.00 ATOM 18 NH1 ARG B 2 -37.633 28.878 27.516 1.00 0.00 ATOM 19 NH2 ARG B 2 -39.098 30.125 26.264 1.00 0.00 ATOM 20 N TRP B 3 -34.772 22.589 22.790 1.00 0.00 ATOM 21 CA TRP B 3 -33.793 21.549 22.669 1.00 0.00 ATOM 22 C TRP B 3 -33.420 21.276 21.284 1.00 0.00 ATOM 23 O TRP B 3 -32.194 21.211 20.997 1.00 0.00 ATOM 24 CB TRP B 3 -34.062 20.254 23.397 1.00 0.00 ATOM 25 CG TRP B 3 -34.428 20.357 24.813 1.00 0.00 ATOM 26 CD1 TRP B 3 -35.544 20.677 25.531 1.00 0.00 ATOM 27 CD2 TRP B 3 -33.388 20.127 25.772 1.00 0.00 ATOM 28 NE1 TRP B 3 -35.263 20.661 26.876 1.00 0.00 ATOM 29 CE2 TRP B 3 -33.947 20.326 27.052 1.00 0.00 ATOM 30 CE3 TRP B 3 -32.038 19.774 25.683 1.00 0.00 ATOM 31 CZ2 TRP B 3 -33.205 20.183 28.224 1.00 0.00 ATOM 32 CZ3 TRP B 3 -31.305 19.632 26.846 1.00 0.00 ATOM 33 CH2 TRP B 3 -31.890 19.837 28.099 1.00 0.00 ATOM 34 N LYS B 4 -34.370 21.109 20.391 1.00 0.00 ATOM 35 CA LYS B 4 -34.296 20.946 18.937 1.00 0.00 ATOM 36 C LYS B 4 -33.172 21.715 18.332 1.00 0.00 ATOM 37 O LYS B 4 -32.181 21.140 17.921 1.00 0.00 ATOM 38 CB LYS B 4 -35.616 21.370 18.292 1.00 0.00 ATOM 39 CG LYS B 4 -36.795 20.475 18.642 1.00 0.00 ATOM 40 CD LYS B 4 -38.076 20.966 17.991 1.00 0.00 ATOM 41 CE LYS B 4 -39.249 20.059 18.322 1.00 0.00 ATOM 42 NZ LYS B 4 -40.516 20.541 17.708 1.00 0.00 ATOM 43 N TRP B 5 -33.410 23.056 18.401 1.00 0.00 ATOM 44 CA TRP B 5 -32.586 24.188 18.121 1.00 0.00 ATOM 45 C TRP B 5 -31.196 24.175 18.697 1.00 0.00 ATOM 46 O TRP B 5 -30.248 24.555 17.987 1.00 0.00 ATOM 47 CB TRP B 5 -33.298 25.454 18.601 1.00 0.00 ATOM 48 CG TRP B 5 -34.547 25.766 17.834 1.00 0.00 ATOM 49 CD1 TRP B 5 -35.826 25.421 18.168 1.00 0.00 ATOM 50 CD2 TRP B 5 -34.639 26.487 16.599 1.00 0.00 ATOM 51 NE1 TRP B 5 -36.705 25.881 17.219 1.00 0.00 ATOM 52 CE2 TRP B 5 -36.003 26.541 16.245 1.00 0.00 ATOM 53 CE3 TRP B 5 -33.705 27.095 15.752 1.00 0.00 ATOM 54 CZ2 TRP B 5 -36.451 27.174 15.087 1.00 0.00 ATOM 55 CZ3 TRP B 5 -34.154 27.723 14.605 1.00 0.00 ATOM 56 CH2 TRP B 5 -35.514 27.757 14.283 1.00 0.00 ATOM 57 N ILE B 6 -30.954 23.809 19.966 1.00 0.00 ATOM 58 CA ILE B 6 -29.670 23.821 20.604 1.00 0.00 ATOM 59 C ILE B 6 -28.798 22.771 19.960 1.00 0.00 ATOM 60 O ILE B 6 -27.625 23.027 19.711 1.00 0.00 ATOM 61 CB ILE B 6 -29.798 23.570 22.118 1.00 0.00 ATOM 62 CG1 ILE B 6 -30.510 24.741 22.796 1.00 0.00 ATOM 63 CG2 ILE B 6 -28.428 23.342 22.738 1.00 0.00 ATOM 64 CD1 ILE B 6 -30.912 24.466 24.226 1.00 0.00 ATOM 65 N LYS B 7 -29.395 21.609 19.667 1.00 0.00 ATOM 66 CA LYS B 7 -28.646 20.503 19.080 1.00 0.00 ATOM 67 C LYS B 7 -28.409 20.731 17.623 1.00 0.00 ATOM 68 O LYS B 7 -27.429 20.268 17.096 1.00 0.00 ATOM 69 CB LYS B 7 -29.386 19.181 19.293 1.00 0.00 ATOM 70 CG LYS B 7 -29.463 18.738 20.745 1.00 0.00 ATOM 71 CD LYS B 7 -30.229 17.435 20.886 1.00 0.00 ATOM 72 CE LYS B 7 -30.285 16.980 22.335 1.00 0.00 ATOM 73 NZ LYS B 7 -31.056 15.716 22.491 1.00 0.00 ATOM 74 N LYS B 8 -29.315 21.547 16.985 1.00 0.00 ATOM 75 CA LYS B 8 -29.120 21.879 15.579 1.00 0.00 ATOM 76 C LYS B 8 -27.972 22.826 15.444 1.00 0.00 ATOM 77 O LYS B 8 -27.182 22.720 14.518 1.00 0.00 ATOM 78 CB LYS B 8 -30.389 22.485 14.980 1.00 0.00 ATOM 79 CG LYS B 8 -31.552 21.510 14.867 1.00 0.00 ATOM 80 CD LYS B 8 -32.784 22.183 14.288 1.00 0.00 ATOM 81 CE LYS B 8 -33.937 21.203 14.153 1.00 0.00 ATOM 82 NZ LYS B 8 -35.160 21.855 13.610 1.00 0.00 ATOM 83 N ARG B 9 -27.877 23.799 16.387 1.00 0.00 ATOM 84 CA ARG B 9 -26.890 24.811 16.458 1.00 0.00 ATOM 85 C ARG B 9 -25.568 24.213 16.839 1.00 0.00 ATOM 86 O ARG B 9 -24.585 24.612 16.283 1.00 0.00 ATOM 87 CB ARG B 9 -27.295 25.895 17.460 1.00 0.00 ATOM 88 CG ARG B 9 -28.500 26.716 17.032 1.00 0.00 ATOM 89 CD ARG B 9 -28.873 27.824 18.003 1.00 0.00 ATOM 90 NE ARG B 9 -30.076 28.538 17.585 1.00 0.00 ATOM 91 CZ ARG B 9 -30.680 29.468 18.309 1.00 0.00 ATOM 92 NH1 ARG B 9 -30.192 29.809 19.496 1.00 0.00 ATOM 93 NH2 ARG B 9 -31.771 30.066 17.850 1.00 0.00 ATOM 94 N ILE B 10 -25.572 23.272 17.753 1.00 0.00 ATOM 95 CA ILE B 10 -24.385 22.560 18.127 1.00 0.00 ATOM 96 C ILE B 10 -23.874 21.644 17.086 1.00 0.00 ATOM 97 O ILE B 10 -22.692 21.525 16.974 1.00 0.00 ATOM 98 CB ILE B 10 -24.641 21.766 19.421 1.00 0.00 ATOM 99 CG1 ILE B 10 -24.918 22.719 20.586 1.00 0.00 ATOM 100 CG2 ILE B 10 -23.459 20.862 19.736 1.00 0.00 ATOM 101 CD1 ILE B 10 -25.437 22.029 21.828 1.00 0.00 ATOM 102 N ARG B 11 -24.730 20.952 16.310 1.00 0.00 ATOM 103 CA ARG B 11 -24.364 20.110 15.178 1.00 0.00 ATOM 104 C ARG B 11 -23.837 21.013 14.086 1.00 0.00 ATOM 105 O ARG B 11 -22.832 20.747 13.470 1.00 0.00 ATOM 106 CB ARG B 11 -25.556 19.289 14.685 1.00 0.00 ATOM 107 CG ARG B 11 -26.010 18.210 15.655 1.00 0.00 ATOM 108 CD ARG B 11 -27.165 17.361 15.145 1.00 0.00 ATOM 109 NE ARG B 11 -27.610 16.388 16.138 1.00 0.00 ATOM 110 CZ ARG B 11 -28.670 15.608 15.992 1.00 0.00 ATOM 111 NH1 ARG B 11 -29.401 15.676 14.886 1.00 0.00 ATOM 112 NH2 ARG B 11 -29.002 14.750 16.948 1.00 0.00 ATOM 113 N ARG B 12 -24.484 22.180 13.804 1.00 0.00 ATOM 114 CA ARG B 12 -24.024 23.162 12.846 1.00 0.00 ATOM 115 C ARG B 12 -22.705 23.748 13.236 1.00 0.00 ATOM 116 O ARG B 12 -21.830 23.885 12.394 1.00 0.00 ATOM 117 CB ARG B 12 -25.062 24.274 12.687 1.00 0.00 ATOM 118 CG ARG B 12 -26.366 23.820 12.051 1.00 0.00 ATOM 119 CD ARG B 12 -27.380 24.935 11.848 1.00 0.00 ATOM 120 NE ARG B 12 -28.638 24.437 11.300 1.00 0.00 ATOM 121 CZ ARG B 12 -29.724 25.180 11.137 1.00 0.00 ATOM 122 NH1 ARG B 12 -29.712 26.462 11.476 1.00 0.00 ATOM 123 NH2 ARG B 12 -30.828 24.643 10.630 1.00 0.00 ATOM 124 N LEU B 13 -22.525 24.081 14.533 1.00 0.00 ATOM 125 CA LEU B 13 -21.321 24.675 15.057 1.00 0.00 ATOM 126 C LEU B 13 -20.219 23.692 15.017 1.00 0.00 ATOM 127 O LEU B 13 -19.133 24.054 14.620 1.00 0.00 ATOM 128 CB LEU B 13 -21.539 25.177 16.486 1.00 0.00 ATOM 129 CG LEU B 13 -22.527 26.335 16.655 1.00 0.00 ATOM 130 CD1 LEU B 13 -22.757 26.632 18.128 1.00 0.00 ATOM 131 CD2 LEU B 13 -22.034 27.573 15.924 1.00 0.00 ATOM 132 N LYS B 14 -20.457 22.437 15.434 1.00 0.00 ATOM 133 CA LYS B 14 -19.429 21.437 15.504 1.00 0.00 ATOM 134 C LYS B 14 -19.052 20.900 14.175 1.00 0.00 ATOM 135 O LYS B 14 -17.884 20.614 13.991 1.00 0.00 ATOM 136 CB LYS B 14 -19.877 20.290 16.412 1.00 0.00 ATOM 137 CG LYS B 14 -20.035 20.681 17.873 1.00 0.00 ATOM 138 CD LYS B 14 -20.504 19.504 18.712 1.00 0.00 ATOM 139 CE LYS B 14 -20.640 19.887 20.177 1.00 0.00 ATOM 140 NZ LYS B 14 -21.123 18.750 21.006 1.00 0.00 ATOM 141 N ARG B 15 -19.992 20.720 13.221 1.00 0.00 ATOM 142 CA ARG B 15 -19.642 20.252 11.900 1.00 0.00 ATOM 143 C ARG B 15 -18.955 21.323 11.123 1.00 0.00 ATOM 144 O ARG B 15 -17.927 21.061 10.522 1.00 0.00 ATOM 145 CB ARG B 15 -20.887 19.772 11.152 1.00 0.00 ATOM 146 CG ARG B 15 -21.521 18.521 11.740 1.00 0.00 ATOM 147 CD ARG B 15 -22.730 18.017 10.969 1.00 0.00 ATOM 148 NE ARG B 15 -23.344 16.858 11.610 1.00 0.00 ATOM 149 CZ ARG B 15 -24.475 16.296 11.208 1.00 0.00 ATOM 150 NH1 ARG B 15 -25.123 16.782 10.158 1.00 0.00 ATOM 151 NH2 ARG B 15 -24.960 15.243 11.853 1.00 0.00 ATOM 152 N GLN B 16 -19.495 22.521 11.162 1.00 0.00 ATOM 153 CA GLN B 16 -18.858 23.709 10.612 1.00 0.00 ATOM 154 C GLN B 16 -17.515 24.124 11.208 1.00 0.00 ATOM 155 O GLN B 16 -16.619 24.463 10.458 1.00 0.00 ATOM 156 CB GLN B 16 -19.827 24.887 10.729 1.00 0.00 ATOM 157 CG GLN B 16 -21.095 24.735 9.908 1.00 0.00 ATOM 158 CD GLN B 16 -22.061 25.884 10.104 1.00 0.00 ATOM 159 OE1 GLN B 16 -22.041 26.549 11.141 1.00 0.00 ATOM 160 NE2 GLN B 16 -22.911 26.123 9.110 1.00 0.00 ATOM 161 N ARG B 17 -17.387 24.022 12.540 1.00 0.00 ATOM 162 CA ARG B 17 -16.132 24.183 13.241 1.00 0.00 ATOM 163 C ARG B 17 -15.234 23.027 13.015 1.00 0.00 ATOM 164 O ARG B 17 -14.036 23.213 13.097 1.00 0.00 ATOM 165 CB ARG B 17 -16.378 24.370 14.740 1.00 0.00 ATOM 166 CG ARG B 17 -17.082 25.670 15.095 1.00 0.00 ATOM 167 CD ARG B 17 -17.284 25.879 16.587 1.00 0.00 ATOM 168 NE ARG B 17 -18.024 27.105 16.874 1.00 0.00 ATOM 169 CZ ARG B 17 -18.433 27.462 18.082 1.00 0.00 ATOM 170 NH1 ARG B 17 -18.173 26.690 19.129 1.00 0.00 ATOM 171 NH2 ARG B 17 -19.102 28.596 18.249 1.00 0.00 ATOM 172 N LYS B 18 -15.745 21.803 12.756 1.00 0.00 ATOM 173 CA LYS B 18 -14.957 20.728 12.194 1.00 0.00 ATOM 174 C LYS B 18 -14.467 21.120 10.833 1.00 0.00 ATOM 175 O LYS B 18 -13.342 20.815 10.519 1.00 0.00 ATOM 176 CB LYS B 18 -15.771 19.436 12.119 1.00 0.00 ATOM 177 CG LYS B 18 -16.116 18.839 13.473 1.00 0.00 ATOM 178 CD LYS B 18 -16.944 17.574 13.326 1.00 0.00 ATOM 179 CE LYS B 18 -17.269 16.964 14.680 1.00 0.00 ATOM 180 NZ LYS B 18 -18.101 15.736 14.550 1.00 0.00 ATOM 181 N LYS B 19 -15.270 21.847 10.040 1.00 0.00 ATOM 182 CA LYS B 19 -14.840 22.255 8.639 1.00 0.00 ATOM 183 C LYS B 19 -13.895 23.437 8.727 1.00 0.00 ATOM 184 O LYS B 19 -13.132 23.704 7.792 1.00 0.00 ATOM 185 CB LYS B 19 -16.052 22.600 7.773 1.00 0.00 ATOM 186 CG LYS B 19 -16.939 21.409 7.443 1.00 0.00 ATOM 187 CD LYS B 19 -18.135 21.825 6.603 1.00 0.00 ATOM 188 CE LYS B 19 -19.009 20.633 6.255 1.00 0.00 ATOM 189 NZ LYS B 19 -20.197 21.030 5.451 1.00 0.00 ATOM 190 N GLU B 20 -13.970 24.197 9.867 1.00 0.00 ATOM 191 CA GLU B 20 -13.030 25.242 10.159 1.00 0.00 ATOM 192 C GLU B 20 -11.776 24.629 10.668 1.00 0.00 ATOM 193 O GLU B 20 -10.736 25.140 10.313 1.00 0.00 ATOM 194 CB GLU B 20 -13.604 26.229 11.178 1.00 0.00 ATOM 195 CG GLU B 20 -14.763 27.062 10.651 1.00 0.00 ATOM 196 CD GLU B 20 -15.349 27.975 11.710 1.00 0.00 ATOM 197 OE1 GLU B 20 -14.984 27.826 12.894 1.00 0.00 ATOM 198 OE2 GLU B 20 -16.178 28.842 11.358 1.00 0.00 ATOM 199 N ARG B 21 -11.859 23.599 11.551 1.00 0.00 ATOM 200 CA ARG B 21 -10.770 22.919 12.224 1.00 0.00 ATOM 201 C ARG B 21 -9.969 22.080 11.289 1.00 0.00 ATOM 202 O ARG B 21 -8.779 21.862 11.487 1.00 0.00 ATOM 203 CB ARG B 21 -11.312 22.055 13.364 1.00 0.00 ATOM 204 CG ARG B 21 -11.926 22.848 14.507 1.00 0.00 ATOM 205 CD ARG B 21 -12.420 21.992 15.662 1.00 0.00 ATOM 206 NE ARG B 21 -13.063 22.792 16.700 1.00 0.00 ATOM 207 CZ ARG B 21 -13.681 22.284 17.756 1.00 0.00 ATOM 208 NH1 ARG B 21 -13.740 20.968 17.924 1.00 0.00 ATOM 209 NH2 ARG B 21 -14.240 23.087 18.651 1.00 0.00 ATOM 210 N GLY B 22 -10.667 21.495 10.310 1.00 0.00 ATOM 211 CA GLY B 22 -10.138 20.613 9.313 1.00 0.00 ATOM 212 C GLY B 22 -10.069 21.353 7.999 1.00 0.00 ATOM 213 O GLY B 22 -9.722 20.796 6.960 1.00 0.00 ATOM 214 N LEU B 23 -10.313 22.681 8.090 1.00 0.00 ATOM 215 CA LEU B 23 -9.917 23.742 7.200 1.00 0.00 ATOM 216 C LEU B 23 -8.851 24.472 7.948 1.00 0.00 ATOM 217 O LEU B 23 -8.279 25.426 7.425 1.00 0.00 ATOM 218 CB LEU B 23 -11.087 24.657 6.831 1.00 0.00 ATOM 219 CG LEU B 23 -12.181 24.040 5.956 1.00 0.00 ATOM 220 CD1 LEU B 23 -13.343 25.006 5.791 1.00 0.00 ATOM 221 CD2 LEU B 23 -11.619 23.631 4.602 1.00 0.00 ATOM 222 N ILE B 24 -8.584 24.021 9.210 1.00 0.00 ATOM 223 CA ILE B 24 -7.580 24.541 10.090 1.00 0.00 ATOM 224 C ILE B 24 -6.573 23.394 10.156 1.00 0.00 ATOM 225 O ILE B 24 -6.898 22.641 9.584 1.00 0.00 ATOM 226 CB ILE B 24 -8.137 24.913 11.478 1.00 0.00 ATOM 227 CG1 ILE B 24 -9.037 26.146 11.378 1.00 0.00 ATOM 228 CG2 ILE B 24 -7.002 25.154 12.460 1.00 0.00 ATOM 229 CD1 ILE B 24 -9.832 26.424 12.634 1.00 0.00 ATOM 230 OXT ILE B 24 -5.818 23.658 10.757 1.00 0.00 TER