HEADER RIBOSOME 04-APR-13 4V9I TITLE Crystal structure of thermus thermophilus 70S in complex with tRNAs TITLE 2 and mRNA containing a pseudouridine in a stop codon COMPND MOL_ID: 53; COMPND 2 MOLECULE: 50S ribosomal protein L31; COMPND 3 CHAIN: B4, D4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 4V9I B 36 65 UNP Q5SJE1 RL31_THET8 10 39 SEQRES 1 B4 30 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 B4 30 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 B4 30 CYS SER LYS CYS ATOM 1 N VAL B 36 -178.877 -6.573 48.477 1.00 76.61 ATOM 2 CA VAL B 36 -180.139 -6.033 49.115 1.00 79.74 ATOM 3 C VAL B 36 -181.157 -5.494 48.067 1.00 80.43 ATOM 4 O VAL B 36 -180.777 -5.250 46.925 1.00 76.83 ATOM 5 CB VAL B 36 -179.817 -4.965 50.202 1.00 79.50 ATOM 6 CG1 VAL B 36 -178.707 -5.459 51.132 1.00 77.32 ATOM 7 CG2 VAL B 36 -179.465 -3.620 49.577 1.00 80.69 ATOM 8 N PRO B 37 -182.455 -5.326 48.446 1.00 85.55 ATOM 9 CA PRO B 37 -183.438 -4.908 47.437 1.00 88.47 ATOM 10 C PRO B 37 -183.203 -3.500 46.936 1.00 93.94 ATOM 11 O PRO B 37 -182.854 -2.621 47.728 1.00 95.87 ATOM 12 CB PRO B 37 -184.784 -4.997 48.176 1.00 86.30 ATOM 13 CG PRO B 37 -184.439 -4.870 49.610 1.00 86.55 ATOM 14 CD PRO B 37 -183.102 -5.544 49.756 1.00 88.17 ATOM 15 N ALA B 38 -183.412 -3.298 45.633 1.00 99.78 ATOM 16 CA ALA B 38 -183.027 -2.061 44.962 1.00106.27 ATOM 17 C ALA B 38 -184.165 -1.463 44.167 1.00117.13 ATOM 18 O ALA B 38 -185.161 -2.133 43.861 1.00112.45 ATOM 19 CB ALA B 38 -181.838 -2.301 44.048 1.00104.08 ATOM 20 N ARG B 39 -183.985 -0.185 43.837 1.00131.82 ATOM 21 CA ARG B 39 -184.978 0.601 43.111 1.00139.78 ATOM 22 C ARG B 39 -184.275 1.405 42.023 1.00128.51 ATOM 23 O ARG B 39 -183.550 2.355 42.306 1.00121.21 ATOM 24 CB ARG B 39 -185.721 1.535 44.072 1.00149.79 ATOM 25 CG ARG B 39 -185.907 0.954 45.471 1.00160.19 ATOM 26 CD ARG B 39 -186.875 1.762 46.321 1.00166.80 ATOM 27 NE ARG B 39 -188.108 2.089 45.606 1.00170.82 ATOM 28 CZ ARG B 39 -189.081 1.226 45.315 1.00173.82 ATOM 29 NH1 ARG B 39 -188.997 -0.054 45.668 1.00172.32 ATOM 30 NH2 ARG B 39 -190.154 1.650 44.658 1.00180.41 ATOM 31 N ILE B 40 -184.473 0.999 40.778 1.00124.12 ATOM 32 CA ILE B 40 -183.841 1.662 39.652 1.00129.32 ATOM 33 C ILE B 40 -184.781 2.771 39.193 1.00131.57 ATOM 34 O ILE B 40 -185.994 2.588 39.201 1.00137.57 ATOM 35 CB ILE B 40 -183.538 0.662 38.507 1.00136.19 ATOM 36 CG1 ILE B 40 -182.443 -0.340 38.923 1.00132.27 ATOM 37 CG2 ILE B 40 -183.110 1.397 37.244 1.00138.35 ATOM 38 CD1 ILE B 40 -182.946 -1.547 39.686 1.00131.80 ATOM 39 N ILE B 41 -184.219 3.919 38.814 1.00133.39 ATOM 40 CA ILE B 41 -185.009 5.066 38.351 1.00138.61 ATOM 41 C ILE B 41 -184.560 5.489 36.962 1.00136.41 ATOM 42 O ILE B 41 -183.416 5.902 36.784 1.00150.90 ATOM 43 CB ILE B 41 -184.852 6.290 39.282 1.00141.76 ATOM 44 CG1 ILE B 41 -185.227 5.938 40.733 1.00143.06 ATOM 45 CG2 ILE B 41 -185.674 7.466 38.758 1.00141.15 ATOM 46 CD1 ILE B 41 -186.655 5.462 40.942 1.00142.12 ATOM 47 N CYS B 42 -185.454 5.407 35.983 1.00129.74 ATOM 48 CA CYS B 42 -185.104 5.822 34.634 1.00126.44 ATOM 49 C CYS B 42 -185.340 7.290 34.435 1.00120.60 ATOM 50 O CYS B 42 -186.062 7.932 35.206 1.00101.99 ATOM 51 CB CYS B 42 -185.917 5.083 33.592 1.00124.62 ATOM 52 SG CYS B 42 -185.721 3.310 33.670 1.00148.31 ATOM 53 N GLY B 43 -184.695 7.801 33.388 1.00126.02 ATOM 54 CA GLY B 43 -185.056 9.067 32.769 1.00126.35 ATOM 55 C GLY B 43 -186.268 8.862 31.873 1.00128.27 ATOM 56 O GLY B 43 -186.907 9.829 31.455 1.00120.26 ATOM 57 N CYS B 44 -186.569 7.596 31.565 1.00126.44 ATOM 58 CA CYS B 44 -187.828 7.209 30.927 1.00114.89 ATOM 59 C CYS B 44 -188.918 6.848 31.958 1.00117.78 ATOM 60 O CYS B 44 -189.658 5.882 31.762 1.00118.03 ATOM 61 CB CYS B 44 -187.582 6.051 29.942 1.00102.72 ATOM 62 SG CYS B 44 -186.445 4.778 30.540 1.00 83.74 ATOM 63 N GLY B 45 -189.009 7.627 33.045 1.00115.92 ATOM 64 CA GLY B 45 -190.101 7.533 34.032 1.00117.48 ATOM 65 C GLY B 45 -190.157 6.248 34.843 1.00124.69 ATOM 66 O GLY B 45 -190.137 6.277 36.073 1.00125.79 ATOM 67 N ASN B 46 -190.309 5.139 34.120 1.00135.62 ATOM 68 CA ASN B 46 -190.193 3.747 34.606 1.00135.31 ATOM 69 C ASN B 46 -189.315 3.484 35.839 1.00126.02 ATOM 70 O ASN B 46 -188.161 3.918 35.890 1.00119.64 ATOM 71 CB ASN B 46 -189.662 2.891 33.436 1.00141.29 ATOM 72 CG ASN B 46 -189.897 1.387 33.607 1.00141.96 ATOM 73 OD1 ASN B 46 -189.494 0.607 32.742 1.00144.55 ATOM 74 ND2 ASN B 46 -190.549 0.973 34.693 1.00140.56 ATOM 75 N VAL B 47 -189.875 2.750 36.806 1.00121.40 ATOM 76 CA VAL B 47 -189.134 2.246 37.967 1.00118.56 ATOM 77 C VAL B 47 -189.181 0.715 37.990 1.00113.65 ATOM 78 O VAL B 47 -190.267 0.126 37.987 1.00107.36 ATOM 79 CB VAL B 47 -189.717 2.784 39.292 1.00121.31 ATOM 80 CG1 VAL B 47 -188.934 2.259 40.493 1.00122.60 ATOM 81 CG2 VAL B 47 -189.718 4.305 39.295 1.00122.63 ATOM 82 N ILE B 48 -188.003 0.087 38.019 1.00111.44 ATOM 83 CA ILE B 48 -187.882 -1.375 38.046 1.00112.44 ATOM 84 C ILE B 48 -187.459 -1.848 39.439 1.00112.00 ATOM 85 O ILE B 48 -186.720 -1.149 40.139 1.00113.43 ATOM 86 CB ILE B 48 -186.864 -1.893 37.001 1.00114.98 ATOM 87 CG1 ILE B 48 -187.118 -1.267 35.619 1.00115.55 ATOM 88 CG2 ILE B 48 -186.927 -3.414 36.895 1.00119.23 ATOM 89 CD1 ILE B 48 -186.130 -0.189 35.232 1.00114.25 ATOM 90 N GLU B 49 -187.926 -3.039 39.824 1.00109.20 ATOM 91 CA GLU B 49 -187.678 -3.597 41.157 1.00105.60 ATOM 92 C GLU B 49 -186.817 -4.875 41.087 1.00105.13 ATOM 93 O GLU B 49 -187.336 -5.993 41.019 1.00 99.47 ATOM 94 CB GLU B 49 -189.023 -3.866 41.844 1.00105.19 ATOM 95 CG GLU B 49 -189.157 -3.268 43.235 1.00106.40 ATOM 96 CD GLU B 49 -190.462 -2.510 43.406 1.00108.71 ATOM 97 OE1 GLU B 49 -190.703 -1.555 42.639 1.00105.43 ATOM 98 OE2 GLU B 49 -191.249 -2.862 44.307 1.00115.18 ATOM 99 N THR B 50 -185.496 -4.687 41.060 1.00107.31 ATOM 100 CA THR B 50 -184.533 -5.785 41.199 1.00100.87 ATOM 101 C THR B 50 -183.930 -5.642 42.583 1.00102.42 ATOM 102 O THR B 50 -184.449 -4.900 43.427 1.00 96.84 ATOM 103 CB THR B 50 -183.390 -5.782 40.128 1.00 95.47 ATOM 104 OG1 THR B 50 -182.322 -4.911 40.521 1.00 91.94 ATOM 105 CG2 THR B 50 -183.892 -5.365 38.764 1.00 95.29 ATOM 106 N TYR B 51 -182.832 -6.360 42.800 1.00108.45 ATOM 107 CA TYR B 51 -182.113 -6.358 44.067 1.00110.55 ATOM 108 C TYR B 51 -180.625 -6.271 43.723 1.00103.25 ATOM 109 O TYR B 51 -180.157 -6.928 42.786 1.00102.29 ATOM 110 CB TYR B 51 -182.473 -7.626 44.859 1.00114.63 ATOM 111 CG TYR B 51 -183.900 -8.062 44.587 1.00124.36 ATOM 112 CD1 TYR B 51 -184.177 -9.044 43.647 1.00128.41 ATOM 113 CD2 TYR B 51 -184.977 -7.434 45.211 1.00139.08 ATOM 114 CE1 TYR B 51 -185.479 -9.421 43.367 1.00138.95 ATOM 115 CE2 TYR B 51 -186.284 -7.803 44.937 1.00148.78 ATOM 116 CZ TYR B 51 -186.530 -8.801 44.016 1.00150.65 ATOM 117 OH TYR B 51 -187.826 -9.179 43.737 1.00167.98 ATOM 118 N SER B 52 -179.898 -5.417 44.438 1.00 93.58 ATOM 119 CA SER B 52 -178.484 -5.223 44.166 1.00 89.42 ATOM 120 C SER B 52 -177.770 -4.671 45.391 1.00 93.50 ATOM 121 O SER B 52 -178.296 -4.690 46.502 1.00 91.51 ATOM 122 CB SER B 52 -178.290 -4.286 42.961 1.00 87.85 ATOM 123 OG SER B 52 -178.310 -2.916 43.337 1.00 86.85 ATOM 124 N THR B 53 -176.543 -4.217 45.169 1.00100.68 ATOM 125 CA THR B 53 -175.793 -3.455 46.148 1.00 98.05 ATOM 126 C THR B 53 -176.205 -1.985 45.964 1.00112.14 ATOM 127 O THR B 53 -176.234 -1.496 44.831 1.00125.84 ATOM 128 CB THR B 53 -174.278 -3.679 45.940 1.00 87.30 ATOM 129 OG1 THR B 53 -173.915 -3.433 44.574 1.00 79.27 ATOM 130 CG2 THR B 53 -173.929 -5.109 46.256 1.00 85.67 ATOM 131 N LYS B 54 -176.558 -1.309 47.062 1.00114.60 ATOM 132 CA LYS B 54 -177.066 0.082 47.039 1.00119.72 ATOM 133 C LYS B 54 -178.332 0.278 46.167 1.00117.10 ATOM 134 O LYS B 54 -178.275 0.140 44.945 1.00110.72 ATOM 135 CB LYS B 54 -175.951 1.106 46.686 1.00124.73 ATOM 136 CG LYS B 54 -175.452 1.176 45.238 1.00123.99 ATOM 137 CD LYS B 54 -174.219 2.065 45.106 1.00123.00 ATOM 138 CE LYS B 54 -173.448 1.792 43.817 1.00117.93 ATOM 139 NZ LYS B 54 -172.155 2.533 43.750 1.00111.85 ATOM 140 N PRO B 55 -179.485 0.587 46.803 1.00123.17 ATOM 141 CA PRO B 55 -180.750 0.865 46.072 1.00133.70 ATOM 142 C PRO B 55 -180.808 2.196 45.299 1.00143.50 ATOM 143 O PRO B 55 -181.690 2.366 44.448 1.00139.03 ATOM 144 CB PRO B 55 -181.822 0.875 47.179 1.00126.14 ATOM 145 CG PRO B 55 -181.184 0.234 48.360 1.00127.90 ATOM 146 CD PRO B 55 -179.707 0.482 48.255 1.00121.90 ATOM 147 N GLU B 56 -179.899 3.126 45.607 1.00148.31 ATOM 148 CA GLU B 56 -179.859 4.444 44.953 1.00144.69 ATOM 149 C GLU B 56 -179.376 4.304 43.525 1.00133.53 ATOM 150 O GLU B 56 -178.190 4.052 43.315 1.00131.27 ATOM 151 CB GLU B 56 -178.921 5.406 45.706 1.00154.16 ATOM 152 CG GLU B 56 -179.632 6.454 46.557 1.00163.04 ATOM 153 CD GLU B 56 -180.048 7.689 45.765 1.00163.67 ATOM 154 OE1 GLU B 56 -179.297 8.110 44.848 1.00150.23 ATOM 155 OE2 GLU B 56 -181.128 8.247 46.071 1.00170.18 ATOM 156 N ILE B 57 -180.285 4.470 42.556 1.00129.16 ATOM 157 CA ILE B 57 -179.964 4.254 41.130 1.00129.04 ATOM 158 C ILE B 57 -180.505 5.330 40.150 1.00122.45 ATOM 159 O ILE B 57 -181.713 5.450 39.939 1.00122.65 ATOM 160 CB ILE B 57 -180.440 2.858 40.675 1.00130.12 ATOM 161 CG1 ILE B 57 -179.686 1.740 41.423 1.00137.91 ATOM 162 CG2 ILE B 57 -180.278 2.692 39.173 1.00129.38 ATOM 163 CD1 ILE B 57 -178.187 1.666 41.169 1.00135.72 ATOM 164 N TYR B 58 -179.577 6.080 39.548 1.00119.77 ATOM 165 CA TYR B 58 -179.858 7.079 38.509 1.00118.29 ATOM 166 C TYR B 58 -179.628 6.403 37.146 1.00115.68 ATOM 167 O TYR B 58 -178.476 6.168 36.782 1.00122.70 ATOM 168 CB TYR B 58 -178.861 8.277 38.556 1.00118.09 ATOM 169 CG TYR B 58 -178.602 9.047 39.861 1.00113.56 ATOM 170 CD1 TYR B 58 -178.764 10.439 39.902 1.00105.18 ATOM 171 CD2 TYR B 58 -178.109 8.411 41.018 1.00107.32 ATOM 172 CE1 TYR B 58 -178.500 11.157 41.056 1.00101.89 ATOM 173 CE2 TYR B 58 -177.852 9.127 42.178 1.00 99.69 ATOM 174 CZ TYR B 58 -178.047 10.496 42.186 1.00 99.86 ATOM 175 OH TYR B 58 -177.795 11.211 43.324 1.00 98.91 ATOM 176 N VAL B 59 -180.667 6.099 36.373 1.00110.39 ATOM 177 CA VAL B 59 -180.435 5.551 35.022 1.00104.45 ATOM 178 C VAL B 59 -180.714 6.588 33.943 1.00105.72 ATOM 179 O VAL B 59 -181.702 7.319 33.996 1.00 94.41 ATOM 180 CB VAL B 59 -181.243 4.260 34.740 1.00103.12 ATOM 181 CG1 VAL B 59 -181.111 3.814 33.288 1.00 97.72 ATOM 182 CG2 VAL B 59 -180.753 3.148 35.639 1.00108.93 ATOM 183 N GLU B 60 -179.814 6.631 32.966 1.00115.14 ATOM 184 CA GLU B 60 -180.025 7.377 31.736 1.00120.78 ATOM 185 C GLU B 60 -180.743 6.435 30.759 1.00126.73 ATOM 186 O GLU B 60 -180.124 5.906 29.830 1.00125.50 ATOM 187 CB GLU B 60 -178.693 7.865 31.126 1.00125.83 ATOM 188 CG GLU B 60 -177.554 8.160 32.107 1.00138.03 ATOM 189 CD GLU B 60 -176.435 7.112 32.095 1.00145.51 ATOM 190 OE1 GLU B 60 -176.096 6.595 30.995 1.00143.38 ATOM 191 OE2 GLU B 60 -175.866 6.823 33.183 1.00149.62 ATOM 192 N VAL B 61 -182.036 6.201 30.996 1.00127.96 ATOM 193 CA VAL B 61 -182.888 5.405 30.094 1.00121.23 ATOM 194 C VAL B 61 -182.576 3.890 30.071 1.00112.89 ATOM 195 O VAL B 61 -181.456 3.458 29.796 1.00 91.55 ATOM 196 CB VAL B 61 -182.888 6.006 28.660 1.00121.95 ATOM 197 CG1 VAL B 61 -183.098 4.940 27.597 1.00121.82 ATOM 198 CG2 VAL B 61 -183.939 7.110 28.543 1.00117.29 ATOM 199 N CYS B 62 -183.612 3.104 30.345 1.00116.80 ATOM 200 CA CYS B 62 -183.551 1.645 30.328 1.00118.86 ATOM 201 C CYS B 62 -183.862 1.117 28.924 1.00116.11 ATOM 202 O CYS B 62 -183.865 1.885 27.957 1.00116.48 ATOM 203 CB CYS B 62 -184.614 1.116 31.280 1.00122.71 ATOM 204 SG CYS B 62 -186.277 1.488 30.666 1.00132.80 ATOM 205 N SER B 63 -184.144 -0.188 28.816 1.00108.38 ATOM 206 CA SER B 63 -184.699 -0.770 27.586 1.00 96.74 ATOM 207 C SER B 63 -186.207 -0.526 27.546 1.00 91.75 ATOM 208 O SER B 63 -187.026 -1.433 27.680 1.00 81.86 ATOM 209 CB SER B 63 -184.345 -2.260 27.435 1.00 98.21 ATOM 210 OG SER B 63 -184.149 -2.886 28.691 1.00104.07 ATOM 211 N LYS B 64 -186.547 0.747 27.426 1.00 96.25 ATOM 212 CA LYS B 64 -187.851 1.183 26.971 1.00100.14 ATOM 213 C LYS B 64 -187.644 2.114 25.760 1.00 91.24 ATOM 214 O LYS B 64 -188.613 2.609 25.177 1.00 86.66 ATOM 215 CB LYS B 64 -188.565 1.913 28.108 1.00111.32 ATOM 216 CG LYS B 64 -190.023 2.256 27.832 1.00124.34 ATOM 217 CD LYS B 64 -190.500 3.418 28.693 1.00133.64 ATOM 218 CE LYS B 64 -191.761 4.058 28.128 1.00131.62 ATOM 219 NZ LYS B 64 -192.265 5.124 29.037 1.00132.95 ATOM 220 N CYS B 65 -186.377 2.293 25.358 1.00 81.98 ATOM 221 CA CYS B 65 -185.958 3.404 24.504 1.00 72.90 ATOM 222 C CYS B 65 -184.839 3.004 23.527 1.00 64.78 ATOM 223 O CYS B 65 -183.720 2.693 23.934 1.00 59.58 ATOM 224 CB CYS B 65 -185.493 4.560 25.400 1.00 73.26 ATOM 225 SG CYS B 65 -186.358 4.713 27.006 1.00 73.36 ATOM 226 OXT CYS B 65 -185.025 2.973 22.305 1.00 59.08 TER