HEADER RIBOSOME 11-OCT-11 4V88 TITLE The structure of the eukaryotic ribosome at 3.0 A resolution. COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Bn, Dn; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS DBREF 4V88 D 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 Dn 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Dn 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET D 1 226.332 0.916 236.824 1.00 47.84 ATOM 2 CA MET D 1 225.868 0.320 235.578 1.00 47.85 ATOM 3 C MET D 1 226.677 0.837 234.373 1.00 47.77 ATOM 4 O MET D 1 227.199 1.963 234.406 1.00 47.80 ATOM 5 CB MET D 1 224.375 0.568 235.405 1.00 48.12 ATOM 6 CG MET D 1 223.913 2.015 235.216 1.00 48.34 ATOM 7 SD MET D 1 222.067 2.138 235.077 1.00 48.66 ATOM 8 CE MET D 1 221.779 1.315 233.527 1.00 48.63 ATOM 9 N ARG D 2 226.799 0.000 233.335 1.00 46.64 ATOM 10 CA ARG D 2 227.509 0.385 232.109 1.00 46.56 ATOM 11 C ARG D 2 227.008 1.755 231.694 1.00 46.78 ATOM 12 O ARG D 2 225.818 2.049 231.822 1.00 47.01 ATOM 13 CB ARG D 2 227.354 -0.644 230.962 1.00 46.49 ATOM 14 CG ARG D 2 227.555 -0.018 229.564 1.00 46.52 ATOM 15 CD ARG D 2 228.458 -0.762 228.575 1.00 46.30 ATOM 16 NE ARG D 2 227.857 -1.935 227.931 1.00 46.29 ATOM 17 CZ ARG D 2 227.925 -2.244 226.631 1.00 46.25 ATOM 18 NH1 ARG D 2 228.530 -1.467 225.750 1.00 46.23 ATOM 19 NH2 ARG D 2 227.344 -3.350 226.197 1.00 46.23 ATOM 20 N ALA D 3 227.923 2.608 231.247 1.00 40.67 ATOM 21 CA ALA D 3 227.599 3.995 230.934 1.00 40.87 ATOM 22 C ALA D 3 226.505 4.016 229.893 1.00 41.05 ATOM 23 O ALA D 3 225.474 4.661 230.071 1.00 41.28 ATOM 24 CB ALA D 3 228.814 4.715 230.424 1.00 40.74 ATOM 25 N LYS D 4 226.728 3.280 228.812 1.00 51.64 ATOM 26 CA LYS D 4 225.815 3.306 227.676 1.00 51.80 ATOM 27 C LYS D 4 224.381 3.134 228.116 1.00 52.02 ATOM 28 O LYS D 4 223.478 3.731 227.544 1.00 52.23 ATOM 29 CB LYS D 4 226.257 2.283 226.611 1.00 51.63 ATOM 30 CG LYS D 4 225.283 2.129 225.493 1.00 51.78 ATOM 31 CD LYS D 4 225.652 0.992 224.630 1.00 51.60 ATOM 32 CE LYS D 4 226.465 1.518 223.510 1.00 51.53 ATOM 33 NZ LYS D 4 226.514 0.535 222.441 1.00 51.43 ATOM 34 N TRP D 5 224.207 2.362 229.182 1.00 48.63 ATOM 35 CA TRP D 5 222.902 2.012 229.671 1.00 48.81 ATOM 36 C TRP D 5 222.364 3.060 230.627 1.00 49.00 ATOM 37 O TRP D 5 221.156 3.318 230.634 1.00 49.23 ATOM 38 CB TRP D 5 222.947 0.673 230.375 1.00 48.67 ATOM 39 CG TRP D 5 223.408 -0.499 229.586 1.00 48.48 ATOM 40 CD1 TRP D 5 224.041 -1.583 230.093 1.00 48.26 ATOM 41 CD2 TRP D 5 223.287 -0.734 228.171 1.00 48.48 ATOM 42 NE1 TRP D 5 224.317 -2.483 229.099 1.00 48.13 ATOM 43 CE2 TRP D 5 223.842 -1.996 227.912 1.00 48.26 ATOM 44 CE3 TRP D 5 222.753 -0.010 227.099 1.00 48.64 ATOM 45 CZ2 TRP D 5 223.884 -2.555 226.627 1.00 48.20 ATOM 46 CZ3 TRP D 5 222.788 -0.583 225.821 1.00 48.58 ATOM 47 CH2 TRP D 5 223.362 -1.835 225.603 1.00 48.36 ATOM 48 N ARG D 6 223.242 3.647 231.438 1.00 71.57 ATOM 49 CA ARG D 6 222.885 4.832 232.204 1.00 71.75 ATOM 50 C ARG D 6 222.275 5.824 231.244 1.00 71.95 ATOM 51 O ARG D 6 221.171 6.315 231.437 1.00 72.18 ATOM 52 CB ARG D 6 224.123 5.456 232.822 1.00 71.60 ATOM 53 CG ARG D 6 224.071 5.676 234.318 1.00 71.63 ATOM 54 CD ARG D 6 223.575 7.066 234.714 1.00 71.85 ATOM 55 NE ARG D 6 224.666 7.864 235.313 1.00 71.75 ATOM 56 CZ ARG D 6 224.511 8.951 236.094 1.00 71.89 ATOM 57 NH1 ARG D 6 223.290 9.399 236.438 1.00 72.13 ATOM 58 NH2 ARG D 6 225.596 9.582 236.557 1.00 71.77 ATOM 59 N LYS D 7 223.032 6.097 230.196 1.00 45.19 ATOM 60 CA LYS D 7 222.626 6.935 229.112 1.00 45.35 ATOM 61 C LYS D 7 221.254 6.553 228.633 1.00 45.54 ATOM 62 O LYS D 7 220.408 7.429 228.486 1.00 45.77 ATOM 63 CB LYS D 7 223.609 6.777 227.988 1.00 45.17 ATOM 64 CG LYS D 7 223.341 7.662 226.818 1.00 45.31 ATOM 65 CD LYS D 7 224.609 7.838 226.030 1.00 45.12 ATOM 66 CE LYS D 7 224.329 8.697 224.843 1.00 45.26 ATOM 67 NZ LYS D 7 225.589 9.144 224.180 1.00 45.10 ATOM 68 N LYS D 8 220.990 5.271 228.397 1.00 37.10 ATOM 69 CA LYS D 8 219.656 4.873 227.926 1.00 37.29 ATOM 70 C LYS D 8 218.591 5.156 229.005 1.00 37.49 ATOM 71 O LYS D 8 217.486 5.661 228.728 1.00 37.72 ATOM 72 CB LYS D 8 219.659 3.404 227.524 1.00 37.14 ATOM 73 CG LYS D 8 218.354 2.808 226.973 1.00 37.29 ATOM 74 CD LYS D 8 218.560 1.295 226.794 1.00 37.11 ATOM 75 CE LYS D 8 219.036 0.914 225.416 1.00 36.99 ATOM 76 NZ LYS D 8 217.968 1.014 224.363 1.00 37.18 ATOM 77 N ARG D 9 218.961 4.852 230.238 1.00 45.03 ATOM 78 CA ARG D 9 218.133 5.166 231.374 1.00 45.20 ATOM 79 C ARG D 9 217.728 6.615 231.367 1.00 45.41 ATOM 80 O ARG D 9 216.558 6.914 231.595 1.00 45.64 ATOM 81 CB ARG D 9 218.860 4.853 232.702 1.00 45.04 ATOM 82 CG ARG D 9 217.970 4.881 233.926 1.00 45.19 ATOM 83 CD ARG D 9 218.777 5.107 235.150 1.00 45.08 ATOM 84 NE ARG D 9 218.864 4.061 236.191 1.00 44.96 ATOM 85 CZ ARG D 9 218.710 2.744 236.043 1.00 44.85 ATOM 86 NH1 ARG D 9 218.417 2.180 234.846 1.00 44.85 ATOM 87 NH2 ARG D 9 218.858 1.984 237.138 1.00 44.75 ATOM 88 N THR D 10 218.679 7.526 231.142 1.00 54.72 ATOM 89 CA THR D 10 218.347 8.927 231.363 1.00 54.92 ATOM 90 C THR D 10 217.506 9.489 230.213 1.00 55.12 ATOM 91 O THR D 10 216.660 10.356 230.426 1.00 55.35 ATOM 92 CB THR D 10 219.561 9.843 231.705 1.00 54.81 ATOM 93 OG1 THR D 10 220.120 10.383 230.506 1.00 54.77 ATOM 94 CG2 THR D 10 220.633 9.126 232.546 1.00 54.56 ATOM 95 N ARG D 11 217.725 8.967 229.009 1.00 70.37 ATOM 96 CA ARG D 11 216.880 9.300 227.883 1.00 70.55 ATOM 97 C ARG D 11 215.453 8.929 228.178 1.00 70.75 ATOM 98 O ARG D 11 214.523 9.668 227.874 1.00 70.98 ATOM 99 CB ARG D 11 217.343 8.567 226.636 1.00 70.40 ATOM 100 CG ARG D 11 218.612 9.155 226.096 1.00 70.25 ATOM 101 CD ARG D 11 218.591 9.308 224.586 1.00 70.28 ATOM 102 NE ARG D 11 219.767 10.055 224.104 1.00 70.16 ATOM 103 CZ ARG D 11 220.867 9.508 223.569 1.00 69.92 ATOM 104 NH1 ARG D 11 220.980 8.172 223.449 1.00 69.77 ATOM 105 NH2 ARG D 11 221.858 10.306 223.154 1.00 69.84 ATOM 106 N ARG D 12 215.287 7.753 228.756 1.00 54.68 ATOM 107 CA ARG D 12 213.968 7.281 229.124 1.00 54.85 ATOM 108 C ARG D 12 213.377 8.202 230.157 1.00 55.04 ATOM 109 O ARG D 12 212.238 8.597 230.035 1.00 55.27 ATOM 110 CB ARG D 12 214.047 5.891 229.707 1.00 54.69 ATOM 111 CG ARG D 12 214.362 4.865 228.700 1.00 54.54 ATOM 112 CD ARG D 12 214.403 3.498 229.360 1.00 54.39 ATOM 113 NE ARG D 12 214.684 2.431 228.403 1.00 54.24 ATOM 114 CZ ARG D 12 215.201 1.267 228.747 1.00 54.03 ATOM 115 NH1 ARG D 12 215.490 1.042 230.026 1.00 53.96 ATOM 116 NH2 ARG D 12 215.422 0.350 227.806 1.00 53.90 ATOM 117 N LEU D 13 214.154 8.545 231.181 1.00 50.99 ATOM 118 CA LEU D 13 213.642 9.392 232.232 1.00 51.16 ATOM 119 C LEU D 13 213.101 10.680 231.642 1.00 51.39 ATOM 120 O LEU D 13 212.053 11.147 232.059 1.00 51.61 ATOM 121 CB LEU D 13 214.732 9.685 233.249 1.00 51.01 ATOM 122 CG LEU D 13 214.343 9.822 234.733 1.00 51.09 ATOM 123 CD1 LEU D 13 215.368 10.647 235.424 1.00 51.00 ATOM 124 CD2 LEU D 13 212.898 10.407 235.025 1.00 51.39 ATOM 125 N LYS D 14 213.820 11.222 230.656 1.00 59.59 ATOM 126 CA LYS D 14 213.485 12.485 229.991 1.00 59.78 ATOM 127 C LYS D 14 212.156 12.480 229.252 1.00 60.00 ATOM 128 O LYS D 14 211.386 13.429 229.350 1.00 60.23 ATOM 129 CB LYS D 14 214.583 12.899 229.032 1.00 59.64 ATOM 130 CG LYS D 14 215.737 13.527 229.731 1.00 59.51 ATOM 131 CD LYS D 14 216.758 14.131 228.759 1.00 59.40 ATOM 132 CE LYS D 14 216.218 15.439 228.177 1.00 59.63 ATOM 133 NZ LYS D 14 217.218 16.052 227.244 1.00 59.53 ATOM 134 N ARG D 15 211.887 11.426 228.496 1.00 67.55 ATOM 135 CA ARG D 15 210.627 11.345 227.796 1.00 67.75 ATOM 136 C ARG D 15 209.493 11.335 228.802 1.00 67.94 ATOM 137 O ARG D 15 208.498 12.011 228.600 1.00 68.18 ATOM 138 CB ARG D 15 210.603 10.129 226.885 1.00 67.63 ATOM 139 CG ARG D 15 211.630 10.250 225.797 1.00 67.47 ATOM 140 CD ARG D 15 211.212 9.483 224.577 1.00 67.47 ATOM 141 NE ARG D 15 211.186 8.071 224.895 1.00 67.33 ATOM 142 CZ ARG D 15 212.281 7.298 224.891 1.00 67.06 ATOM 143 NH1 ARG D 15 213.479 7.816 224.567 1.00 66.92 ATOM 144 NH2 ARG D 15 212.181 5.999 225.218 1.00 66.95 ATOM 145 N LYS D 16 209.667 10.592 229.893 1.00 58.94 ATOM 146 CA LYS D 16 208.723 10.583 230.989 1.00 59.10 ATOM 147 C LYS D 16 208.562 11.970 231.606 1.00 59.27 ATOM 148 O LYS D 16 207.449 12.397 231.945 1.00 59.50 ATOM 149 CB LYS D 16 209.139 9.597 232.058 1.00 58.93 ATOM 150 CG LYS D 16 208.278 8.344 232.070 1.00 58.94 ATOM 151 CD LYS D 16 208.455 7.499 233.381 1.00 58.82 ATOM 152 CE LYS D 16 208.513 8.365 234.703 1.00 58.90 ATOM 153 NZ LYS D 16 209.403 7.792 235.830 1.00 58.69 ATOM 154 N ARG D 17 209.654 12.700 231.747 1.00 60.45 ATOM 155 CA ARG D 17 209.507 14.018 232.298 1.00 60.61 ATOM 156 C ARG D 17 208.811 14.935 231.313 1.00 60.83 ATOM 157 O ARG D 17 207.889 15.627 231.691 1.00 61.06 ATOM 158 CB ARG D 17 210.822 14.570 232.835 1.00 60.45 ATOM 159 CG ARG D 17 211.082 14.110 234.259 1.00 60.35 ATOM 160 CD ARG D 17 211.866 15.101 235.064 1.00 60.32 ATOM 161 NE ARG D 17 213.278 14.767 234.941 1.00 60.05 ATOM 162 CZ ARG D 17 214.008 14.164 235.886 1.00 59.86 ATOM 163 NH1 ARG D 17 213.481 13.838 237.080 1.00 59.92 ATOM 164 NH2 ARG D 17 215.285 13.914 235.634 1.00 59.62 ATOM 165 N ARG D 18 209.208 14.914 230.049 1.00 90.37 ATOM 166 CA ARG D 18 208.522 15.710 229.045 1.00 90.57 ATOM 167 C ARG D 18 207.021 15.494 229.070 1.00 90.80 ATOM 168 O ARG D 18 206.242 16.434 228.957 1.00 91.03 ATOM 169 CB ARG D 18 209.031 15.352 227.668 1.00 90.45 ATOM 170 CG ARG D 18 210.157 16.215 227.196 1.00 90.35 ATOM 171 CD ARG D 18 210.305 16.091 225.691 1.00 90.32 ATOM 172 NE ARG D 18 209.245 16.803 224.960 1.00 90.57 ATOM 173 CZ ARG D 18 209.080 16.762 223.632 1.00 90.60 ATOM 174 NH1 ARG D 18 208.079 17.445 223.061 1.00 90.85 ATOM 175 NH2 ARG D 18 209.910 16.031 222.873 1.00 90.39 ATOM 176 N LYS D 19 206.640 14.233 229.234 1.00 63.32 ATOM 177 CA LYS D 19 205.257 13.797 229.215 1.00 63.51 ATOM 178 C LYS D 19 204.481 14.298 230.407 1.00 63.70 ATOM 179 O LYS D 19 203.414 14.888 230.253 1.00 63.94 ATOM 180 CB LYS D 19 205.189 12.284 229.208 1.00 63.37 ATOM 181 CG LYS D 19 204.499 11.676 227.995 1.00 63.42 ATOM 182 CD LYS D 19 205.503 11.257 226.907 1.00 63.21 ATOM 183 CE LYS D 19 204.831 10.518 225.724 1.00 63.25 ATOM 184 NZ LYS D 19 204.503 9.057 225.941 1.00 63.15 ATOM 185 N VAL D 20 204.995 14.068 231.608 1.00 49.67 ATOM 186 CA VAL D 20 204.273 14.567 232.784 1.00 49.84 ATOM 187 C VAL D 20 204.114 16.058 232.765 1.00 50.03 ATOM 188 O VAL D 20 203.076 16.596 233.098 1.00 50.26 ATOM 189 CB VAL D 20 204.938 14.266 234.104 1.00 49.70 ATOM 190 CG1 VAL D 20 203.880 14.448 235.149 1.00 49.90 ATOM 191 CG2 VAL D 20 205.479 12.843 234.153 1.00 49.46 ATOM 192 N ARG D 21 205.168 16.753 232.391 1.00 45.30 ATOM 193 CA ARG D 21 205.029 18.195 232.229 1.00 45.48 ATOM 194 C ARG D 21 203.907 18.571 231.205 1.00 45.71 ATOM 195 O ARG D 21 203.220 19.570 231.381 1.00 45.93 ATOM 196 CB ARG D 21 206.399 18.857 231.959 1.00 45.31 ATOM 197 CG ARG D 21 206.289 20.302 231.537 1.00 45.49 ATOM 198 CD ARG D 21 207.125 21.285 232.315 1.00 45.45 ATOM 199 NE ARG D 21 208.197 21.792 231.475 1.00 45.32 ATOM 200 CZ ARG D 21 208.558 23.064 231.370 1.00 45.39 ATOM 201 NH1 ARG D 21 207.942 23.994 232.072 1.00 45.59 ATOM 202 NH2 ARG D 21 209.545 23.390 230.552 1.00 45.26 ATOM 203 N ALA D 22 203.700 17.728 230.193 1.00 61.64 ATOM 204 CA ALA D 22 202.771 17.996 229.087 1.00 61.82 ATOM 205 C ALA D 22 201.322 17.930 229.516 1.00 62.06 ATOM 206 O ALA D 22 200.466 18.640 228.983 1.00 62.29 ATOM 207 CB ALA D 22 202.991 17.010 227.986 1.00 61.69 ATOM 208 N ARG D 23 201.060 17.046 230.472 1.00 65.58 ATOM 209 CA ARG D 23 199.792 16.938 231.169 1.00 65.79 ATOM 210 C ARG D 23 199.168 18.294 231.557 1.00 66.04 ATOM 211 O ARG D 23 197.987 18.395 231.869 1.00 66.25 ATOM 212 CB ARG D 23 200.067 16.159 232.433 1.00 65.66 ATOM 213 CG ARG D 23 199.162 15.078 232.660 1.00 65.70 ATOM 214 CD ARG D 23 199.853 13.765 232.588 1.00 65.44 ATOM 215 NE ARG D 23 199.970 13.199 233.926 1.00 65.36 ATOM 216 CZ ARG D 23 198.945 12.881 234.737 1.00 65.50 ATOM 217 NH1 ARG D 23 197.658 13.096 234.326 1.00 65.75 ATOM 218 NH2 ARG D 23 199.222 12.357 235.971 1.00 65.40 ATOM 219 N SER D 24 199.972 19.344 231.543 1.00 68.95 ATOM 220 CA SER D 24 199.563 20.633 232.029 1.00 69.15 ATOM 221 C SER D 24 199.676 21.563 230.845 1.00 69.23 ATOM 222 O SER D 24 199.352 22.756 230.954 1.00 69.42 ATOM 223 CB SER D 24 200.520 21.054 233.136 1.00 69.03 ATOM 224 OG SER D 24 201.344 19.942 233.512 1.00 68.77 ATOM 225 N LYS D 25 200.106 20.986 229.711 1.00 99.11 ATOM 226 CA LYS D 25 200.461 21.681 228.448 1.00 99.12 ATOM 227 C LYS D 25 201.797 22.437 228.553 1.00 98.97 ATOM 228 O LYS D 25 202.518 22.354 229.567 1.00 98.84 ATOM 229 CB LYS D 25 199.332 22.595 227.908 1.00 99.42 ATOM 230 CG LYS D 25 197.889 22.062 228.081 1.00 99.61 ATOM 231 CD LYS D 25 197.471 20.995 227.049 1.00 99.57 ATOM 232 CE LYS D 25 195.970 20.640 227.200 1.00 99.79 ATOM 233 NZ LYS D 25 195.283 20.219 225.925 1.00 99.86 TER